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Chen J, Benedyk A, Moldavski A, Tost H, Meyer-Lindenberg A, Braun U, Durstewitz D, Koppe G, Schwarz E. Quantifying brain-functional dynamics using deep dynamical systems: Technical considerations. iScience 2024; 27:110545. [PMID: 39165842 PMCID: PMC11334782 DOI: 10.1016/j.isci.2024.110545] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2024] [Revised: 06/12/2024] [Accepted: 07/16/2024] [Indexed: 08/22/2024] Open
Abstract
Both mental health and mental illness unfold in complex and unpredictable ways. Novel artificial intelligence approaches from the area of dynamical systems reconstruction can characterize such dynamics and help understand the underlying brain mechanisms, which can also be used as potential biomarkers. However, applying deep learning to model dynamical systems at the individual level must overcome numerous computational challenges to be reproducible and clinically useful. In this study, we performed an extensive analysis of these challenges using generative modeling of brain dynamics from fMRI data as an example and demonstrated their impact on classifying patients with schizophrenia and major depression. This study highlights the tendency of deep learning models to identify functionally unique solutions during parameter optimization, which severely impacts the reproducibility of downstream predictions. We hope this study guides the future development of individual-level generative models and similar machine learning approaches aimed at identifying reproducible biomarkers of mental illness.
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Affiliation(s)
- Jiarui Chen
- Hector Institute for Artificial Intelligence in Psychiatry, Central Institute of Mental Health, Medical Faculty Mannheim, Heidelberg University, M7, 68161 Mannheim, Germany
- Department of Psychiatry and Psychotherapy, Central Institute of Mental Health, Medical Faculty Mannheim, Heidelberg University, J5, 68159 Mannheim, Germany
| | - Anastasia Benedyk
- Department of Psychiatry and Psychotherapy, Central Institute of Mental Health, Medical Faculty Mannheim, Heidelberg University, J5, 68159 Mannheim, Germany
- German Center for Mental Health (DZPG), Partner Site Mannheim, 68159 Mannheim, Germany
| | - Alexander Moldavski
- Department of Psychiatry and Psychotherapy, Central Institute of Mental Health, Medical Faculty Mannheim, Heidelberg University, J5, 68159 Mannheim, Germany
- German Center for Mental Health (DZPG), Partner Site Mannheim, 68159 Mannheim, Germany
| | - Heike Tost
- Department of Psychiatry and Psychotherapy, Central Institute of Mental Health, Medical Faculty Mannheim, Heidelberg University, J5, 68159 Mannheim, Germany
- German Center for Mental Health (DZPG), Partner Site Mannheim, 68159 Mannheim, Germany
| | - Andreas Meyer-Lindenberg
- Hector Institute for Artificial Intelligence in Psychiatry, Central Institute of Mental Health, Medical Faculty Mannheim, Heidelberg University, M7, 68161 Mannheim, Germany
- Department of Psychiatry and Psychotherapy, Central Institute of Mental Health, Medical Faculty Mannheim, Heidelberg University, J5, 68159 Mannheim, Germany
- German Center for Mental Health (DZPG), Partner Site Mannheim, 68159 Mannheim, Germany
| | - Urs Braun
- Hector Institute for Artificial Intelligence in Psychiatry, Central Institute of Mental Health, Medical Faculty Mannheim, Heidelberg University, M7, 68161 Mannheim, Germany
- Department of Psychiatry and Psychotherapy, Central Institute of Mental Health, Medical Faculty Mannheim, Heidelberg University, J5, 68159 Mannheim, Germany
- German Center for Mental Health (DZPG), Partner Site Mannheim, 68159 Mannheim, Germany
| | - Daniel Durstewitz
- Department of Theoretical Neuroscience, Central Institute of Mental Health, Medical Faculty Mannheim, Heidelberg University, J5, 68159 Mannheim, Germany
- Interdisciplinary Center for Scientific Computing, Heidelberg University, J5, 68159 Mannheim, Germany
- Faculty of Physics and Astronomy, Heidelberg University, J5, 68159 Mannheim, Germany
| | - Georgia Koppe
- Hector Institute for Artificial Intelligence in Psychiatry, Central Institute of Mental Health, Medical Faculty Mannheim, Heidelberg University, M7, 68161 Mannheim, Germany
- Department of Psychiatry and Psychotherapy, Central Institute of Mental Health, Medical Faculty Mannheim, Heidelberg University, J5, 68159 Mannheim, Germany
- Department of Theoretical Neuroscience, Central Institute of Mental Health, Medical Faculty Mannheim, Heidelberg University, J5, 68159 Mannheim, Germany
- Interdisciplinary Center for Scientific Computing, Heidelberg University, J5, 68159 Mannheim, Germany
| | - Emanuel Schwarz
- Hector Institute for Artificial Intelligence in Psychiatry, Central Institute of Mental Health, Medical Faculty Mannheim, Heidelberg University, M7, 68161 Mannheim, Germany
- Department of Psychiatry and Psychotherapy, Central Institute of Mental Health, Medical Faculty Mannheim, Heidelberg University, J5, 68159 Mannheim, Germany
- German Center for Mental Health (DZPG), Partner Site Mannheim, 68159 Mannheim, Germany
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Kuba M, Kremláček J, Vít F, Masopust J, Hubeňák J, Kubová Z, Szanyi J, Ramešová L, Chutná M, Langrová J. New portable device for an examination of visual cognitive evoked potentials might extend their diagnostic applications in psychiatry. Psychiatry Res Neuroimaging 2024; 337:111768. [PMID: 38128365 DOI: 10.1016/j.pscychresns.2023.111768] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 02/02/2023] [Revised: 11/16/2023] [Accepted: 11/26/2023] [Indexed: 12/23/2023]
Abstract
Despite positive prior results obtained by using event-related potentials (ERPs) in psychiatric patients, they are not routinely used in the clinical setting. This may in part be due to problems regarding a lack of transportable equipment availability. It can be difficult for these patients to repeatedly visit electrophysiological laboratories. To address this issue, we propose using a new, fully portable device for visually evoked potentials (VEP) and cognitive function assessment, that can be used for quick examinations (https://www.veppeak.com). Our device, called "VEPpeak", is built into a headset with a color LED visual stimulator. It weighs 390 g and is connected to a notebook (PC) with evaluation software via USB. In this pilot study, we verified the device's usability in 31 patients with schizophrenia. We used the oddball paradigm with the recognition of colors for the P300 wave and choice reaction time evaluation. The examination lasted only about ten minutes. The results indicated good reproducibility of large cognitive potentials (P300) with prolonged P300 latencies and reduced amplitudes in patients compared to 15 control subjects. The P300 latency and reaction time prolongation in patients correlated with their age and the sedative effect of the pharmacotherapy.
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Affiliation(s)
- Miroslav Kuba
- Electrophysiological lab, Department of Pathophysiology, Charles University - Faculty of Medicine in Hradec Králové, Czech Republic.
| | - Jan Kremláček
- Electrophysiological lab, Department of Medical Biophysics, Charles University - Faculty of Medicine in Hradec Králové, Czech Republic
| | - František Vít
- Electrophysiological lab, Department of Pathophysiology, Charles University - Faculty of Medicine in Hradec Králové, Czech Republic
| | - Jiří Masopust
- Department of Psychiatry, University Hospital in Hradec Králové, Czech Republic
| | - Jan Hubeňák
- Department of Psychiatry, University Hospital in Hradec Králové, Czech Republic
| | - Zuzana Kubová
- Electrophysiological lab, Department of Pathophysiology, Charles University - Faculty of Medicine in Hradec Králové, Czech Republic
| | - Jana Szanyi
- Electrophysiological lab, Department of Pathophysiology, Charles University - Faculty of Medicine in Hradec Králové, Czech Republic
| | - Lenka Ramešová
- Electrophysiological lab, Department of Pathophysiology, Charles University - Faculty of Medicine in Hradec Králové, Czech Republic
| | - Marie Chutná
- Electrophysiological lab, Department of Pathophysiology, Charles University - Faculty of Medicine in Hradec Králové, Czech Republic
| | - Jana Langrová
- Electrophysiological lab, Department of Pathophysiology, Charles University - Faculty of Medicine in Hradec Králové, Czech Republic
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Fusar-Poli L, Aguglia A, Albert U. Editorial: Early identification of affective and non-affective psychoses: From psychopathology to biomarkers. Front Psychiatry 2023; 14:1144943. [PMID: 36815189 PMCID: PMC9939889 DOI: 10.3389/fpsyt.2023.1144943] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 01/15/2023] [Accepted: 01/25/2023] [Indexed: 02/09/2023] Open
Affiliation(s)
- Laura Fusar-Poli
- Department of Brain and Behavioral Sciences, University of Pavia, Pavia, Italy
| | - Andrea Aguglia
- Section of Psychiatry, Department of Neuroscience, Rehabilitation, Ophthalmology, Genetics, Maternal and Child Health, University of Genoa, Genoa, Italy.,IRCCS Ospedale Policlinico San Martino, Genoa, Italy
| | - Umberto Albert
- Department of Medicine, Surgery and Health Sciences, University of Trieste, Trieste, Italy.,Azienda Sanitaria Integrata Giuliano-Isontina - ASUGI, UCO Clinica Psichiatrica, Trieste, Italy
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