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Zhang H, Jin G, Zhang J, Zhang Y, Gao B, Yan H. LW-1 induced resistance to TMV in tobacco was mediated by nitric oxide and salicylic acid pathway. PESTICIDE BIOCHEMISTRY AND PHYSIOLOGY 2024; 202:105896. [PMID: 38879345 DOI: 10.1016/j.pestbp.2024.105896] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/08/2024] [Revised: 03/30/2024] [Accepted: 04/03/2024] [Indexed: 06/29/2024]
Abstract
The objective of this study was to investigate the mechanism underlying LW-1-induced resistance to TMV in wild-type and salicylic acid (SA)-deficient NahG transgenic tobacco plants. Our findings revealed that LW-1 failed to induce antivirus infection activity and increase SA content in NahG tobacco, indicating the crucial role of SA in these processes. Meanwhile, LW-1 triggered defense-related early-signaling nitric oxide (NO) generation, as evidenced by the emergence of NO fluorescence in both types of tobacco upon treatment with LW-1, however, NO fluorescence was stronger in NahG compared to wild-type tobacco. Notably, both of them were eliminated by the NO scavenger cPTIO, which also reversed LW-1-induced antivirus activity and the increase of SA content, suggesting that NO participates in LW-1-induced resistance to TMV, and may act upstream of the SA pathway. Defense-related enzymes and genes were detected in tobacco with or without TMV inoculation, and the results showed that LW-1 regulated both enzyme activity (β-1,3-glucanase [GLU], catalase [CAT] and phenylalanine ammonia-lyase [PAL]) and gene expression (PR1, PAL, WYKY4) through NO signaling in both SA-dependent and SA-independent pathways.
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Affiliation(s)
- Hongyan Zhang
- College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Guojie Jin
- College of Enology, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Jing Zhang
- College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Yueyang Zhang
- College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100, China; Engineering and Technology Centers of Biopesticide in Shaanxi, Yangling, Shaanxi 712100, China
| | - Baowei Gao
- College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - He Yan
- College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100, China; Engineering and Technology Centers of Biopesticide in Shaanxi, Yangling, Shaanxi 712100, China.
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Moine A, Pugliese M, Monchiero M, Gribaudo I, Gullino ML, Pagliarani C, Gambino G. Effects of fungicide application on physiological and molecular responses of grapevine (Vitis vinifera L.): a comparison between copper and sulfur fungicides applied alone and in combination with novel fungicides. PEST MANAGEMENT SCIENCE 2023; 79:4569-4588. [PMID: 37434047 DOI: 10.1002/ps.7660] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/23/2022] [Revised: 05/12/2023] [Accepted: 07/12/2023] [Indexed: 07/13/2023]
Abstract
BACKGROUND Chemical products against fungi and oomycetes pose serious environmental issues. In the last decade, the use of less impacting active ingredients was encouraged to reduce chemical inputs in viticulture. In this study, the effect of different antifungal compounds on grapevine agronomic, physiological, and molecular responses in the vineyard was evaluated in addition to protection against powdery and downy mildews. RESULTS In 2 years and in two Vitis vinifera cultivars (Nebbiolo and Arneis), a conventional crop protection approach, based on traditional fungicides (sulfur and copper), was compared to combined strategies. A well-known resistance inducer (potassium phosphonate), Bacillus pumilus strain QST 2808 and calcium oxide, both active ingredients whose biological interaction with grapevine is poorly characterized, were applied in the combined strategies in association with chemical fungicides. Despite a genotype effect occurred, all treatments optimally controlled powdery and downy mildews, with minimal variations in physiological and molecular responses. Gas exchange, chlorophyll content and photosystem II efficiency increased in treated plants at the end of season, along with a slight improvement in the agronomic performances, and an activation of molecular defense processes linked to stilbene and jasmonate pathways. CONCLUSION The disease control strategies based on potassium phosphonate, Bacillus pumilus strain QST 2808 or calcium oxide combined with traditional chemical compounds did not cause severe limitations in plant ecophysiology, grape quality, and productive yields. The combination of potassium phosphonate and calcium oxide with traditional fungicides can represent a valuable strategy for reducing copper and sulfur inputs in the vineyards, including those organically managed. © 2023 The Authors. Pest Management Science published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry.
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Affiliation(s)
- Amedeo Moine
- Institute for Sustainable Plant Protection, National Research Council (IPSP-CNR), Torino, Italy
| | - Massimo Pugliese
- Centre of competence for the innovation in the agro-environmental sector (Agroinnova), Grugliasco, Italy
| | | | - Ivana Gribaudo
- Institute for Sustainable Plant Protection, National Research Council (IPSP-CNR), Torino, Italy
| | - Maria Lodovica Gullino
- Centre of competence for the innovation in the agro-environmental sector (Agroinnova), Grugliasco, Italy
| | - Chiara Pagliarani
- Institute for Sustainable Plant Protection, National Research Council (IPSP-CNR), Torino, Italy
| | - Giorgio Gambino
- Institute for Sustainable Plant Protection, National Research Council (IPSP-CNR), Torino, Italy
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Savoi S, Santiago A, Orduña L, Matus JT. Transcriptomic and metabolomic integration as a resource in grapevine to study fruit metabolite quality traits. FRONTIERS IN PLANT SCIENCE 2022; 13:937927. [PMID: 36340350 PMCID: PMC9630917 DOI: 10.3389/fpls.2022.937927] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/06/2022] [Accepted: 09/09/2022] [Indexed: 06/16/2023]
Abstract
Transcriptomics and metabolomics are methodologies being increasingly chosen to perform molecular studies in grapevine (Vitis vinifera L.), focusing either on plant and fruit development or on interaction with abiotic or biotic factors. Currently, the integration of these approaches has become of utmost relevance when studying key plant physiological and metabolic processes. The results from these analyses can undoubtedly be incorporated in breeding programs whereby genes associated with better fruit quality (e.g., those enhancing the accumulation of health-promoting compounds) or with stress resistance (e.g., those regulating beneficial responses to environmental transition) can be used as selection markers in crop improvement programs. Despite the vast amount of data being generated, integrative transcriptome/metabolome meta-analyses (i.e., the joint analysis of several studies) have not yet been fully accomplished in this species, mainly due to particular specificities of metabolomic studies, such as differences in data acquisition (i.e., different compounds being investigated), unappropriated and unstandardized metadata, or simply no deposition of data in public repositories. These meta-analyses require a high computational capacity for data mining a priori, but they also need appropriate tools to explore and visualize the integrated results. This perspective article explores the universe of omics studies conducted in V. vinifera, focusing on fruit-transcriptome and metabolome analyses as leading approaches to understand berry physiology, secondary metabolism, and quality. Moreover, we show how omics data can be integrated in a simple format and offered to the research community as a web resource, giving the chance to inspect potential gene-to-gene and gene-to-metabolite relationships that can later be tested in hypothesis-driven research. In the frame of the activities promoted by the COST Action CA17111 INTEGRAPE, we present the first grapevine transcriptomic and metabolomic integrated database (TransMetaDb) developed within the Vitis Visualization (VitViz) platform (https://tomsbiolab.com/vitviz). This tool also enables the user to conduct and explore meta-analyses utilizing different experiments, therefore hopefully motivating the community to generate Findable, Accessible, Interoperable and Reusable (F.A.I.R.) data to be included in the future.
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Affiliation(s)
- Stefania Savoi
- Department of Agricultural, Forest and Food Sciences, University of Turin, Grugliasco, Italy
| | - Antonio Santiago
- Institute for Integrative Systems Biology (I2SysBio), Universitat de València-CSIC, Paterna, Spain
| | - Luis Orduña
- Institute for Integrative Systems Biology (I2SysBio), Universitat de València-CSIC, Paterna, Spain
| | - José Tomás Matus
- Institute for Integrative Systems Biology (I2SysBio), Universitat de València-CSIC, Paterna, Spain
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Widely Targeted Metabolomics Profiling Reveals the Effect of Powdery Mildew on Wine Grape Varieties with Different Levels of Tolerance to the Disease. Foods 2022; 11:foods11162461. [PMID: 36010461 PMCID: PMC9407376 DOI: 10.3390/foods11162461] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2022] [Revised: 08/10/2022] [Accepted: 08/11/2022] [Indexed: 11/18/2022] Open
Abstract
Powdery mildew is an economic threat for viticulture because it not only affects grape yield, but also causes a series of impacts on the qualities of fruit and wine, especially the flavors and various metabolites. Different grape varieties may have different levels of powdery mildew resistance/tolerance and their components of their metabolome are also various. In this study, two wine grape varieties, Guipu No.6 (GP6) and Marselan (Mar) with different levels of powdery mildew tolerance, were used to compare the quality differences in metabolism level by using the widely targeted metabolomics method. The results show that GP6 has a better powdery mildew leaf tolerance than Mar. A total of 774 metabolites were detected by using a UPLC-QQQ-MS-based metabolomics approach, and 57 differential metabolites were identified as key metabolites that were accumulated after infection with powdery mildew in GP6 and Mar, including phenolic acids, flavonoids, terpenoids, stilbenes, lipids, nucleotides and derivatives, lignans and coumarins, and quinones. This finding indicates that the defense mechanisms of grape fruit are mainly associated with phenylpropane-flavonoid metabolism. Specifically, stilbenes had greater variations after powdery mildew infection in GP6; while in Mar, the variations of flavonoids, especially kaempferol-3-O-glucuronide and luteolin-7-O-glucuronide, were more remarkable. The above results demonstrate that stilbenes may play a more important role than flavonoids in resisting powdery mildew infection in GP6’s fruits, and the drastic variations of these phenolic compounds in different wine grapes after powdery mildew infection might also lead to quality difference in the flavors. This study can provide new insights into the understanding of the cause of powdery mildew tolerance in different grape varieties and the effects on the quality of wine grapes infected with the disease exerted by metabolism level.
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Giudice G, Moffa L, Niero M, Duso C, Sandrini M, Vazzoler LF, Luison M, Pasini E, Chitarra W, Nerva L. Novel sustainable strategies to control Plasmopara viticola in grapevine unveil new insights on priming responses and arthropods ecology. PEST MANAGEMENT SCIENCE 2022; 78:2342-2356. [PMID: 35246907 DOI: 10.1002/ps.6860] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/04/2021] [Revised: 01/26/2022] [Accepted: 03/04/2022] [Indexed: 06/14/2023]
Abstract
BACKGROUND Reduction of fungicide consumption in agriculture is globally recognized as a priority. Government authorities are fostering research to achieve a reduction of risks associated with conventional pesticides and promoting the development of sustainable alternatives. To address these issues, in the present study, alternative protocols for the control of downy mildew infection in grapevine were compared to the standard protocol. In the first protocol, only resistance inducers were used, comprising a single formulation with Acibenzolar S-methyl, laminarin and disodium-phosphonate. The second and third protocols followed the standard protocol but substituted phosphonates with phosphorus pentoxide and Ecklonia maxima extract. RESULTS The results showed that at veraison downy mildew incidence and severity in all tested protocols were significantly reduced compared to nontreated controls on both canopy and bunches. Expression analysis of key genes involved in plant stress response, indicated that the two protocols for phosphites substitution induced a remodulation of salicylic acid (SA) and jasmonic acid (JA), with positive impact on yields. Analysis of the first protocol revealed that the primed state induced a short delay in bunch ripening, with a shift of carbohydrate metabolism to boost the plant defences, involving an upregulation of defence related-gene, SAR response and a decreased ROS detoxification. Additionally, analysis on the arthropods populations, in parallel with the positive results achieved using alternatives to conventional fungicides, were enriched by those showing the potential of naturally occurring predators of spider mites. CONCLUSION This study provides practical solutions to reduce the environmental impact of treatments for the control downy mildew in viticulture. © 2022 Society of Chemical Industry.
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Affiliation(s)
- Gaetano Giudice
- Council for Agricultural Research and Economics, Research Centre for Viticulture and Enology CREA-VE, Conegliano, Italy
- Department of Agricultural and Environmental Sciences-Production, Landscape, Agroenergy (DiSAA), University of Milano, Milan, Italy
| | - Loredana Moffa
- Council for Agricultural Research and Economics, Research Centre for Viticulture and Enology CREA-VE, Conegliano, Italy
- Department of Agricultural, Food, Environmental and Animal Sciences, University of Udine, Udine, Italy
| | - Marina Niero
- Council for Agricultural Research and Economics, Research Centre for Viticulture and Enology CREA-VE, Conegliano, Italy
| | - Carlo Duso
- Department of Agronomy, Food, Natural Resources, Animals and Environment, University of Padova, Padova, Italy
| | - Marco Sandrini
- Council for Agricultural Research and Economics, Research Centre for Viticulture and Enology CREA-VE, Conegliano, Italy
- Department of Agricultural, Food, Environmental and Animal Sciences, University of Udine, Udine, Italy
| | | | | | | | - Walter Chitarra
- Council for Agricultural Research and Economics, Research Centre for Viticulture and Enology CREA-VE, Conegliano, Italy
- Institute for Sustainable Plant Protection, CNR, Torino, Italy
| | - Luca Nerva
- Council for Agricultural Research and Economics, Research Centre for Viticulture and Enology CREA-VE, Conegliano, Italy
- Institute for Sustainable Plant Protection, CNR, Torino, Italy
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Hot Water Treatment Causes Lasting Alteration to the Grapevine (Vitis vinifera L.) Mycobiome and Reduces Pathogenic Species Causing Grapevine Trunk Diseases. J Fungi (Basel) 2022; 8:jof8050485. [PMID: 35628741 PMCID: PMC9144887 DOI: 10.3390/jof8050485] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2022] [Revised: 04/30/2022] [Accepted: 05/03/2022] [Indexed: 11/23/2022] Open
Abstract
The effective management of grapevine trunk diseases (GTDs) is an ongoing challenge. Hot water treatment (HWT) is an environmentally friendly and economically viable option; however, the short-term effects of HWT on grapevine (Vitis vinifera L.) health and production are not fully understood. The aim of this study was to compare the effects of HWT on plant growth and fungal community structure in nursery stock until plants were completely established in the field. We assessed eleven graft and three rootstock varieties from four local nurseries in a region of Catalonia (NE Spain) where GTDs are a serious threat. After treatment, the plants were left to grow under field conditions for two growing seasons. Metabarcoding of the ITS region was used to study the mycobiomes of plant graft unions and root collars. We also assessed the influence of plant physiological indicators in community composition. Hot water treatment caused lasting changes in GTD communities in both the root collar and graft union that were not always characterized as a reduction of GTD-related fungi. However, HWT reduced the relative abundance of some serious GTD-associated pathogens such as Cadophora luteo-olivacea in graft tissues, and Phaeomoniella chlamydospora and Neofusicoccum parvum in the root collar. Treatment had the greatest influence on the total and GTD-related fungal communities of Chardonnay and Xarel·lo, respectively. Total community variation was driven by treatment and nursery in rootstocks, whereas HWT most significantly affected the GTD community composition in R-110 rootstock. In conclusion, changes in fungal abundance were species-specific and mostly dependent on the plant tissue type; however, HWT did reduce plant biomass accumulation in the short-term.
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7
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de Borba MC, Velho AC, de Freitas MB, Holvoet M, Maia-Grondard A, Baltenweck R, Magnin-Robert M, Randoux B, Hilbert JL, Reignault P, Hugueney P, Siah A, Stadnik MJ. A Laminarin-Based Formulation Protects Wheat Against Zymoseptoria tritici via Direct Antifungal Activity and Elicitation of Host Defense-Related Genes. PLANT DISEASE 2022; 106:1408-1418. [PMID: 34978870 DOI: 10.1094/pdis-08-21-1675-re] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
The present study aimed to evaluate the potential of the laminarin-based formulation Vacciplant to protect and induce resistance in wheat against Zymoseptoria tritici, a major pathogen on this crop. Under greenhouse conditions, a single foliar spraying of the product 2 days before inoculation with Z. tritici reduced disease severity and pycnidium density by 42 and 45%, respectively. Vacciplant exhibited a direct antifungal activity on Z. tritici conidial germination both in vitro and in planta. Moreover, it reduced in planta substomatal colonization as well as pycnidium formation on treated leaves. Molecular investigations revealed that Vacciplant elicits but did not prime the expression of several wheat genes related to defense pathways, including phenylpropanoids (phenylalanine ammonia-lyase and chalcone synthase), octadecanoids (lipoxygenase and allene oxide synthase), and pathogenesis-related proteins (β-1,3-endoglucanase and chitinase). By contrast, it did not modulate the expression of oxalate oxidase gene involved in the reactive oxygen species metabolism. Ultrahigh-performance liquid chromatography-mass spectrometry analysis indicated limited changes in leaf metabolome after product application in both noninoculated and inoculated conditions, suggesting a low metabolic cost associated with induction of plant resistance. This study provides evidence that the laminarin-based formulation confers protection to wheat against Z. tritici through direct antifungal activity and elicitation of plant defense-associated genes.
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Affiliation(s)
- Marlon C de Borba
- Federal University of Santa Catarina, Agricultural Science Center (UFSC-CCA), Laboratory of Plant Pathology, Rod. Admar Gonzaga 1346, 88034-001 Florianópolis-SC, Brazil
- Joint Research Unit Number 1158 BioEcoAgro, Junia, Université de Lille, Université Liège, UPJV, Université d'Artois, ULCO, INRAE, 2 Rue Norbert Ségard, BP 41290, F-59014 Lille Cedex, France
| | - Aline C Velho
- Federal University of Santa Catarina, Agricultural Science Center (UFSC-CCA), Laboratory of Plant Pathology, Rod. Admar Gonzaga 1346, 88034-001 Florianópolis-SC, Brazil
- Université du Littoral Côte d'Opale, Unité de Chimie Environnementale et Interactions sur le Vivant (EA 4492), CS 80699, F-62228 Calais Cedex, France
| | - Mateus B de Freitas
- Federal University of Santa Catarina, Agricultural Science Center (UFSC-CCA), Laboratory of Plant Pathology, Rod. Admar Gonzaga 1346, 88034-001 Florianópolis-SC, Brazil
- Joint Research Unit Number 1158 BioEcoAgro, Junia, Université de Lille, Université Liège, UPJV, Université d'Artois, ULCO, INRAE, 2 Rue Norbert Ségard, BP 41290, F-59014 Lille Cedex, France
| | - Maxime Holvoet
- Joint Research Unit Number 1158 BioEcoAgro, Junia, Université de Lille, Université Liège, UPJV, Université d'Artois, ULCO, INRAE, 2 Rue Norbert Ségard, BP 41290, F-59014 Lille Cedex, France
| | | | | | - Maryline Magnin-Robert
- Université du Littoral Côte d'Opale, Unité de Chimie Environnementale et Interactions sur le Vivant (EA 4492), CS 80699, F-62228 Calais Cedex, France
| | - Béatrice Randoux
- Université du Littoral Côte d'Opale, Unité de Chimie Environnementale et Interactions sur le Vivant (EA 4492), CS 80699, F-62228 Calais Cedex, France
| | - Jean-Louis Hilbert
- Joint Research Unit Number 1158 BioEcoAgro, Junia, Université de Lille, Université Liège, UPJV, Université d'Artois, ULCO, INRAE, 2 Rue Norbert Ségard, BP 41290, F-59014 Lille Cedex, France
| | - Philippe Reignault
- Université du Littoral Côte d'Opale, Unité de Chimie Environnementale et Interactions sur le Vivant (EA 4492), CS 80699, F-62228 Calais Cedex, France
| | - Philippe Hugueney
- Université de Strasbourg, INRAE, SVQV UMR-A1131, 68000 Colmar, France
| | - Ali Siah
- Joint Research Unit Number 1158 BioEcoAgro, Junia, Université de Lille, Université Liège, UPJV, Université d'Artois, ULCO, INRAE, 2 Rue Norbert Ségard, BP 41290, F-59014 Lille Cedex, France
| | - Marciel J Stadnik
- Federal University of Santa Catarina, Agricultural Science Center (UFSC-CCA), Laboratory of Plant Pathology, Rod. Admar Gonzaga 1346, 88034-001 Florianópolis-SC, Brazil
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Nerva L, Guaschino M, Pagliarani C, De Rosso M, Lovisolo C, Chitarra W. Spray-induced gene silencing targeting a glutathione S-transferase gene improves resilience to drought in grapevine. PLANT, CELL & ENVIRONMENT 2022; 45:347-361. [PMID: 34799858 DOI: 10.1111/pce.14228] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/15/2021] [Revised: 11/10/2021] [Accepted: 11/12/2021] [Indexed: 06/13/2023]
Abstract
Along with the ongoing climate change, drought events are predicted to become more severe. In this context, the spray-induced gene silencing (SIGS) technique could represent a useful strategy to improve crop stress resilience. A previous study demonstrated that the Arabidopsis mutants for a glutathione S-transferase (GST) gene had increased abscisic acid (ABA) levels and a more activated antioxidant system, both features that improved drought resilience. Here, we used SIGS to target a putative grape GST gene (VvGST40). Then, ecophysiological, biochemical and molecular responses of 'Chardonnay' cuttings were analysed during a drought and recovery time-course. Gas exchange, ABA and t-resveratrol concentration as well as expression of stress-related genes were monitored in not treated controls, dsRNA-VvGST40- and dsRNA-GFP- (negative control of the technique) treated plants, either submitted or not to drought. VvGST40-treated plants revealed increased resilience to severe drought as attested by the ecophysiological data. Analysis of target metabolites and antioxidant- and ABA-related transcripts confirmed that VvGST40-treated plants were in a priming status compared with controls. SIGS targeting an endogenous gene was successfully applied in grapevine, confirming the ability of this technique to be exploited not only for plant protection issues but also for functional genomic studies.
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Affiliation(s)
- Luca Nerva
- Council for Agricultural Research and Economics-Research Centre for Viticulture and Enology (CREA-VE), Conegliano, TV, Italy
- National Research Council of Italy-Institute for Sustainable Plant Protection (IPSP-CNR), Torino, TO, Italy
| | - Micol Guaschino
- Council for Agricultural Research and Economics-Research Centre for Viticulture and Enology (CREA-VE), Conegliano, TV, Italy
- Department of Agricultural, Forest and Food Sciences (DISAFA), University of Torino, Grugliasco, TO, Italy
| | - Chiara Pagliarani
- National Research Council of Italy-Institute for Sustainable Plant Protection (IPSP-CNR), Torino, TO, Italy
| | - Mirko De Rosso
- Council for Agricultural Research and Economics-Research Centre for Viticulture and Enology (CREA-VE), Conegliano, TV, Italy
| | - Claudio Lovisolo
- Department of Agricultural, Forest and Food Sciences (DISAFA), University of Torino, Grugliasco, TO, Italy
| | - Walter Chitarra
- Council for Agricultural Research and Economics-Research Centre for Viticulture and Enology (CREA-VE), Conegliano, TV, Italy
- National Research Council of Italy-Institute for Sustainable Plant Protection (IPSP-CNR), Torino, TO, Italy
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9
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Calle García J, Guadagno A, Paytuvi-Gallart A, Saera-Vila A, Amoroso CG, D'Esposito D, Andolfo G, Aiese Cigliano R, Sanseverino W, Ercolano MR. PRGdb 4.0: an updated database dedicated to genes involved in plant disease resistance process. Nucleic Acids Res 2021; 50:D1483-D1490. [PMID: 34850118 PMCID: PMC8729912 DOI: 10.1093/nar/gkab1087] [Citation(s) in RCA: 25] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2021] [Revised: 10/11/2021] [Accepted: 11/19/2021] [Indexed: 12/03/2022] Open
Abstract
The Plant Resistance Genes database (PRGdb; http://prgdb.org/prgdb4/) has been greatly expanded, keeping pace with the increasing amount of available knowledge and data (sequenced proteomes, cloned genes, public analysis data, etc.). The easy-to-use style of the database website has been maintained, while an updated prediction tool, more data and a new section have been added. This new section will contain plant resistance transcriptomic experiments, providing additional easy-to-access experimental information. DRAGO3, the tool for automatic annotation and prediction of plant resistance genes behind PRGdb, has been improved in both accuracy and sensitivity, leading to more reliable predictions. PRGdb offers 199 reference resistance genes and 586.652 putative resistance genes from 182 sequenced proteomes. Compared to the previous release, PRGdb 4.0 has increased the number of reference resistance genes from 153 to 199, the number of putative resistance genes from 177K from 76 proteomes to 586K from 182 sequenced proteomes. A new section has been created that collects plant-pathogen transcriptomic data for five species of agricultural interest. Thereby, with these improvements and data expansions, PRGdb 4.0 aims to serve as a reference to the plant scientific community and breeders worldwide, helping to further study plant resistance mechanisms that contribute to fighting pathogens.
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Affiliation(s)
- Joan Calle García
- Sequentia Biotech SL, Calle Comte D'Urgell 240, 08036 Barcelona, Spain
| | - Anna Guadagno
- Dipartimento di Agraria, Università di Napoli 'Federico II', Via Università 100, 80055 Portici, Italy
| | | | | | - Ciro Gianmaria Amoroso
- Dipartimento di Agraria, Università di Napoli 'Federico II', Via Università 100, 80055 Portici, Italy
| | - Daniela D'Esposito
- Dipartimento di Agraria, Università di Napoli 'Federico II', Via Università 100, 80055 Portici, Italy
| | - Giuseppe Andolfo
- Dipartimento di Agraria, Università di Napoli 'Federico II', Via Università 100, 80055 Portici, Italy
| | | | | | - Maria Raffaella Ercolano
- Dipartimento di Agraria, Università di Napoli 'Federico II', Via Università 100, 80055 Portici, Italy
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10
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Bellini A, Pugliese M, Guarnaccia V, Meloni GR, Gullino LM. Calcium oxide, potassium phosphite and a Trichoderma enriched compost water suspension protect Capsicum annuum against Phytophthora capsici by priming the immune system. PEST MANAGEMENT SCIENCE 2021; 77:3484-3490. [PMID: 33829633 PMCID: PMC8251602 DOI: 10.1002/ps.6401] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/07/2021] [Revised: 03/14/2021] [Accepted: 04/08/2021] [Indexed: 05/05/2023]
Abstract
BACKGROUND Proper management of Phytophthora capsici in pepper cultivation is extremely important, since Phytophthora blight is the main disease of this crop worldwide. In the past, the main strategy adopted had been the use of fungicides, causing, in some cases, the development of P. capsici resistant strains. In this work three different treatments selected from previous studies (potassium phosphite, calcium oxide and a water suspension from Trichoderma sp. TW2 enriched compost) were tested to prove their ability to activate the systemic acquired resistance (SAR) in pepper against P. capsici; acibenzolar-s-methyl was used as positive control. Two independent growth chamber pot experiments were performed, spatially dividing the site of treatments application (as radical drench) and the site of inoculation (as agar plug on the third leaf). RESULTS Leaf lesions were measured, showing a significant reduction on all treated plants compared to the untreated control. To further confirm this hypothesis, the expression levels of three SAR key genes (CaPBR1, CaPO1 and CaDEF1) were evaluated though RT-Real Time PCR at the three end-point times: T0, T6 and T24. A significant increase of target genes expression at least in one end-point time in each treated plant was observed. Eventually, statistical overaccumulation of salicylic acid was observed in the upper leaves at the same end-point times, through HPLC-MS/MS analysis. CONCLUSION This work confirmed the hypothesis that the three treatments tested have the ability to prime the plant immune system, leading pepper to an alert status able to confer a better defence against P. capsici. © 2021 The Authors. Pest Management Science published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry.
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Affiliation(s)
- Alessio Bellini
- AGROINNOVA – Centre of Competence for the Innovation in the Agro‐Environmental SectorUniversity of TurinTurinItaly
- Agricultural, Forestry and Food Sciences Department (DISAFA)University of TurinTurinItaly
| | - Massimo Pugliese
- AGROINNOVA – Centre of Competence for the Innovation in the Agro‐Environmental SectorUniversity of TurinTurinItaly
- Agricultural, Forestry and Food Sciences Department (DISAFA)University of TurinTurinItaly
| | - Vladimiro Guarnaccia
- AGROINNOVA – Centre of Competence for the Innovation in the Agro‐Environmental SectorUniversity of TurinTurinItaly
- Agricultural, Forestry and Food Sciences Department (DISAFA)University of TurinTurinItaly
| | - Giovanna Roberta Meloni
- AGROINNOVA – Centre of Competence for the Innovation in the Agro‐Environmental SectorUniversity of TurinTurinItaly
- Agricultural, Forestry and Food Sciences Department (DISAFA)University of TurinTurinItaly
| | - Lodovica Maria Gullino
- AGROINNOVA – Centre of Competence for the Innovation in the Agro‐Environmental SectorUniversity of TurinTurinItaly
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Fu R, Cheng R, Wang S, Li J, Zhang J. Succinoglycan Riclin reshaped the soil microbiota by accumulating plant probiotic species to improve the soil suppressiveness on Fusarium wilt of cucumber seedlings. Int J Biol Macromol 2021; 182:1883-1892. [PMID: 34062161 DOI: 10.1016/j.ijbiomac.2021.05.180] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2021] [Revised: 05/14/2021] [Accepted: 05/26/2021] [Indexed: 11/26/2022]
Abstract
Biocontrol of soil-borne pathogens by recruiting soil microbiota brings forth benefits to soil quality and plant production while lowers environmental impact. Succinoglycan possesses various biological activities, but its role in soil amendment is still elusive. The succinoglycan Riclin was investigated in this study as a polysaccharide-type biocontrol agent for improving the soil suppressiveness on a typical fungal pathogen Fusarium oxysporum f. sp. cucumerinum (FOC). Results demonstrated that addition of Riclin increased the soil microbial carbon and lowered the species richness of soil fungal communities. After addition of 2.5 mg/g Riclin for 90 days, the relative abundance of Actinobacteria and Firmicutes were increased by 76.6% and 193.4%, compared with the control. Meanwhile, Proteobacteria and Ascomycota were decreased by 25.9% and 30.4%. The relative abundance of beneficial genera, namely Nocardioides, Kribbella, Streptomyces, Gaiella, Marmoricola, Bacillus, and Rhizobium, became 1.13, 5.17, 0.87, 0.45, 3.57, 4.53, and 6.30 folds higher than the control, respectively. Antagonism towards soil-borne pathogens was probably enhanced as both hydrolase activity and biosynthesis of bioactive secondary compounds were improved. Importantly, Riclin-treated soil significantly reduced the incidence of Fusarium wilt of cucumber seedlings by suppression of FOC. In conclusion, addition of Riclin was conducive to the improvement of soil suppressiveness.
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Affiliation(s)
- Renjie Fu
- Center for Molecular Metabolism, Nanjing University of Science and Technology, 200 Xiaolingwei Street, Nanjing 210094, China
| | - Rui Cheng
- Center for Molecular Metabolism, Nanjing University of Science and Technology, 200 Xiaolingwei Street, Nanjing 210094, China
| | - Shiming Wang
- Center for Molecular Metabolism, Nanjing University of Science and Technology, 200 Xiaolingwei Street, Nanjing 210094, China
| | - Jing Li
- Center for Molecular Metabolism, Nanjing University of Science and Technology, 200 Xiaolingwei Street, Nanjing 210094, China.
| | - Jianfa Zhang
- Center for Molecular Metabolism, Nanjing University of Science and Technology, 200 Xiaolingwei Street, Nanjing 210094, China
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Campayo A, Savoi S, Romieu C, López-Jiménez AJ, Serrano de la Hoz K, Salinas MR, Torregrosa L, Alonso GL. The application of ozonated water rearranges the Vitis vinifera L. leaf and berry transcriptomes eliciting defence and antioxidant responses. Sci Rep 2021; 11:8114. [PMID: 33854120 PMCID: PMC8046768 DOI: 10.1038/s41598-021-87542-y] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2021] [Accepted: 03/25/2021] [Indexed: 12/17/2022] Open
Abstract
Ozonated water has become an innovative, environmentally friendly tool for controlling the development of fungal diseases in the vineyard or during grape postharvest conservation. However, little information is currently available on the effects of ozonated water sprayings on the grapevine physiology and metabolism. Using the microvine model, we studied the transcriptomic response of leaf and fruit organs to this treatment. The response to ozone was observed to be organ and developmental stage-dependent, with a decrease of the number of DEGs (differentially expressed genes) in the fruit from the onset of ripening to later stages. The most highly up-regulated gene families were heat-shock proteins and chaperones. Other up-regulated genes were involved in oxidative stress homeostasis such as those of the ascorbate-glutathione cycle and glutathione S-transferases. In contrast, genes related to cell wall development and secondary metabolites (carotenoids, terpenoids, phenylpropanoids / flavonoids) were generally down-regulated after ozone treatment, mainly in the early stage of fruit ripening. This down-regulation may indicate a possible carbon competition favouring the re-establishment and maintenance of the redox homeostasis rather than the synthesis of secondary metabolites at the beginning of ripening, the most ozone responsive developmental stage.
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Affiliation(s)
- Ana Campayo
- Cátedra de Química Agrícola, E.T.S.I. Agrónomos y de Montes, Universidad de Castilla-La Mancha, Avda. de España s/n, 02071, Albacete, Spain
- BetterRID (Better Research, Innovation and Development, S.L.), Carretera de Las Peñas (CM-3203), Km 3.2, Campo de Prácticas-UCLM, 02071, Albacete, Spain
| | - Stefania Savoi
- AGAP, CIRAD, INRAe, Institut Agro-Montpellier SupAgro, Montpellier University, 34060, Montpellier, France
| | - Charles Romieu
- AGAP, CIRAD, INRAe, Institut Agro-Montpellier SupAgro, Montpellier University, 34060, Montpellier, France
| | - Alberto José López-Jiménez
- Departamento de Ciencia y Tecnología Agroforestal y Genética, Universidad de Castilla-La Mancha, Campus Universitario s/n, 02071, Albacete, Spain
| | - Kortes Serrano de la Hoz
- BetterRID (Better Research, Innovation and Development, S.L.), Carretera de Las Peñas (CM-3203), Km 3.2, Campo de Prácticas-UCLM, 02071, Albacete, Spain
| | - M Rosario Salinas
- Cátedra de Química Agrícola, E.T.S.I. Agrónomos y de Montes, Universidad de Castilla-La Mancha, Avda. de España s/n, 02071, Albacete, Spain
| | - Laurent Torregrosa
- AGAP, CIRAD, INRAe, Institut Agro-Montpellier SupAgro, Montpellier University, 34060, Montpellier, France.
| | - Gonzalo L Alonso
- Cátedra de Química Agrícola, E.T.S.I. Agrónomos y de Montes, Universidad de Castilla-La Mancha, Avda. de España s/n, 02071, Albacete, Spain
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Secondary Metabolism and Defense Responses Are Differently Regulated in Two Grapevine Cultivars during Ripening. Int J Mol Sci 2021; 22:ijms22063045. [PMID: 33802641 PMCID: PMC8002507 DOI: 10.3390/ijms22063045] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2021] [Revised: 03/12/2021] [Accepted: 03/14/2021] [Indexed: 12/31/2022] Open
Abstract
Vitis vinifera ‘Nebbiolo’ is one of the most important wine grape cultivars used to produce prestigious high-quality wines known throughout the world, such as Barolo and Barbaresco. ‘Nebbiolo’ is a distinctive genotype characterized by medium/high vigor, long vegetative and ripening cycles, and limited berry skin color rich in 3′-hydroxylated anthocyanins. To investigate the molecular basis of these characteristics, ‘Nebbiolo’ berries collected at three different stages of ripening (berry pea size, véraison, and harvest) were compared with V. vinifera ‘Barbera’ berries, which are rich in 3′,5′-hydroxylated anthocyanins, using transcriptomic and analytical approaches. In two consecutive seasons, the two genotypes confirmed their characteristic anthocyanin profiles associated with a different modulation of their transcriptomes during ripening. Secondary metabolism and response to stress were the functional categories that most differentially changed between ‘Nebbiolo’ and ‘Barbera’. The profile rich in 3′-hydroxylated anthocyanins of ‘Nebbiolo’ was likely linked to a transcriptional downregulation of key genes of anthocyanin biosynthesis. In addition, at berry pea size, the defense metabolism was more active in ‘Nebbiolo’ than ‘Barbera’ in absence of biotic attacks. Accordingly, several pathogenesis-related proteins, WRKY transcription factors, and stilbene synthase genes were overexpressed in ‘Nebbiolo’, suggesting an interesting specific regulation of defense pathways in this genotype that deserves to be further explored.
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