Marine Microphytobenthic Assemblage Shift along a Natural Shallow-Water CO2 Gradient Subjected to Multiple Environmental Stressors

Ocean acidification alters microeukaryotic and bacterial food web interactions in a eutrophic subtropical mesocosm

Ocean acidification (OA) is known to influence biological and ecological processes, mainly focusing on its impacts on single species, but little has been documented on how OA may alter plankton community interactions. Here, we conducted a mesocosm experiment with ambient (∼410 ppmv) and high (1000 ppmv) CO2 concentrations in a subtropical eutrophic region of the East China Sea and examined the community dynamics of microeukaryotes, bacterioplankton and microeukaryote-attached bacteria in the enclosed coastal seawater. The OA treatment with elevated CO2 affected taxa as the phytoplankton bloom stages progressed, with a 72.89% decrease in relative abundance of the protist Cercozoa on day 10 and a 322% increase in relative abundance of Stramenopile dominated by diatoms, accompanied by a 29.54% decrease in relative abundance of attached Alphaproteobacteria on day 28. Our study revealed that protozoans with different prey preferences had differing sensitivity to high CO2, and attached bacteria were more significantly affected by high CO2 compared to bacterioplankton. Our findings indicate that high CO2 changed the co-occurrence network complexity and stability of microeukaryotes more than those of bacteria. Furthermore, high CO2 was found to alter the proportions of potential interactions between phytoplankton and their predators, as well as microeukaryotes and their attached bacteria in the networks. The changes in the relative abundances and interactions of microeukaryotes between their predators in response to high CO2 revealed in our study suggest that high CO2 may have profound impacts on marine food webs.

Volcanic-associated ecosystems of the Mediterranean Sea: a systematic map and an interactive tool to support their conservation

Background

Hydrothermal vents, cold seeps, pockmarks and seamounts are widely distributed on the ocean floor. Over the last fifty years, the knowledge about these volcanic-associated marine ecosystems has notably increased, yet available information is still limited, scattered, and unsuitable to support decision-making processes for the conservation and management of the marine environment.

Methods

Here we searched the Scopus database and the platform Web of Science to collect the scientific information available for these ecosystems in the Mediterranean Sea. The collected literature and the bio-geographic and population variables extracted are provided into a systematic map as an online tool that includes an updated database searchable through a user-friendly R-shiny app.

Results

The 433 literature items with almost one thousand observations provided evidence of more than 100 different volcanic-associated marine ecosystem sites, mostly distributed in the shallow waters of the Mediterranean Sea. Less than 30% of these sites are currently included in protected or regulated areas. The updated database available in the R-shiny app is a tool that could guide the implementation of more effective protection measures for volcanic-associated marine ecosystems in the Mediterranean Sea within existing management instruments under the EU Habitats Directive. Moreover, the information provided in this study could aid policymakers in defining the priorities for the future protection measures needed to achieve the targets of the UN Agenda 2030.

Microbial Biofilms Along a Geochemical Gradient at the Shallow-Water Hydrothermal System of Vulcano Island, Mediterranean Sea

Shallow water hydrothermal vents represent highly dynamic environments where strong geochemical gradients can shape microbial communities. Recently, these systems are being widely used for investigating the effects of ocean acidification on biota as vent emissions can release high CO₂ concentrations causing local pH reduction. However, other gas species, as well as trace elements and metals, are often released in association with CO₂ and can potentially act as confounding factors. In this study, we evaluated the composition, diversity and inferred functional profiles of microbial biofilms in Levante Bay (Vulcano Island, Italy, Mediterranean Sea), a well-studied shallow-water hydrothermal vent system. We analyzed 16S rRNA transcripts from biofilms exposed to different intensity of hydrothermal activity, following a redox and pH gradient across the bay. We found that elevated CO₂ concentrations causing low pH can affect the response of bacterial groups and taxa by either increasing or decreasing their relative abundance. H₂S proved to be a highly selective factor shaping the composition and affecting the diversity of the community by selecting for sulfide-dependent, chemolithoautotrophic bacteria. The analysis of the 16S rRNA transcripts, along with the inferred functional profile of the communities, revealed a strong influence of H₂S in the southern portion of the study area, and temporal succession affected the inferred abundance of genes for key metabolic pathways. Our results revealed that the composition of the microbial assemblages vary at very small spatial scales, mirroring the highly variable geochemical signature of vent emissions and cautioning for the use of these environments as models to investigate the effects of ocean acidification on microbial diversity.

Reduced seawater pH alters marine biofilms with impacts for marine polychaete larval settlement

Ocean acidification (OA) can negatively affect early-life stages of marine organisms, with the key processes of larval settlement and metamorphosis potentially vulnerable to reduced seawater pH. Settlement success depends strongly on suitable substrates and environmental cues, with marine biofilms as key settlement inducers for a range of marine invertebrate larvae. This study experimentally investigated (1) how seawater pH determines growth and community composition of marine biofilms, and (2) whether marine biofilms developed under different pH conditions can alter settlement success in the New Zealand serpulid polychaete Galeolaria hystrix. Biofilms were developed under six pH_(T) treatments (spanning from 7.0 to 8.1 [ambient]) in a flow-through system for up to 14 months. Biofilms of different ages (7, 10 and 14 months) were used to assay successful settlement of competent G. hystrix larvae reared under ambient conditions. Biofilm microbiomes were characterized through amplicon sequencing of the small subunit ribosomal rRNA gene (16S and 18S). Biofilm community composition was stable over time within each pH treatment and biofilm age did not affect larval settlement selectivity. Seawater pH treatment strongly influenced biofilm community composition, as well as subsequent settlement success when biofilms were presented to competent Galeolaria larvae. Exposure to biofilms incubated under OA-treatments caused a decrease in larval settlement of up to 40% compared to the ambient treatments. We observed a decrease in settlement on biofilms relative to ambient pH for slides incubated at pH 7.9 and 7.7. This trend was reversed at pH 7.4, resulting in high settlement, comparable to ambient biofilms. Settlement decreased on biofilms from pH 7.2, and no settlement was observed on biofilms from pH 7.0. For the first time, we show that long-term incubation of marine biofilms under a wide range of reduced seawater pH treatments can alter marine biofilms in such a way that settlement success in marine invertebrates can be compromised.

Responses of Intertidal Bacterial Biofilm Communities to Increasing pCO2

The effects of ocean acidification on ecosystems remain poorly understood, because it is difficult to simulate the effects of elevated CO₂ on entire marine communities. Natural systems enriched in CO₂ are being used to help understand the long-term effects of ocean acidification in situ. Here, we compared biofilm bacterial communities on intertidal cobbles/boulders and bedrock along a seawater CO₂ gradient off Japan. Samples sequenced for 16S rRNA showed differences in bacterial communities with different pCO₂ and between habitat types. In both habitats, bacterial diversity increased in the acidified conditions. Differences in pCO₂ were associated with differences in the relative abundance of the dominant phyla. However, despite the differences in community composition, there was no indication that these changes would be significant for nutrient cycling and ecosystem function. As well as direct effects of seawater chemistry on the biofilm, increased microalgal growth and decreased grazing may contribute to the shift in bacterial composition at high CO₂, as documented by other studies. Thus, the effects of changes in bacterial community composition due to globally increasing pCO₂ levels require further investigation to assess the implications for marine ecosystem function. However, the apparent lack of functional shifts in biofilms along the pCO₂ gradient is a reassuring indicator of stability of their ecosystem functions in shallow ocean margins.

Shifts in Diatom Dominance Associated with Seasonal Changes in an Estuarine-Mangrove Phytoplankton Community

A study on seasonal phytoplankton abundance and composition in a mangrove estuary, Matang Mangrove Forest Reserve (MMFR), Malaysia, was carried out to determine the phytoplankton structure in this ecosystem, and to identify potential indicators of environmental changes. Phytoplankton samples were collected bimonthly from June 2010 to April 2011, to cover both dry (June to October) and wet (November to April) seasons, at four selected sampling sites along the river. Diatoms showed the highest number of species (50 species) from a total of 85 phytoplankton species from 76 genera. Diatoms contributed more than 90% of the total phytoplankton abundance during the dry season (southwest monsoon) and less than 70% during the wet season (northeast monsoon) as dinoflagellates became more abundant during the rainy season. Two diatoms were recorded as dominant species throughout the sampling period; Cyclotella sp. and Skeletonema costatum. Cyclotella sp. formed the most abundant species (62% of total phytoplankton) during the dry period characterized by low nutrients and relatively low turbidity. Skeletonema costatum contributed 93% of the total phytoplankton in October, which marked the end of the dry season and the beginning of the wet season, characterized by strong winds and high waves leading to the upwelling of the water column. Massive blooms of Skeletonema costatum occurred during the upwelling when total nitrogen (TN) and total phosphorus (TP) concentrations were highest (p < 0.05) throughout the year. The abundance of diatom species during the wet season was more evenly distributed, with most diatom species contributing less than 12% of the total phytoplankton. Autotrophic producers such as diatoms were limited by high turbidity during the northeast monsoon when the rainfall was high. During the wet season, Cyclotella and Skeletonema costatum only contributed 9% and 5% of the total phytoplankton, respectively, as dinoflagellates had more competitive advantage in turbid waters. This study illustrates that some diatom species such as Cyclotella sp. and Skeletonema costatum could be used as indicators of the environmental changes in marine waters.

Diatoms Dominate and Alter Marine Food-Webs When CO2 Rises

Diatoms are so important in ocean food-webs that any human induced changes in their abundance could have major effects on the ecology of our seas. The large chain-forming diatom Biddulphia biddulphiana greatly increases in abundance as pCO2 increases along natural seawater CO2 gradients in the north Pacific Ocean. In areas with reference levels of pCO2, it was hard to find, but as seawater carbon dioxide levels rose, it replaced seaweeds and became the main habitat-forming species on the seabed. This diatom algal turf supported a marine invertebrate community that was much less diverse and completely differed from the benthic communities found at present-day levels of pCO2. Seawater CO2 enrichment stimulated the growth and photosynthetic efficiency of benthic diatoms, but reduced the abundance of calcified grazers such as gastropods and sea urchins. These observations suggest that ocean acidification will shift photic zone community composition so that coastal food-web structure and ecosystem function are homogenised, simplified, and more strongly affected by seasonal algal blooms.

CO2 leakage can cause loss of benthic biodiversity in submarine sands

One of the options to mitigate atmospheric CO₂ increase is CO₂ Capture and Storage in sub-seabed geological formations. Since predicting long-term storage security is difficult, different CO₂ leakage scenarios and impacts on marine ecosystems require evaluation. Submarine CO₂ vents may serve as natural analogues and allow studying the effects of CO₂ leakage in a holistic approach. At the study site east of Basiluzzo Islet off Panarea Island (Italy), gas emissions (90-99% CO₂) occur at moderate flows (80-120 L m^-2 h^-1). We investigated the effects of acidified porewater conditions (pH_T range: 5.5-7.7) on the diversity of benthic bacteria and invertebrates by sampling natural sediments in three subsequent years and by performing a transplantation experiment with a duration of one year, respectively. Both multiple years and one year of exposure to acidified porewater conditions reduced the number of benthic bacterial operational taxonomic units and invertebrate species diversity by 30-80%. Reduced biodiversity at the vent sites increased the temporal variability in bacterial and nematode community biomass, abundance and composition. While the release from CO₂ exposure resulted in a full recovery of nematode species diversity within one year, bacterial diversity remained affected. Overall our findings showed that seawater acidification, induced by seafloor CO₂ emissions, was responsible for loss of diversity across different size-classes of benthic organisms, which reduced community stability with potential relapses on ecosystem resilience.

The Importance of Natural Acidified Systems in the Study of Ocean Acidification: What Have We Learned?

Human activity is generating an excess of atmospheric CO₂, resulting in what we know as ocean acidification, which produces changes in marine ecosystems. Until recently, most of the research in this area had been done under small-scale, laboratory conditions, using few variables, few species and few life cycle stages. These limitations raise questions about the reproducibility of the environment and about the importance of indirect effects and synergies in the final results of these experiments. One way to address these experimental problems is by conducting studies in situ, in natural areas where expected future pH conditions already occur, such as CO₂ vent systems. In the present work, we compile and discuss the latest research carried out in these natural laboratories, with the objective to summarize their advantages and disadvantages for research to improve these investigations so they can better help us understand how the oceans of the future will change.

Rising levels of temperature and CO2 antagonistically affect phytoplankton primary productivity in the South China Sea

Coastal and offshore waters in the South China Sea are warming and becoming acidified due to rising atmospheric levels of carbon dioxide (CO₂), yet the combined effects of these two stressors are poorly known. Here, we carried out shipboard incubations at ambient (398 μatm) and elevated (934 μatm) pCO₂ at in situ and in situ+1.8 °C temperatures and we measured primary productivity at two coastal and two offshore stations. Both warming and increased CO₂ levels individually increased phytoplankton productivity at all stations, but the combination of high temperature and high CO₂ did not, reflecting an antagonistic effect. Warming decreased Chl a concentrations in off-shore waters at ambient CO₂, but had no effect in the coastal waters. The high CO₂ treatment increased night time respiration in the coastal waters at ambient temperatures. Our findings show that phytoplankton assemblage responses to rising temperature and CO₂ levels differ between coastal and offshore waters. While it is difficult to predict how ongoing warming and acidification will influence primary productivity in the South China Sea, our data imply that predicted increases in temperature and pCO₂ will not boost surface phytoplankton primary productivity.

CO2 leakage alters biogeochemical and ecological functions of submarine sands

Subseabed CO2 storage is considered a future climate change mitigation technology. We investigated the ecological consequences of CO2 leakage for a marine benthic ecosystem. For the first time with a multidisciplinary integrated study, we tested hypotheses derived from a meta-analysis of previous experimental and in situ high-CO2 impact studies. For this, we compared ecological functions of naturally CO2-vented seafloor off the Mediterranean island Panarea (Tyrrhenian Sea, Italy) to those of nonvented sands, with a focus on biogeochemical processes and microbial and faunal community composition. High CO2 fluxes (up to 4 to 7 mol CO2 m-2 hour-1) dissolved all sedimentary carbonate, and comigration of silicate and iron led to local increases of microphytobenthos productivity (+450%) and standing stocks (+300%). Despite the higher food availability, faunal biomass (-80%) and trophic diversity were substantially lower compared to those at the reference site. Bacterial communities were also structurally and functionally affected, most notably in the composition of heterotrophs and microbial sulfate reduction rates (-90%). The observed ecological effects of CO2 leakage on submarine sands were reproduced with medium-term transplant experiments. This study assesses indicators of environmental impact by CO2 leakage and finds that community compositions and important ecological functions are permanently altered under high CO2.

Natural acidification changes the timing and rate of succession, alters community structure, and increases homogeneity in marine biofouling communities

Ocean acidification may have far-reaching consequences for marine community and ecosystem dynamics, but its full impacts remain poorly understood due to the difficulty of manipulating pCO₂ at the ecosystem level to mimic realistic fluctuations that occur on a number of different timescales. It is especially unclear how quickly communities at various stages of development respond to intermediate-scale pCO₂ change and, if high pCO₂ is relieved mid-succession, whether past acidification effects persist, are reversed by alleviation of pCO₂ stress, or are worsened by departures from prior high pCO₂ conditions to which organisms had acclimatized. Here, we used reciprocal transplant experiments along a shallow water volcanic pCO₂ gradient to assess the importance of the timing and duration of high pCO₂ exposure (i.e., discrete events at different stages of successional development vs. continuous exposure) on patterns of colonization and succession in a benthic fouling community. We show that succession at the acidified site was initially delayed (less community change by 8 weeks) but then caught up over the next 4 weeks. These changes in succession led to homogenization of communities maintained in or transplanted to acidified conditions, and altered community structure in ways that reflected both short- and longer-term acidification history. These community shifts are likely a result of interspecific variability in response to increased pCO₂ and changes in species interactions. High pCO₂ altered biofilm development, allowing serpulids to do best at the acidified site by the end of the experiment, although early (pretransplant) negative effects of pCO₂ on recruitment of these worms were still detectable. The ascidians Diplosoma sp. and Botryllus sp. settled later and were more tolerant to acidification. Overall, transient and persistent acidification-driven changes in the biofouling community, via both past and more recent exposure, could have important implications for ecosystem function and food web dynamics.

Effects of ocean acidification on the shells of four Mediterranean gastropod species near a CO2 seep

Marine CO₂ seeps allow the study of the long-term effects of elevated pCO₂ (ocean acidification) on marine invertebrate biomineralization. We investigated the effects of ocean acidification on shell composition and structure in four ecologically important species of Mediterranean gastropods (two limpets, a top-shell snail, and a whelk). Individuals were sampled from three sites near a volcanic CO₂ seep off Vulcano Island, Italy. The three sites represented ambient (8.15pH), moderate (8.03pH) and low (7.73pH) seawater mean pH. Shell mineralogy, microstructure, and mechanical strength were examined in all four species. We found that the calcite/aragonite ratio could vary and increased significantly with reduced pH in shells of one of the two limpet species. Moreover, each of the four gastropods displayed reductions in either inner shell toughness or elasticity at the Low pH site. These results suggest that near-future ocean acidification could alter shell biomineralization and structure in these common gastropods.

Tropical CO2 seeps reveal the impact of ocean acidification on coral reef invertebrate recruitment

Rising atmospheric CO₂ concentrations are causing ocean acidification by reducing seawater pH and carbonate saturation levels. Laboratory studies have demonstrated that many larval and juvenile marine invertebrates are vulnerable to these changes in surface ocean chemistry, but challenges remain in predicting effects at community and ecosystem levels. We investigated the effect of ocean acidification on invertebrate recruitment at two coral reef CO₂ seeps in Papua New Guinea. Invertebrate communities differed significantly between 'reference' (median pH7.97, 8.00), 'high CO₂' (median pH7.77, 7.79), and 'extreme CO₂' (median pH7.32, 7.68) conditions at each reef. There were also significant reductions in calcifying taxa, copepods and amphipods as CO₂ levels increased. The observed shifts in recruitment were comparable to those previously described in the Mediterranean, revealing an ecological mechanism by which shallow coastal systems are affected by near-future levels of ocean acidification.

Taiwanese marine microbenthic algal communities remain similar yet chlorophyll a concentrations rise in mesocosms with elevated CO2 and temperature

The effects of increasing CO₂ concentrations and temperature on microalgal assemblages were examined in Taiwan using mesocosms that simulate coral reef ecosystem. We assessed changes in abundance and diversity of benthic algae grown at 25°C and 28°C, under ambient (~400μatm) and at high CO₂ conditions (800-1000μatm). Total alkalinity, pCO₂, and the aragonite saturation state, were all significantly different between control and high CO₂ treatments in both temperature treatments. Chl a concentration increased significantly in CO₂-treated groups at 25°C, but benthic microalgal abundance was not significantly different. The number of microalgal species and the microalgal community structure did not differ between control and CO₂-treated groups at both temperatures. Our results suggest that increasing CO₂ may boost benthic microalgal primary productivity if sufficient nutrients are available, although site-specific responses are difficult to predict.

Photoprotective responses in a brown macroalgae Cystoseira tamariscifolia to increases in CO2 and temperature

Global warming and ocean acidification are increasingly affecting coastal ecosystems, with impacts that vary regionally depending upon local biogeography. Ocean acidification drives shifts in seaweed community dominance that depend on interactions with other factors such as light and nutrients. In this study, we investigated the photophysiological responses in the brown macroalgae species Cystoseira tamariscifolia (Hudson) Papenfuss with important structural role in the coastal Mediterranean communities. These algae were collected in the Cabo de Gata-Nijar Natural Park in ultraoligotrophic waters (algae exposed under high irradiance and less nutrient conditions) vs. those collected in the La Araña beach in oligotrophic waters (algae exposed at middle nutrient and irradiance conditions) in the Mediterranean Sea. They were incubated in mesocosms, under two levels of CO2; ambient (400-500 ppm) and high CO2 (1200-1300 ppm), combined with two temperatures (ambient temperature; 20 °C and ambient temperature + 4 °C; 24 °C) and the same nutrient conditions of the waters of the origin of macroalgae. Thalli from two sites on the Spanish Mediterranean coast were significantly affected by increases in pCO2 and temperature. The carotenoids (fucoxanthin, violaxanthin and β-carotene) contents were higher in algae from oligotrophic than that from ultraoligotrophic water, i.e., algae collected under higher nutrient conditions respect to less conditions, increase photoprotective pigments content. Thalli from both locations upregulated photosynthesis (as Fv/Fm) at increased pCO2 levels. Our study shows that ongoing ocean acidification and warming can increase photoprotection and photosynthesis in intertidal macroalgae.

Linking gene expression to productivity to unravel long- and short-term responses of seagrasses exposed to CO2 in volcanic vents

Ocean acidification is a major threat for marine life but seagrasses are expected to benefit from high CO₂. In situ (long-term) and transplanted (short-term) plant incubations of the seagrass Cymodocea nodosa were performed near and away the influence of volcanic CO₂ vents at Vulcano Island to test the hypothesis of beneficial effects of CO₂ on plant productivity. We relate, for the first time, the expression of photosynthetic, antioxidant and metal detoxification-related genes to net plant productivity (NPP). Results revealed a consistent pattern between gene expression and productivity indicating water origin as the main source of variability. However, the hypothesised beneficial effect of high CO₂ around vents was not supported. We observed a consistent long- and short-term pattern of gene down-regulation and 2.5-fold NPP decrease in plants incubated in water from the vents and a generalized up-regulation and NPP increase in plants from the vent site incubated with water from the Reference site. Contrastingly, NPP of specimens experimentally exposed to a CO₂ range significantly correlated with CO₂ availability. The down-regulation of metal-related genes in C. nodosa leaves exposed to water from the venting site suggests that other factors than heavy metals, may be at play at Vulcano confounding the CO₂ effects.

The stable microbiome of inter and sub-tidal anemone species under increasing pCO2

Increasing levels of pCO2 within the oceans will select for resistant organisms such as anemones, which may thrive under ocean acidification conditions. However, increasing pCO2 may alter the bacterial community of marine organisms, significantly affecting the health status of the host. A pH gradient associated with a natural volcanic vent system within Levante Bay, Vulcano Island, Italy, was used to test the effects of ocean acidification on the bacterial community of two anemone species in situ, Anemonia viridis and Actinia equina using 16 S rDNA pyrosequencing. Results showed the bacterial community of the two anemone species differed significantly from each other primarily because of differences in the Gammaproteobacteria and Epsilonproteobacteria abundances. The bacterial communities did not differ within species among sites with decreasing pH except for A. viridis at the vent site (pH = 6.05). In addition to low pH, the vent site contains trace metals and sulfide that may have influenced the bacteria community of A. viridis. The stability of the bacterial community from pH 8.1 to pH 7.4, coupled with previous experiments showing the lack of, or beneficial changes within anemones living under low pH conditions indicates that A. viridis and A. equina will be winners under future ocean acidification scenarios.

Microphytobenthic community composition and primary production at gas and thermal vents in the Aeolian Islands (Tyrrhenian Sea, Italy)

Sediment samplings were performed to investigate the microphytobenthic community and photosynthetic activity adaptations to gas emissions and higher temperature in the Aeolian Islands during a three-year period (2012-2014). Higher microphytobenthic densities were recorded at the vent stations and values were even more pronounced in relation with high temperature. The gross primary production estimates strongly depended on microphytobenthic abundance values reaching up to 45.79 ± 6.14 mgC m(-2) h(-1). High abundances were coupled with low community richness and diversity. Motile diatom living forms were predominant at all stations and the greatest differences among vent and reference stations were detected on the account of the tychopelagic forms. Morphological deformities and heavily silicified diatom frustules were also observed. A significant influence of the gas emission and high temperature on the phototrophic community was highlighted suggesting the Aeolian Islands as a good natural laboratory for studies on high CO2 and global warming effects.