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Baizer L, Bures R, Nadkarni G, Reyes-Guzman C, Ladwa S, Cade B, Westover MB, Durmer J, de Zambotti M, Desai M, Parekh A, Si B, Fernandez-Mendoza J, Minor K, Mazzotti DR, Lee S, Katabi D, Kiss O, Spira AP, Morris J, Seixas A, Kioumourtzoglou MA, Bridges JFP, Brown M, Hale L, Purcell S. Big data approaches for novel mechanistic insights on sleep and circadian rhythms: a workshop summary. Sleep 2025; 48:zsaf035. [PMID: 39945146 PMCID: PMC12163129 DOI: 10.1093/sleep/zsaf035] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2024] [Revised: 02/01/2025] [Indexed: 02/19/2025] Open
Abstract
The National Center on Sleep Disorders Research of the National Heart, Lung, and Blood Institute at the National Institutes of Health hosted a 2-day virtual workshop titled Big Data Approaches for Novel Mechanistic Insights on Disorders of Sleep and Circadian Rhythms on May 2nd and 3rd, 2024. The goals of this workshop were to establish a comprehensive understanding of the current state of sleep and circadian rhythm disorders research to identify opportunities to advance the field by using approaches based on artificial intelligence and machine learning. The workshop showcased rapidly developing technologies for sensitive and comprehensive remote analysis of sleep and its disorders that can account for physiological, environmental, and social influences, potentially leading to novel insights on long-term health consequences of sleep disorders and disparities of these health problems in specific populations.
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Affiliation(s)
- Lawrence Baizer
- National Center on Sleep Disorders Research, National Heart, Lung and Blood Institute, National Institutes of Health, Bethesda, MD, USA
| | - Regina Bures
- National Heart, Lung and Blood Institute, National Institutes of Health, Bethesda, MD, USA
| | - Girish Nadkarni
- The Charles Bronfman Institute of Personalized Medicine, Icahn School of Medicine at Mount Sinai, New York, NY, USA
| | | | - Sweta Ladwa
- National Heart, Lung and Blood Institute, National Institutes of Health, Bethesda, MD, USA
| | - Brian Cade
- Brigham and Women’s Hospital, Harvard Medical School, Boston, MA, USA
| | | | - Jeffrey Durmer
- Sleep & Circadian Science, Absolute Rest, Denver, CO, USA
| | | | - Manisha Desai
- Quantitative Sciences Unit, Stanford University Medical School, Stanford, CA, USA
| | - Ankit Parekh
- Division of Pulmonary, Critical Care and Sleep Medicine, Department of Medicine, Icahn School of Medicine at Mount Sinai New York, NY, USA
| | - Bing Si
- School of Computing and Augmented Intelligence, Arizona State University, Tempe, AZ, USA
| | - Julio Fernandez-Mendoza
- Penn State College of Medicine Sleep Research and Treatment Center, Pennsylvania State University College of Medicine, Hershey, PA, USA
| | - Kelton Minor
- Department of Environmental Health Sciences, Columbia University Mailman School of Public Health, New York, NY, USA
| | - Diego R Mazzotti
- Division of Medical Informatics, University of Kansas Medical Center, Kansas City, KS, USA
| | - Soomi Lee
- Department of Human Development and Family Studies, Center for Healthy Aging, Pennsylvania State University, University Park, PA, USA
| | - Dina Katabi
- MIT Center for Wireless Networks and Mobile Computing, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Orsolya Kiss
- Center for Health Sciences, SRI International, Menlo Park, CA, USA
| | - Adam P Spira
- Department of Mental Health, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, USA
| | - Jonna Morris
- School of Nursing, University of Pittsburgh, Pittsburgh, PA, USA
| | - Azizi Seixas
- Department of Psychiatry and Behavioral Sciences, University of Miami, Miami, FL, USA
| | | | | | - Marishka Brown
- National Center on Sleep Disorders Research, National Heart, Lung and Blood Institute, National Institutes of Health, Bethesda, MD, USA
| | - Lauren Hale
- Renaissance School of Medicine, Stony Brook University, Stony Brook, NY, USA
| | - Shaun Purcell
- Brigham and Women’s Hospital, Harvard Medical School, Boston, MA, USA
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Bilal E, Araujo MLD, Beck KL, Heinzinger CM, Ghosn S, Saab CY, Schaefer NF, Rogers JL, Mehra R. A Foundation Model for Sleep-Based Risk Stratification and Clinical Outcomes. RESEARCH SQUARE 2025:rs.3.rs-6307069. [PMID: 40297683 PMCID: PMC12036469 DOI: 10.21203/rs.3.rs-6307069/v1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/30/2025]
Abstract
Clinical diagnosis of sleep disorders, which are recognized contributors to morbidity and mortality, often relies on polysomnography (PSG) data. However, the vast physiologic data collected during PSG is underutilized, presenting a key opportunity to enhance characterization of sleep dysfunction and predict clinical outcomes. We introduce a sleep foundation model that uniquely integrates PSG time-series signals and electronic medical record data. Using a diverse dataset (n=10,000; mean observation period 14.5±7.1 years), our transformer-based model generates data-driven representations of latent physiological patterns. When clustered, we identified subpopulations with differential health trajectories. The highest risk-group exhibited strong correlations with all-cause mortality (unadjusted hazard ratio [HR] 4.83, 95% confidence interval [CI] 3.60-6.50, p<0.001) as well as cardiovascular outcomes and neurological outcomes, even after accounting for traditional measures. External validation in a National Sleep Research Resource cohort confirmed findings. We created a novel, clinically applicable framework leveraging information-dense PSG data to inform risk stratification and predict health outcomes beyond traditional methods.
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Affiliation(s)
- Erhan Bilal
- Digital Health, IBM Research, T.J. Watson Research Center, Yorktown Heights, USA
| | | | - Kristen L Beck
- Digital Health, IBM Research, IBM Research Almaden Lab, San Jose, USA
| | - Catherine M Heinzinger
- Sleep Disorders Center, Neurological Institute Cleveland Clinic Foundation, Cleveland, USA
| | - Samer Ghosn
- Department of Biomedical Engineering, Cleveland Clinic Foundation, Cleveland, USA
| | - Carl Y Saab
- Department of Biomedical Engineering, Cleveland Clinic Foundation, Cleveland, USA
- School of Medicine, Case Western Reserve University, Cleveland, USA
- Department of Engineering, Brown University, Providence, USA
| | - Nancy Foldvary Schaefer
- Sleep Disorders & Epilepsy Centers, Neurological Institute Cleveland Clinic Foundation, Cleveland, USA
| | - Jeffrey L Rogers
- Digital Health, IBM Research, T.J. Watson Research Center, Yorktown Heights, USA
| | - Reena Mehra
- Division of Pulmonary, Critical Care, and Sleep Medicine, University of Washington, Seattle, USA
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Shafer BM, West CR, Foster GE. Advancements in the neurocirculatory reflex response to hypoxia. Am J Physiol Regul Integr Comp Physiol 2024; 327:R1-R13. [PMID: 38738293 PMCID: PMC11380992 DOI: 10.1152/ajpregu.00237.2023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2023] [Revised: 04/16/2024] [Accepted: 04/29/2024] [Indexed: 05/14/2024]
Abstract
Hypoxia is a pivotal factor in the pathophysiology of various clinical conditions, including obstructive sleep apnea, which has a strong association with cardiovascular diseases like hypertension, posing significant health risks. Although the precise mechanisms linking hypoxemia-associated clinical conditions with hypertension remains incompletely understood, compelling evidence suggests that hypoxia induces plasticity of the neurocirculatory control system. Despite variations in experimental designs and the severity, frequency, and duration of hypoxia exposure, evidence from animal and human models consistently demonstrates the robust effects of hypoxemia in triggering reflex-mediated sympathetic activation. Both acute and chronic hypoxia alters neurocirculatory regulation and, in some circumstances, leads to sympathetic outflow and elevated blood pressures that persist beyond the hypoxic stimulus. Dysregulation of autonomic control could lead to adverse cardiovascular outcomes and increase the risk of developing hypertension.
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Affiliation(s)
- Brooke M Shafer
- Centre for Heart, Lung, and Vascular Health, School of Health and Exercise Sciences, University of British Columbia, Kelowna, British Columbia, Canada
| | - Christopher R West
- International Collaboration on Repair Discoveries, University of British Columbia, Vancouver, British Columbia, Canada
- Centre for Chronic Disease Prevention and Management, University of British Columbia, Kelowna, British Columbia, Canada
- Department of Cellular and Physiological Sciences, Faculty of Medicine, University of British Columbia, Vancouver, British Columbia, Canada
| | - Glen E Foster
- Centre for Heart, Lung, and Vascular Health, School of Health and Exercise Sciences, University of British Columbia, Kelowna, British Columbia, Canada
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Doña E, Reinoso-Arija R, Carrasco-Hernandez L, Doménech A, Dorado A, Lopez-Campos JL. Exploring Current Concepts and Challenges in the Identification and Management of Early-Stage COPD. J Clin Med 2023; 12:5293. [PMID: 37629335 PMCID: PMC10455125 DOI: 10.3390/jcm12165293] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2023] [Revised: 08/06/2023] [Accepted: 08/11/2023] [Indexed: 08/27/2023] Open
Abstract
The need to improve health outcomes, as well as disease prognosis, has led clinicians and researchers to propose new ways of identifying COPD in its earliest forms. This initiative is based on the hypothesis that an earlier intervention would have a greater prognostic impact. However, the operational definition of a patient in the initial stages of the disease is complex, and there is still no unanimously accepted definition. GOLD has recently proposed different concepts to identify COPD in its early stages, such as COPD in young people or COPD with mild functional impairment. In addition, GOLD proposes two other concepts, called pre-COPD (symptomatic non-obstructive patients) and PRISm (preserved ratio with impaired spirometry), which aim to identify the patient at risk of developing this chronic airflow obstruction. However, despite the attractiveness of these concepts, none have been taken up universally by the medical community. A universally accepted identification of how to define COPD in its early stages is necessary as a preliminary step in order to design clinical trials to find out the best way to treat these patients. This review deals with these concepts of COPD at the onset of the disease, highlighting their importance and the problems involved in identifying them as therapeutic targets in real clinical practice.
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Affiliation(s)
- Esperanza Doña
- Unidad Médico-Quirúrgico de Enfermedades Respiratorias, Hospital Regional Universitario de Málaga, 29010 Málaga, Spain; (E.D.); (A.D.); (A.D.)
| | - Rocío Reinoso-Arija
- Unidad Médico-Quirúrgica de Enfermedades Respiratorias, Instituto de Biomedicina de Sevilla, IBiS, Hospital Universitario Virgen del Rocío, CSIC, Universidad de Sevilla, 41013 Sevilla, Spain; (R.R.-A.); (L.C.-H.)
| | - Laura Carrasco-Hernandez
- Unidad Médico-Quirúrgica de Enfermedades Respiratorias, Instituto de Biomedicina de Sevilla, IBiS, Hospital Universitario Virgen del Rocío, CSIC, Universidad de Sevilla, 41013 Sevilla, Spain; (R.R.-A.); (L.C.-H.)
- Centro de Investigación Biomédica en Red de Enfermedades Respiratorias (CIBERES), Instituto de Salud Carlos III, 28029 Madrid, Spain
| | - Adolfo Doménech
- Unidad Médico-Quirúrgico de Enfermedades Respiratorias, Hospital Regional Universitario de Málaga, 29010 Málaga, Spain; (E.D.); (A.D.); (A.D.)
| | - Antonio Dorado
- Unidad Médico-Quirúrgico de Enfermedades Respiratorias, Hospital Regional Universitario de Málaga, 29010 Málaga, Spain; (E.D.); (A.D.); (A.D.)
| | - José Luis Lopez-Campos
- Unidad Médico-Quirúrgica de Enfermedades Respiratorias, Instituto de Biomedicina de Sevilla, IBiS, Hospital Universitario Virgen del Rocío, CSIC, Universidad de Sevilla, 41013 Sevilla, Spain; (R.R.-A.); (L.C.-H.)
- Centro de Investigación Biomédica en Red de Enfermedades Respiratorias (CIBERES), Instituto de Salud Carlos III, 28029 Madrid, Spain
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