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Ye Z, Huang R, Zhou W, Wang M, Cai T, He Q, Zhang P, Zhang Y. Hybrid rice optimization algorithm inspired grey wolf optimizer for high-dimensional feature selection. Sci Rep 2024; 14:30741. [PMID: 39730449 DOI: 10.1038/s41598-024-80648-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2024] [Accepted: 11/21/2024] [Indexed: 12/29/2024] Open
Abstract
Feature selection (FS) is a significant dimensionality reduction technique, which can effectively remove redundant features. Metaheuristic algorithms have been widely employed in FS, and have obtained satisfactory performance, among them, grey wolf optimizer (GWO) has received widespread attention. However, the GWO and its variants suffer from limited adaptability, poor diversity, and low accuracy when faced with high-dimensional data. The hybrid rice optimization (HRO) algorithm is an emerging metaheuristic algorithm derived from the hybrid heterosis and breeding mechanism in nature. It possesses a robust capacity to identify and converge towards optimal solutions. Therefore, a novel approach based on multi-strategy collaborative GWO combined with the HRO algorithm (HRO-GWO) for FS is proposed in this paper. The HRO-GWO algorithm is enhanced by four innovative strategies including dynamical regulation strategy and three search strategies. First, to improve the adaptability of GWO, the dynamical regulation strategy is devised for parameter optimization of GWO. Then, a multi-strategy co-evolution model inspired by HRO is designed, which utilizes neighborhood search, dual-crossover, and selfing techniques to bolster population diversity. Finally, the study develops a hybrid filter-wrapper framework incorporating chi-square and the HRO-GWO algorithm to efficiently select pertinent and informative feature subsets, enhancing the classification performance while conserving time. The performance of HRO-GWO has been rigorously assessed across benchmark functions and the effectiveness of the proposed framework has been evaluated on small-sample high-dimensional biomedical datasets. Our experimental findings demonstrate that the approach on the basis of HRO-GWO outperforms state-of-the-art methods.
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Affiliation(s)
- Zhiwei Ye
- School of Computer Science, Hubei University of Technology, Wuhan, 430068, China
- Hubei Key Laboratory of Green Intelligent Computing Power Network, Wuhan, 430068, China
| | - Ruoxuan Huang
- School of Computer Science, Hubei University of Technology, Wuhan, 430068, China
| | - Wen Zhou
- School of Computer Science, Hubei University of Technology, Wuhan, 430068, China.
- Hubei Key Laboratory of Green Intelligent Computing Power Network, Wuhan, 430068, China.
| | - Mingwei Wang
- School of Computer Science, Hubei University of Technology, Wuhan, 430068, China
- Hubei Key Laboratory of Green Intelligent Computing Power Network, Wuhan, 430068, China
| | - Ting Cai
- School of Computer Science, Hubei University of Technology, Wuhan, 430068, China
- Hubei Key Laboratory of Green Intelligent Computing Power Network, Wuhan, 430068, China
| | - Qiyi He
- School of Computer Science, Hubei University of Technology, Wuhan, 430068, China
- Hubei Key Laboratory of Green Intelligent Computing Power Network, Wuhan, 430068, China
| | - Peng Zhang
- Wuhan Fiberhome Technical Services Co., Ltd, Wuhan, 430205, China
| | - Yuquan Zhang
- Wuhan Fiberhome Technical Services Co., Ltd, Wuhan, 430205, China
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Gao P, Li H, Qiao Y, Nie J, Cheng S, Tang G, Dai X, Cheng H. A cuproptosis-related gene DLAT as a novel prognostic marker and its relevance to immune infiltration in low-grade gliomas. Heliyon 2024; 10:e32270. [PMID: 38961981 PMCID: PMC11219321 DOI: 10.1016/j.heliyon.2024.e32270] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2023] [Revised: 05/24/2024] [Accepted: 05/30/2024] [Indexed: 07/05/2024] Open
Abstract
DLAT has been recognized as a cuproptosis-related gene that is crucial for cuproptosis in earlier research. The study is to look at how DLAT affects individuals with low-grade glioma's prognosis and immune infiltration. The Genotype-Tissue Expression (GTEx) database and the TCGA database were used in this work to download RNAseq data in TPM format. DLAT was found to be overexpressed in LGG by comparing DLAT expression levels between LGG and normal brain tissue, and the expression of DLAT was verified by immunohistochemistry and semi-quantitative analysis. Then, the functional enrichment analysis revealed that the biological functional pathways and possible signal transduction pathways involved were primarily focused on extracellular matrix organization, transmembrane transporter complex, ion channel complex, channel activity, neuroactive ligand-receptor interaction, complement and coagulation cascades, and channel activity. The level of immune cell infiltration by plasmacytoid dendritic cells and CD8 T cells was subsequently evaluated using single-sample gene set enrichment analysis, which showed that high DLAT expression was inversely connected with that level of infiltration. The link between the methylation and mRNA transcription of DLAT was then further investigated via the MethSurv database, and the results showed that DLAT's hypomethylation status was linked to a poor outcome. Finally, by evaluating the prognostic value of DLAT using the Cox regression analysis and Kaplan-Meier technique, a column line graph was created to forecast the overall survival (OS) rate at 1, 3, and 5 years after LGG identification. The aforementioned results demonstrated that high DLAT expression significantly decreased OS and DSS, and that overexpression of DLAT in LGG was significantly linked with WHO grade, IDH status, primary therapy outcome, overall survival (OS), disease-specific survival (DSS), and progression-free interval (PFI) events. DLAT was discovered as a separate predictive sign of OS in the end. DLAT might thus represent a brand-new predictive biomarker.
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Affiliation(s)
- Peng Gao
- Department of Neurosurgery, Affiliated Jinling Hospital, Medical School of Nanjing University, Nanjing, 210002, PR China
- Department of Neurosurgery, The First Affiliated Hospital of Anhui Medical University, Hefei, 230022, PR China
| | - Huaixu Li
- Department of Neurosurgery, The First Affiliated Hospital of Anhui Medical University, Hefei, 230022, PR China
| | - Yang Qiao
- Department of Neurosurgery, The First Affiliated Hospital of Anhui Medical University, Hefei, 230022, PR China
| | - Jianyu Nie
- Department of Neurosurgery, The First Affiliated Hospital of Anhui Medical University, Hefei, 230022, PR China
| | - Sheng Cheng
- Department of Clinical Medicine, The First Clinical College of Anhui Medical University, Hefei, 230022, PR China
| | - Guozhang Tang
- Department of Clinical Medicine, The Second Clinical College of Anhui Medical University, Hefei, 230022, PR China
| | - Xingliang Dai
- Department of Neurosurgery, The First Affiliated Hospital of Anhui Medical University, Hefei, 230022, PR China
- Department of Research & Development, East China Institute of Digital Medical Engineering, Shangrao, 334000, PR China
| | - Hongwei Cheng
- Department of Neurosurgery, The First Affiliated Hospital of Anhui Medical University, Hefei, 230022, PR China
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Battaglia C, Manti F, Mazzuca D, Cutruzzolà A, Corte MD, Caputo F, Gratteri S, Laganà D. Impact of the COVID-19 pandemic and COVID vaccination campaign on imaging case volumes and medicolegal aspects. FRONTIERS IN HEALTH SERVICES 2024; 4:1253905. [PMID: 38487373 PMCID: PMC10937363 DOI: 10.3389/frhs.2024.1253905] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/11/2023] [Accepted: 02/14/2024] [Indexed: 03/17/2024]
Abstract
Purpose The coronavirus pandemic (COVID-19) significantly impacted the global economy and health. Italy was one of the first and most affected countries. The objective of our study was to assess the impact of the pandemic and the vaccination campaign on the radiological examinations performed in a radiology department of a tertiary center in Southern Italy. Materials and methods We analyzed weekly and retrospectively electronic medical records of case volumes performed at the Radiology Department of "Mater Domini" University Hospital of Catanzaro from March 2020 to March 2022, comparing them with the volumes in the same period of the year 2019. We considered the origin of patients (outpatient, inpatient) and the type of examinations carried out (x-ray, mammography, CT, MRI, and ultrasound). A non-parametric test (Wilcoxon Signed Rank test) was applied to evaluate the average volumes. Results Total flows in the pandemic period from COVID-19 were lower than in the same pre-pandemic period with values of 552 (120) vs. 427 (149) median (IQR) (p < 0.001). The vaccination campaign allowed the resumption of the pre-vaccination pandemic with total flows 563 (113) vs. 427 (149) median (IQR) p < 0.001. In the post-vaccination period, the number of examinations was found to overlap with the pre-COVID period. Conclusion The pandemic impacted the volume of radiological examinations performed, particularly with the reduction of tests in outpatients. The vaccination allowed the return to the pre-COVID period imaging case volumes.
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Affiliation(s)
- Caterina Battaglia
- Department of Experimental and Clinical Medicine, “Magna Graecia” University, Catanzaro, Italy
| | - Francesco Manti
- Department of Experimental and Clinical Medicine, “Magna Graecia” University, Catanzaro, Italy
| | - Daniela Mazzuca
- Department of Surgical and Medical Sciences, University “Magna Græcia” of Catanzaro, Catanzaro, Italy
| | - Antonio Cutruzzolà
- Department of Experimental and Clinical Medicine, “Magna Graecia” University, Catanzaro, Italy
| | - Marcello Della Corte
- Department of Surgical and Medical Sciences, University “Magna Græcia” of Catanzaro, Catanzaro, Italy
| | - Fiorella Caputo
- Department of Surgical and Medical Sciences, University “Magna Græcia” of Catanzaro, Catanzaro, Italy
| | - Santo Gratteri
- Department of Surgical and Medical Sciences, University “Magna Græcia” of Catanzaro, Catanzaro, Italy
| | - Domenico Laganà
- Department of Experimental and Clinical Medicine, “Magna Graecia” University, Catanzaro, Italy
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Khan S, Alzaabi A, Ratnarajah T, Arslan T. Novel statistical time series data augmentation and machine learning based classification of unobtrusive respiration data for respiration Digital Twin model. Comput Biol Med 2024; 168:107825. [PMID: 38061156 DOI: 10.1016/j.compbiomed.2023.107825] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2023] [Revised: 11/29/2023] [Accepted: 12/04/2023] [Indexed: 01/10/2024]
Abstract
Digital Twin (DT), a concept of Healthcare (4.0), represents the subject's biological properties and characteristics in a digital model. DT can help in monitoring respiratory failures, enabling timely interventions, personalized treatment plans to improve healthcare, and decision-support for healthcare professionals. Large-scale implementation of DT technology requires extensive patient data for accurate monitoring and decision-making with Machine Learning (ML) and Deep Learning (DL). Initial respiration data was collected unobtrusively with the ESP32 Wi-Fi Channel State Information (CSI) sensor. Due to limited respiration data availability, the paper proposes a novel statistical time series data augmentation method for generating larger synthetic respiration data. To ensure accuracy and validity in the augmentation method, correlation methods (Pearson, Spearman, and Kendall) are implemented to provide a comparative analysis of experimental and synthetic datasets. Data processing methodologies of denoising (smoothing and filtering) and dimensionality reduction with Principal Component Analysis (PCA) are implemented to estimate a patient's Breaths Per Minute (BPM) from raw respiration sensor data and the synthetic version. The methodology provided the BPM estimation accuracy of 92.3% from raw respiration data. It was observed that out of 27 supervised classifications with k-fold cross-validation, the Bagged Tree ensemble algorithm provided the best ML-supervised classification. In the case of binary-class and multi-class, the Bagged Tree ensemble showed accuracies of 89.2% and 83.7% respectively with combined real and synthetic respiration dataset with the larger synthetic dataset. Overall, this provides a blueprint of methodologies for the development of the respiration DT model.
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Affiliation(s)
- Sagheer Khan
- School of Engineering, The University of Edinburgh, Edinburgh EH9 3FF, UK.
| | - Aaesha Alzaabi
- School of Engineering, The University of Edinburgh, Edinburgh EH9 3FF, UK
| | | | - Tughrul Arslan
- School of Engineering, The University of Edinburgh, Edinburgh EH9 3FF, UK; Advanced Care Research Centre (ACRC), The University of Edinburgh, Edinburgh, EH16 4UX, UK
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Saju B, Tressa N, Dhanaraj RK, Tharewal S, Mathew JC, Pelusi D. Effective multi-class lungdisease classification using the hybridfeature engineering mechanism. MATHEMATICAL BIOSCIENCES AND ENGINEERING : MBE 2023; 20:20245-20273. [PMID: 38052644 DOI: 10.3934/mbe.2023896] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/07/2023]
Abstract
The utilization of computational models in the field of medical image classification is an ongoing and unstoppable trend, driven by the pursuit of aiding medical professionals in achieving swift and precise diagnoses. Post COVID-19, many researchers are studying better classification and diagnosis of lung diseases particularly, as it was reported that one of the very few diseases greatly affecting human beings was related to lungs. This research study, as presented in the paper, introduces an advanced computer-assisted model that is specifically tailored for the classification of 13 lung diseases using deep learning techniques, with a focus on analyzing chest radiograph images. The work flows from data collection, image quality enhancement, feature extraction to a comparative classification performance analysis. For data collection, an open-source data set consisting of 112,000 chest X-Ray images was used. Since, the quality of the pictures was significant for the work, enhanced image quality is achieved through preprocessing techniques such as Otsu-based binary conversion, contrast limited adaptive histogram equalization-driven noise reduction, and Canny edge detection. Feature extraction incorporates connected regions, histogram of oriented gradients, gray-level co-occurrence matrix and Haar wavelet transformation, complemented by feature selection via regularized neighbourhood component analysis. The paper proposes an optimized hybrid model, improved Aquila optimization convolutional neural networks (CNN), which is a combination of optimized CNN and DENSENET121 with applied batch equalization, which provides novelty for the model compared with other similar works. The comparative evaluation of classification performance among CNN, DENSENET121 and the proposed hybrid model is also done to find the results. The findings highlight the proposed hybrid model's supremacy, boasting 97.00% accuracy, 94.00% precision, 96.00% sensitivity, 96.00% specificity and 95.00% F1-score. In the future, potential avenues encompass exploring explainable machine learning for discerning model decisions and optimizing performance through strategic model restructuring.
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Affiliation(s)
- Binju Saju
- Department of Master of Computer Applications, New Horizon College of Engineering, Bengaluru, India
| | - Neethu Tressa
- Department of Master of Computer Applications, New Horizon College of Engineering, Bengaluru, India
| | - Rajesh Kumar Dhanaraj
- Symbiosis Institute of Computer Studies and Research (SICSR), Symbiosis International University, Pune, India
| | - Sumegh Tharewal
- Symbiosis Institute of Computer Studies and Research (SICSR), Symbiosis International University, Pune, India
| | | | - Danilo Pelusi
- Department of Communication Sciences, University of Teramo, Teramo, Italy
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Rao PK, Chatterjee S, Janardhan M, Nagaraju K, Khan SB, Almusharraf A, Alharbe AI. Optimizing Inference Distribution for Efficient Kidney Tumor Segmentation Using a UNet-PWP Deep-Learning Model with XAI on CT Scan Images. Diagnostics (Basel) 2023; 13:3244. [PMID: 37892065 PMCID: PMC10606269 DOI: 10.3390/diagnostics13203244] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2023] [Revised: 10/10/2023] [Accepted: 10/10/2023] [Indexed: 10/29/2023] Open
Abstract
Kidney tumors represent a significant medical challenge, characterized by their often-asymptomatic nature and the need for early detection to facilitate timely and effective intervention. Although neural networks have shown great promise in disease prediction, their computational demands have limited their practicality in clinical settings. This study introduces a novel methodology, the UNet-PWP architecture, tailored explicitly for kidney tumor segmentation, designed to optimize resource utilization and overcome computational complexity constraints. A key novelty in our approach is the application of adaptive partitioning, which deconstructs the intricate UNet architecture into smaller submodels. This partitioning strategy reduces computational requirements and enhances the model's efficiency in processing kidney tumor images. Additionally, we augment the UNet's depth by incorporating pre-trained weights, therefore significantly boosting its capacity to handle intricate and detailed segmentation tasks. Furthermore, we employ weight-pruning techniques to eliminate redundant zero-weighted parameters, further streamlining the UNet-PWP model without compromising its performance. To rigorously assess the effectiveness of our proposed UNet-PWP model, we conducted a comparative evaluation alongside the DeepLab V3+ model, both trained on the "KiTs 19, 21, and 23" kidney tumor dataset. Our results are optimistic, with the UNet-PWP model achieving an exceptional accuracy rate of 97.01% on both the training and test datasets, surpassing the DeepLab V3+ model in performance. Furthermore, to ensure our model's results are easily understandable and explainable. We included a fusion of the attention and Grad-CAM XAI methods. This approach provides valuable insights into the decision-making process of our model and the regions of interest that affect its predictions. In the medical field, this interpretability aspect is crucial for healthcare professionals to trust and comprehend the model's reasoning.
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Affiliation(s)
- P. Kiran Rao
- Artificial Intelligence, Department of Computer Science and Engineering, Ravindra College of Engineering for Women, Kurnool 518001, India
- Department of Computer Science and Engineering, Faculty of Engineering, MS Ramaiah University of Applied Sciences, Bengaluru 560058, India;
| | - Subarna Chatterjee
- Department of Computer Science and Engineering, Faculty of Engineering, MS Ramaiah University of Applied Sciences, Bengaluru 560058, India;
| | - M. Janardhan
- Artificial Intelligence, Department of Computer Science and Engineering, G. Pullaiah College of Engineering and Technology, Kurnool 518008, India;
| | - K. Nagaraju
- Department of Computer Science and Engineering, Indian Institute of Information Technology Design and Manufacturing Kurnool, Kurnool 518008, India;
| | - Surbhi Bhatia Khan
- Department of Data Science, School of Science, Engineering and Environment, University of Salford, Salford M5 4WT, UK
- Department of Electrical and Computer Engineering, Lebanese American University, Byblos 13-5053, Lebanon
| | - Ahlam Almusharraf
- Department of Business Administration, College of Business and Administration, Princess Nourah bint Abdulrahman University, P.O. Box 84428, Riyadh 11671, Saudi Arabia;
| | - Abdullah I. Alharbe
- Department of Computer Science, Faculty of Computing and Information Technology, King Abdulaziz University, Rabigh 21911, Saudi Arabia
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Lee H, Lee Y, Jo M, Nam S, Jo J, Lee C. Enhancing Diagnosis of Rotating Elements in Roll-to-Roll Manufacturing Systems through Feature Selection Approach Considering Overlapping Data Density and Distance Analysis. SENSORS (BASEL, SWITZERLAND) 2023; 23:7857. [PMID: 37765913 PMCID: PMC10534779 DOI: 10.3390/s23187857] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/31/2023] [Revised: 09/01/2023] [Accepted: 09/11/2023] [Indexed: 09/29/2023]
Abstract
Roll-to-roll manufacturing systems have been widely adopted for their cost-effectiveness, eco-friendliness, and mass-production capabilities, utilizing thin and flexible substrates. However, in these systems, defects in the rotating components such as the rollers and bearings can result in severe defects in the functional layers. Therefore, the development of an intelligent diagnostic model is crucial for effectively identifying these rotating component defects. In this study, a quantitative feature-selection method, feature partial density, to develop high-efficiency diagnostic models was proposed. The feature combinations extracted from the measured signals were evaluated based on the partial density, which is the density of the remaining data excluding the highest class in overlapping regions and the Mahalanobis distance by class to assess the classification performance of the models. The validity of the proposed algorithm was verified through the construction of ranked model groups and comparison with existing feature-selection methods. The high-ranking group selected by the algorithm outperformed the other groups in terms of training time, accuracy, and positive predictive value. Moreover, the top feature combination demonstrated superior performance across all indicators compared to existing methods.
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Affiliation(s)
- Haemi Lee
- Department of Mechanical Design and Production Engineering, Konkuk University, 120 Neungdong-ro, Gwangjin-gu, Seoul 05030, Republic of Korea
| | - Yoonjae Lee
- Department of Mechanical Design and Production Engineering, Konkuk University, 120 Neungdong-ro, Gwangjin-gu, Seoul 05030, Republic of Korea
| | - Minho Jo
- Department of Mechanical Design and Production Engineering, Konkuk University, 120 Neungdong-ro, Gwangjin-gu, Seoul 05030, Republic of Korea
| | - Sanghoon Nam
- Department of Mechanical Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
| | - Jeongdai Jo
- Department of Printed Electronics, Korea Institute of Machinery and Materials, 156, Gajeongbuk-ro, Yuseong-gu, Daejeon 34103, Republic of Korea
| | - Changwoo Lee
- Department of Mechanical and Aerospace Engineering, Konkuk University, 120 Neungdong-ro, Gwangjin-gu, Seoul 05030, Republic of Korea
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Wang H, Wang R, Fang J. A spliceosome-associated gene signature aids in predicting prognosis and tumor microenvironment of hepatocellular carcinoma. Aging (Albany NY) 2023; 15:204765. [PMID: 37301543 PMCID: PMC10292887 DOI: 10.18632/aging.204765] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2023] [Accepted: 05/17/2023] [Indexed: 06/12/2023]
Abstract
Splicing alterations have been shown to be key tumorigenesis drivers. In this study, we identified a novel spliceosome-related genes (SRGs) signature to predict the overall survival (OS) of patients with hepatocellular carcinoma (HCC). A total of 25 SRGs were identified from the GSE14520 dataset (training set). Univariate and least absolute shrinkage and selection operator (LASSO) regression analyses were utilized to construct the signature using genes with predictive significance. We then constructed a risk model using six SRGs (BUB3, IGF2BP3, RBM3, ILF3, ZC3H13, and CCT3). The reliability and predictive power of the gene signature were validated in two validation sets (TCGA and GSE76427 dataset). Patients in training and validation sets were divided into high and low-risk groups based on the gene signature. Patients in high-risk groups exhibited a poorer OS than in low-risk groups both in the training set and two validation sets. Next, risk score, BCLC staging, TNM staging, and multinodular were combined in a nomogram for OS prediction, and the decision curve analysis (DCA) curve exhibited the excellent prediction performance of the nomogram. The functional enrichment analyses demonstrated high-risk score patients were closely related to multiple oncology characteristics and invasive-related pathways, such as Cell cycle, DNA replication, and Spliceosome. Different compositions of the tumor microenvironment and immunocyte infiltration ratio might contribute to the prognostic difference between high and low-risk score groups. In conclusion, a spliceosome-related six-gene signature exhibited good performance for predicting the OS of patients with HCC, which may aid in clinical decision-making for individual treatment.
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Affiliation(s)
- Huaxiang Wang
- Department of Hepatobiliary and Pancreatic Surgery, Taihe Hospital, Affiliated Hospital of Hubei University of Medicine, Shiyan 442000, Hubei, China
| | - Ruling Wang
- Department of Hepatobiliary and Pancreatic Surgery, Taihe Hospital, Affiliated Hospital of Hubei University of Medicine, Shiyan 442000, Hubei, China
| | - Jian Fang
- Department of Hepatobiliary Medicine, The Third People’s Hospital of Fujian University of Traditional Chinese Medicine, Fuzhou 350108, Fujian, China
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Chen H, Wang Z, Wu D, Jia H, Wen C, Rao H, Abualigah L. An improved multi-strategy beluga whale optimization for global optimization problems. MATHEMATICAL BIOSCIENCES AND ENGINEERING : MBE 2023; 20:13267-13317. [PMID: 37501488 DOI: 10.3934/mbe.2023592] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/29/2023]
Abstract
This paper presents an improved beluga whale optimization (IBWO) algorithm, which is mainly used to solve global optimization problems and engineering problems. This improvement is proposed to solve the imbalance between exploration and exploitation and to solve the problem of insufficient convergence accuracy and speed of beluga whale optimization (BWO). In IBWO, we use a new group action strategy (GAS), which replaces the exploration phase in BWO. It was inspired by the group hunting behavior of beluga whales in nature. The GAS keeps individual belugas whales together, allowing them to hide together from the threat posed by their natural enemy, the tiger shark. It also enables the exchange of location information between individual belugas whales to enhance the balance between local and global lookups. On this basis, the dynamic pinhole imaging strategy (DPIS) and quadratic interpolation strategy (QIS) are added to improve the global optimization ability and search rate of IBWO and maintain diversity. In a comparison experiment, the performance of the optimization algorithm (IBWO) was tested by using CEC2017 and CEC2020 benchmark functions of different dimensions. Performance was analyzed by observing experimental data, convergence curves, and box graphs, and the results were tested using the Wilcoxon rank sum test. The results show that IBWO has good optimization performance and robustness. Finally, the applicability of IBWO to practical engineering problems is verified by five engineering problems.
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Affiliation(s)
- Hongmin Chen
- School of Information Engineering, Sanming University, Sanming 365004, China
| | - Zhuo Wang
- School of Information Engineering, Sanming University, Sanming 365004, China
| | - Di Wu
- School of Education and Music, Sanming University, Sanming 365004, China
| | - Heming Jia
- School of Information Engineering, Sanming University, Sanming 365004, China
| | - Changsheng Wen
- School of Information Engineering, Sanming University, Sanming 365004, China
| | - Honghua Rao
- School of Information Engineering, Sanming University, Sanming 365004, China
| | - Laith Abualigah
- Prince Hussein Bin Abdullah College for Information Technology, Al Al-Bayt University, Mafraq 130040, Jordan
- College of Engineering, Yuan Ze University, Taoyuan, Taiwan
- Hourani Center for Applied Scientific Research, Al-Ahliyya Amman University, Amman 19328, Jordan
- MEU Research Unit, Middle East University, Amman 11831, Jordan
- Applied Science Research Center, Applied Science Private University, Amman 11931, Jordan
- School of Computer Sciences, Universiti Sains Malaysia, Pulau Pinang 11800, Malaysia
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Sasmal B, Hussien AG, Das A, Dhal KG. A Comprehensive Survey on Aquila Optimizer. ARCHIVES OF COMPUTATIONAL METHODS IN ENGINEERING : STATE OF THE ART REVIEWS 2023; 30:1-28. [PMID: 37359742 PMCID: PMC10245365 DOI: 10.1007/s11831-023-09945-6] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/12/2023] [Accepted: 05/17/2023] [Indexed: 06/28/2023]
Abstract
Aquila Optimizer (AO) is a well-known nature-inspired optimization algorithm (NIOA) that was created in 2021 based on the prey grabbing behavior of Aquila. AO is a population-based NIOA that has demonstrated its effectiveness in the field of complex and nonlinear optimization in a short period of time. As a result, the purpose of this study is to provide an updated survey on the topic. This survey accurately reports on the designed enhanced AO variations and their applications. In order to properly assess AO, a rigorous comparison between AO and its peer NIOAs is conducted over mathematical benchmark functions. The experimental results show the AO provides competitive outcomes.
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Affiliation(s)
- Buddhadev Sasmal
- Department of Computer Science and Application, Midnapore College (Autonomous), Paschim Medinipur, West Bengal India
| | - Abdelazim G. Hussien
- Department of Computer and Information Science, Linköping University, 58183 Linköping, Sweden
- Faculty of Science, Fayoum University, Fayoum, Egypt
- MEU Research Unit, Middle East University, Amman, Jordan
| | - Arunita Das
- Department of Computer Science and Application, Midnapore College (Autonomous), Paschim Medinipur, West Bengal India
| | - Krishna Gopal Dhal
- Department of Computer Science and Application, Midnapore College (Autonomous), Paschim Medinipur, West Bengal India
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Zafar A, Hussain SJ, Ali MU, Lee SW. Metaheuristic Optimization-Based Feature Selection for Imagery and Arithmetic Tasks: An fNIRS Study. SENSORS (BASEL, SWITZERLAND) 2023; 23:s23073714. [PMID: 37050774 PMCID: PMC10098559 DOI: 10.3390/s23073714] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/02/2023] [Revised: 03/23/2023] [Accepted: 03/30/2023] [Indexed: 06/01/2023]
Abstract
In recent decades, the brain-computer interface (BCI) has emerged as a leading area of research. The feature selection is vital to reduce the dataset's dimensionality, increase the computing effectiveness, and enhance the BCI's performance. Using activity-related features leads to a high classification rate among the desired tasks. This study presents a wrapper-based metaheuristic feature selection framework for BCI applications using functional near-infrared spectroscopy (fNIRS). Here, the temporal statistical features (i.e., the mean, slope, maximum, skewness, and kurtosis) were computed from all the available channels to form a training vector. Seven metaheuristic optimization algorithms were tested for their classification performance using a k-nearest neighbor-based cost function: particle swarm optimization, cuckoo search optimization, the firefly algorithm, the bat algorithm, flower pollination optimization, whale optimization, and grey wolf optimization (GWO). The presented approach was validated based on an available online dataset of motor imagery (MI) and mental arithmetic (MA) tasks from 29 healthy subjects. The results showed that the classification accuracy was significantly improved by utilizing the features selected from the metaheuristic optimization algorithms relative to those obtained from the full set of features. All of the abovementioned metaheuristic algorithms improved the classification accuracy and reduced the feature vector size. The GWO yielded the highest average classification rates (p < 0.01) of 94.83 ± 5.5%, 92.57 ± 6.9%, and 85.66 ± 7.3% for the MA, MI, and four-class (left- and right-hand MI, MA, and baseline) tasks, respectively. The presented framework may be helpful in the training phase for selecting the appropriate features for robust fNIRS-based BCI applications.
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Affiliation(s)
- Amad Zafar
- Department of Intelligent Mechatronics Engineering, Sejong University, Seoul 05006, Republic of Korea
| | - Shaik Javeed Hussain
- Department of Electrical and Electronics, Global College of Engineering and Technology, Muscat 112, Oman
| | - Muhammad Umair Ali
- Department of Intelligent Mechatronics Engineering, Sejong University, Seoul 05006, Republic of Korea
| | - Seung Won Lee
- Department of Precision Medicine, School of Medicine, Sungkyunkwan University, Suwon 16419, Republic of Korea
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Risk Evaluation of Bone Metastases and a Simple Tool for Detecting Bone Metastases in Prostate Cancer: A Population-Based Study. COMPUTATIONAL AND MATHEMATICAL METHODS IN MEDICINE 2023; 2023:9161763. [PMID: 36824150 PMCID: PMC9943600 DOI: 10.1155/2023/9161763] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/18/2022] [Revised: 01/15/2023] [Accepted: 01/28/2023] [Indexed: 02/18/2023]
Abstract
Introduction Population-based estimates of the incidence and prognosis of bone metastases in prostate cancer (PC) are lacking. We aimed to characterize the incidence and risk of bone metastases and develop a simple tool for the prediction of bone metastases among patients with PC. Methods Data were obtained from the Surveillance, Epidemiology, and End Results (SEER) database. A total of 75698 patients with PC with confirmed presence or absence of bone metastases at diagnosis between 1975 and 2019 in the United States were used for analysis. Data were stratified by age, race, residence, median income, prostate-specific antigen (PSA) values, tumor size, distant metastatic history, and positive lymph node scores. Multivariable logistic and Cox regressions were performed to identify predictors of bone metastases and factors correlated with all-cause mortality. Classification tree analysis was performed to establish a model. Results After patients with PC with missing data were excluded, 75698 cases remained. Among these, 3835 patients had bone metastases. Incidence proportions were highest in patients with a high prostate-specific antigen (PSA) value (odds ratio (OR), 2.49; 95% confidence interval (CI), 1.35-4.35; p < 0.002). Multivariable Cox regression and risk analyses indicated that high PSA values (hazards ratio (HR), 19.8; 95% CI, 18.5-21.2; p < 0.001) and high positive lymph node scores (vs. score 0; HR, 8.65; 95% CI, 7.89-9.49; p < 0.001) were significant risk factors for mortality. Meanwhile, in the predication tree analysis, PSA values and lymph node scores were the most significant determining factors in two models. Median survival among the patients with PC was 78 months, but only 31 months among those with bone metastases. Conclusion Patients with PC with high PSA values or high positive lymph node scores were at a significantly higher risk of bone metastases. Our study may provide a simple and accurate tool to identify patients with PC at high risk of bone metastases based on population-based estimates.
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Gharaibeh M, El-Obeid E, Khasawneh R, Karrar M, Salman M, Farah A, Ahmmed S, Al-Omari M, Elheis M, Abualigah L. Impact of the COVID-19 pandemic on imaging case volumes in King Abdullah University Hospitals (KAUH). Front Med (Lausanne) 2023; 10:1103083. [PMID: 36844230 PMCID: PMC9947495 DOI: 10.3389/fmed.2023.1103083] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2022] [Accepted: 01/23/2023] [Indexed: 02/11/2023] Open
Abstract
Objective COVID-19 has an increased burden on the delivery of services because the measures taken by the governments forced hospitals to cancel most of their elective procedures and led to the shutting down of outpatient clinics. This study aimed to evaluate the impact COVID-19 pandemic on the volume of radiology exams based on patient service locations and imaging modality in the North of Jordan. Methods The imaging case volumes that were performed at the King Abdullah University Hospital (KAUH), Jordan, from 1 January 2020 to 8 May 2020, were retrospectively collected and compared to those from 1 January 2019 to 28 May 2019, to determine the impact of the pandemic of COVID-19 on the volume of radiological examinations. The 2020 study period was chosen to cover the peak of COVID-19 cases and to record the effects on imaging case volumes. Results A total of 46,194 imaging case volumes were performed at our tertiary center in 2020 compared to 65,441 imaging cases in 2019. Overall, the imaging case volume in 2020 decreased by 29.4% relative to the same period in 2019. The imaging case volumes decreased for all imaging modalities relative to 2019. The number of nuclear images showed the highest decline (41.0%) in 2020, followed by the number of ultrasounds (33.2%). Interventional radiology was the least affected imaging modality by this decline, with about a 22.9% decline. Conclusion The number of imaging case volumes decreased significantly during the COVID-19 pandemic and its associated lockdown. The outpatient service location was the most affected by this decline. Effective strategies must be adopted to avoid the aforementioned effect on the healthcare system in future pandemics.
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Affiliation(s)
- Maha Gharaibeh
- Faculty of Medicine, Department of Diagnostic and Interventional Radiology, Jordan University of Science and Technology, Irbid, Jordan
| | - Eyhab El-Obeid
- Faculty of Medicine, Department of Diagnostic and Interventional Radiology, Jordan University of Science and Technology, Irbid, Jordan
- Faculty of Medicine, Department of Diagnostic Radiology, Omdurman Islamic University, Omdurman, Sudan
| | - Ruba Khasawneh
- Faculty of Medicine, Department of Diagnostic and Interventional Radiology, Jordan University of Science and Technology, Irbid, Jordan
| | - Musaab Karrar
- Faculty of Medicine, Department of Emergency, Jordan University of Science and Technology, Irbid, Jordan
- Faculty of Medicine, Department of Emergency, Omdurman Islamic University, Omdurman, Sudan
| | - Mohamed Salman
- Faculty of Medicine, Department of Diagnostic and Interventional Radiology, Jordan University of Science and Technology, Irbid, Jordan
| | - Ahmad Farah
- Faculty of Medicine, Department of Diagnostic and Interventional Radiology, Jordan University of Science and Technology, Irbid, Jordan
| | - Sammah Ahmmed
- Faculty of Medicine, Department of Diagnostic and Interventional Radiology, Jordan University of Science and Technology, Irbid, Jordan
| | - Mamoon Al-Omari
- Faculty of Medicine, Department of Diagnostic and Interventional Radiology, Jordan University of Science and Technology, Irbid, Jordan
| | - Mwaffaq Elheis
- Faculty of Medicine, Department of Diagnostic and Interventional Radiology, Jordan University of Science and Technology, Irbid, Jordan
| | - Laith Abualigah
- Prince Hussein Bin Abdullah Faculty for Information Technology, Computer Science Department, Al al-Bayt University, Mafraq, Jordan
- Hourani Center for Applied Scientific Research, Al-Ahliyya Amman University, Amman, Jordan
- Faculty of Information Technology, Middle East University, Amman, Jordan
- Applied Science Research Center, Applied Science Private University, Amman, Jordan
- School of Computer Sciences, Universiti Sains Malaysia, Penang, Malaysia
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Navin K, Nehemiah HK, Nancy Jane Y, Veena Saroji H. A classification framework using filter–wrapper based feature selection approach for the diagnosis of congenital heart failure. JOURNAL OF INTELLIGENT & FUZZY SYSTEMS 2023. [DOI: 10.3233/jifs-221348] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Abstract
Premature mortality from cardiovascular disease can be reduced with early detection of heart failure by analysing the patients’ risk factors and assuring accurate diagnosis. This work proposes a clinical decision support system for the diagnosis of congenital heart failure by utilizing a data pre-processing approach for dealing missing values and a filter-wrapper based method for selecting the most relevant features. Missing values are imputed using a missForest method in four out of eight heart disease datasets collected from the Machine Learning Repository maintained by University of California, Irvine. The Fast Correlation Based Filter is used as the filter approach, while the union of the Atom Search Optimization Algorithm and the Henry Gas Solubility Optimization represent the wrapper-based algorithms, with the fitness function as the combination of accuracy, G-mean, and Matthew’s correlation coefficient measured by the Support Vector Machine. A total of four boosted classifiers namely, XGBoost, AdaBoost, CatBoost, and LightGBM are trained using the selected features. The proposed work achieves an accuracy of 89%, 84%, 83%, 80% for Heart Failure Clinical Records, 81%, 80%, 83%, 82% for Single Proton Emission Computed Tomography, 90%, 82%, 93%, 80% for Single Proton Emission Computed Tomography F, 80%, 80%, 81%, 80% for Statlog Heart Disease, 80%, 85%, 83%, 86% for Cleveland Heart Disease, 82%, 85%, 85%, 82% for Hungarian Heart Disease, 80%, 81%, 79%, 82% for VA Long Beach, 97%, 89%, 98%, 97%, for Switzerland Heart Disease for four classifiers respectively. The suggested technique outperformed the other classifiers when evaluated against Random Forest, Classification and Regression Trees, Support Vector Machine, and K-Nearest Neighbor.
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Affiliation(s)
- K.S. Navin
- Ramanujan Computing Centre, Anna University, Chennai, India
| | | | - Y. Nancy Jane
- Department of Computer Technology, Madras Institute of Technology, Chennai, India
| | - H. Veena Saroji
- Assistant Director Planning, Directorate of Health Services, Kerala, India
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Mahdi AY, Yuhaniz SS. Optimal feature selection using novel flamingo search algorithm for classification of COVID-19 patients from clinical text. MATHEMATICAL BIOSCIENCES AND ENGINEERING : MBE 2023; 20:5268-5297. [PMID: 36896545 DOI: 10.3934/mbe.2023244] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/18/2023]
Abstract
Though several AI-based models have been established for COVID-19 diagnosis, the machine-based diagnostic gap is still ongoing, making further efforts to combat this epidemic imperative. So, we tried to create a new feature selection (FS) method because of the persistent need for a reliable system to choose features and to develop a model to predict the COVID-19 virus from clinical texts. This study employs a newly developed methodology inspired by the flamingo's behavior to find a near-ideal feature subset for accurate diagnosis of COVID-19 patients. The best features are selected using a two-stage. In the first stage, we implemented a term weighting technique, which that is RTF-C-IEF, to quantify the significance of the features extracted. The second stage involves using a newly developed feature selection approach called the improved binary flamingo search algorithm (IBFSA), which chooses the most important and relevant features for COVID-19 patients. The proposed multi-strategy improvement process is at the heart of this study to improve the search algorithm. The primary objective is to broaden the algorithm's capabilities by increasing diversity and support exploring the algorithm search space. Additionally, a binary mechanism was used to improve the performance of traditional FSA to make it appropriate for binary FS issues. Two datasets, totaling 3053 and 1446 cases, were used to evaluate the suggested model based on the Support Vector Machine (SVM) and other classifiers. The results showed that IBFSA has the best performance compared to numerous previous swarm algorithms. It was noted, that the number of feature subsets that were chosen was also drastically reduced by 88% and obtained the best global optimal features.
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Affiliation(s)
- Amir Yasseen Mahdi
- Razak Faculty of Technology and Informatics, Universiti Teknologi Malaysia, Kuala Lumpur 54100, Malaysia
- Computer sciences and mathematics college, University of Thi_Qar, Thi_Qar, 64000, Iraq
| | - Siti Sophiayati Yuhaniz
- Razak Faculty of Technology and Informatics, Universiti Teknologi Malaysia, Kuala Lumpur 54100, Malaysia
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Nadimi-Shahraki MH, Taghian S, Zamani H, Mirjalili S, Elaziz MA. MMKE: Multi-trial vector-based monkey king evolution algorithm and its applications for engineering optimization problems. PLoS One 2023; 18:e0280006. [PMID: 36595557 PMCID: PMC9810208 DOI: 10.1371/journal.pone.0280006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2022] [Accepted: 12/19/2022] [Indexed: 01/04/2023] Open
Abstract
Monkey king evolution (MKE) is a population-based differential evolutionary algorithm in which the single evolution strategy and the control parameter affect the convergence and the balance between exploration and exploitation. Since evolution strategies have a considerable impact on the performance of algorithms, collaborating multiple strategies can significantly enhance the abilities of algorithms. This is our motivation to propose a multi-trial vector-based monkey king evolution algorithm named MMKE. It introduces novel best-history trial vector producer (BTVP) and random trial vector producer (RTVP) that can effectively collaborate with canonical MKE (MKE-TVP) using a multi-trial vector approach to tackle various real-world optimization problems with diverse challenges. It is expected that the proposed MMKE can improve the global search capability, strike a balance between exploration and exploitation, and prevent the original MKE algorithm from converging prematurely during the optimization process. The performance of the MMKE was assessed using CEC 2018 test functions, and the results were compared with eight metaheuristic algorithms. As a result of the experiments, it is demonstrated that the MMKE algorithm is capable of producing competitive and superior results in terms of accuracy and convergence rate in comparison to comparative algorithms. Additionally, the Friedman test was used to examine the gained experimental results statistically, proving that MMKE is significantly superior to comparative algorithms. Furthermore, four real-world engineering design problems and the optimal power flow (OPF) problem for the IEEE 30-bus system are optimized to demonstrate MMKE's real applicability. The results showed that MMKE can effectively handle the difficulties associated with engineering problems and is able to solve single and multi-objective OPF problems with better solutions than comparative algorithms.
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Affiliation(s)
- Mohammad H. Nadimi-Shahraki
- Faculty of Computer Engineering, Najafabad Branch, Islamic Azad University, Najafabad, Iran
- Big Data Research Center, Najafabad Branch, Islamic Azad University, Najafabad, Iran
- Centre for Artificial Intelligence Research and Optimisation, Torrens University Australia, Adelaide, Australia
- * E-mail: ,
| | - Shokooh Taghian
- Faculty of Computer Engineering, Najafabad Branch, Islamic Azad University, Najafabad, Iran
- Big Data Research Center, Najafabad Branch, Islamic Azad University, Najafabad, Iran
| | - Hoda Zamani
- Faculty of Computer Engineering, Najafabad Branch, Islamic Azad University, Najafabad, Iran
- Big Data Research Center, Najafabad Branch, Islamic Azad University, Najafabad, Iran
| | - Seyedali Mirjalili
- Centre for Artificial Intelligence Research and Optimisation, Torrens University Australia, Adelaide, Australia
- Yonsei Frontier Lab, Yonsei University, Seoul, South Korea
| | - Mohamed Abd Elaziz
- Department of Mathematics, Faculty of Science, Zagazig University, Zagazig, Egypt
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Pan JS, Hu P, Snášel V, Chu SC. A survey on binary metaheuristic algorithms and their engineering applications. Artif Intell Rev 2022; 56:6101-6167. [PMID: 36466763 PMCID: PMC9684803 DOI: 10.1007/s10462-022-10328-9] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
This article presents a comprehensively state-of-the-art investigation of the engineering applications utilized by binary metaheuristic algorithms. Surveyed work is categorized based on application scenarios and solution encoding, and describes these algorithms in detail to help researchers choose appropriate methods to solve related applications. It is seen that transfer function is the main binary coding of metaheuristic algorithms, which usually adopts Sigmoid function. Among the contributions presented, there were different implementations and applications of metaheuristic algorithms, or the study of engineering applications by different objective functions such as the single- and multi-objective problems of feature selection, scheduling, layout and engineering structure optimization. The article identifies current troubles and challenges by the conducted review, and discusses that novel binary algorithm, transfer function, benchmark function, time-consuming problem and application integration are need to be resolved in future.
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Affiliation(s)
- Jeng-Shyang Pan
- College of Computer Science and Engineering, Shandong University of Science and Technology, Qingdao, 266590 Shandong China
- Department of Information Management, Chaoyang University of Technology, Taichung, 413310 Taiwan
| | - Pei Hu
- Department of Information Management, Chaoyang University of Technology, Taichung, 413310 Taiwan
- School of Computer Science and Software Engineering, Nanyang Institute of Technology, Nanyang, 473004 Henan China
| | - Václav Snášel
- Faculty of Electrical Engineering and Computer Science, VŠB—Technical University of Ostrava, Ostrava, 70032 Moravskoslezský kraj Czech Republic
| | - Shu-Chuan Chu
- College of Computer Science and Engineering, Shandong University of Science and Technology, Qingdao, 266590 Shandong China
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Chattopadhyay S, Dey A, Singh PK, Oliva D, Cuevas E, Sarkar R. MTRRE-Net: A deep learning model for detection of breast cancer from histopathological images. Comput Biol Med 2022; 150:106155. [PMID: 36240595 DOI: 10.1016/j.compbiomed.2022.106155] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2022] [Revised: 08/31/2022] [Accepted: 09/24/2022] [Indexed: 11/03/2022]
Abstract
Histopathological image classification has become one of the most challenging tasks among researchers due to the fine-grained variability of the disease. However, the rapid development of deep learning-based models such as the Convolutional Neural Network (CNN) has propelled much attentiveness to the classification of complex biomedical images. In this work, we propose a novel end-to-end deep learning model, named Multi-scale Dual Residual Recurrent Network (MTRRE-Net), for breast cancer classification from histopathological images. This model introduces a contrasting approach of dual residual block combined with the recurrent network to overcome the vanishing gradient problem even if the network is significantly deep. The proposed model has been evaluated on a publicly available standard dataset, namely BreaKHis, and achieved impressive accuracy in overcoming state-of-the-art models on all the images considered at various magnification levels.
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Affiliation(s)
- Soham Chattopadhyay
- Department of Electrical Engineering, Jadavpur University, 188, Raja S.C. Mallick Road, Kolkata 700032, West Bengal, India.
| | - Arijit Dey
- Department of Computer Science and Engineering, Maulana Abul Kalam Azad University of Technology, Kolkata 700064, West Bengal, India.
| | - Pawan Kumar Singh
- Department of Information Technology, Jadavpur University, Jadavpur University Second Campus, Plot No. 8, Salt Lake Bypass, LB Block, Sector III, Salt Lake City, Kolkata 700106, West Bengal, India.
| | - Diego Oliva
- División de Tecnologías para la Integración Ciber-Humana, Universidad de Guadalajara, CUCEI, Av. Revolución 1500, 44430, Guadalajara, Jal, Mexico.
| | - Erik Cuevas
- División de Tecnologías para la Integración Ciber-Humana, Universidad de Guadalajara, CUCEI, Av. Revolución 1500, 44430, Guadalajara, Jal, Mexico.
| | - Ram Sarkar
- Department of Computer Science and Engineering, Jadavpur University, 188, Raja S.C. Mallick Road, Kolkata 700032, West Bengal, India.
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Alzu'bi D, Abdullah M, Hmeidi I, AlAzab R, Gharaibeh M, El-Heis M, Almotairi KH, Forestiero A, Hussein AM, Abualigah L. Kidney Tumor Detection and Classification Based on Deep Learning Approaches: A New Dataset in CT Scans. JOURNAL OF HEALTHCARE ENGINEERING 2022; 2022:3861161. [PMID: 37323471 PMCID: PMC10266909 DOI: 10.1155/2022/3861161] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/17/2022] [Accepted: 09/15/2022] [Indexed: 09/01/2023]
Abstract
Kidney tumor (KT) is one of the diseases that have affected our society and is the seventh most common tumor in both men and women worldwide. The early detection of KT has significant benefits in reducing death rates, producing preventive measures that reduce effects, and overcoming the tumor. Compared to the tedious and time-consuming traditional diagnosis, automatic detection algorithms of deep learning (DL) can save diagnosis time, improve test accuracy, reduce costs, and reduce the radiologist's workload. In this paper, we present detection models for diagnosing the presence of KTs in computed tomography (CT) scans. Toward detecting and classifying KT, we proposed 2D-CNN models; three models are concerning KT detection such as a 2D convolutional neural network with six layers (CNN-6), a ResNet50 with 50 layers, and a VGG16 with 16 layers. The last model is for KT classification as a 2D convolutional neural network with four layers (CNN-4). In addition, a novel dataset from the King Abdullah University Hospital (KAUH) has been collected that consists of 8,400 images of 120 adult patients who have performed CT scans for suspected kidney masses. The dataset was divided into 80% for the training set and 20% for the testing set. The accuracy results for the detection models of 2D CNN-6 and ResNet50 reached 97%, 96%, and 60%, respectively. At the same time, the accuracy results for the classification model of the 2D CNN-4 reached 92%. Our novel models achieved promising results; they enhance the diagnosis of patient conditions with high accuracy, reducing radiologist's workload and providing them with a tool that can automatically assess the condition of the kidneys, reducing the risk of misdiagnosis. Furthermore, increasing the quality of healthcare service and early detection can change the disease's track and preserve the patient's life.
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Affiliation(s)
- Dalia Alzu'bi
- Department of Computer Information Systems, Jordan University of Science and Technology, Irbid 2210, Jordan
| | - Malak Abdullah
- Department of Computer Information Systems, Jordan University of Science and Technology, Irbid 2210, Jordan
| | - Ismail Hmeidi
- Department of Computer Information Systems, Jordan University of Science and Technology, Irbid 2210, Jordan
| | - Rami AlAzab
- Department of General Surgery and Urology, University of Science and Technology, Irbid 22110, Jordan
| | - Maha Gharaibeh
- Department of Diagnostic and Interventional Radiology, Faculty of Medicine, Jordan University of Science and Technology, Irbid 2210, Jordan
| | - Mwaffaq El-Heis
- Department of Diagnostic and Interventional Radiology, Faculty of Medicine, Jordan University of Science and Technology, Irbid 2210, Jordan
| | - Khaled H. Almotairi
- Computer Engineering Department, Computer and Information Systems College, Umm Al-Qura University, Makkah 21955, Saudi Arabia
| | - Agostino Forestiero
- Institute for High Performance Computing and Networking, CNR, Rende (CS), Italy
| | - Ahmad MohdAziz Hussein
- Deanship of E-Learning and Distance Education, Umm Al-Qura University, Makkah 21955, Saudi Arabia
| | - Laith Abualigah
- Hourani Center for Applied Scientific Research, Al-Ahliyya Amman University, Amman 19328, Jordan
- Faculty of Information Technology, Middle East University, Amman 11831, Jordan
- School of Computer Sciences, Universiti Sains Malaysia, Pulau Pinang 11800, Malaysia
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