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Li H, Akella S, Engstler C, Omini JJ, Rodriguez M, Obata T, Carrie C, Cerutti H, Mower JP. Recurrent evolutionary switches of mitochondrial cytochrome c maturation systems in Archaeplastida. Nat Commun 2024; 15:1548. [PMID: 38378784 PMCID: PMC10879542 DOI: 10.1038/s41467-024-45813-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2023] [Accepted: 02/05/2024] [Indexed: 02/22/2024] Open
Abstract
Mitochondrial cytochrome c maturation (CCM) requires heme attachment via distinct pathways termed systems I and III. The mosaic distribution of these systems in Archaeplastida raises questions about the genetic mechanisms and evolutionary forces promoting repeated evolution. Here, we show a recurrent shift from ancestral system I to the eukaryotic-specific holocytochrome c synthase (HCCS) of system III in 11 archaeplastid lineages. Archaeplastid HCCS is sufficient to rescue mutants of yeast system III and Arabidopsis system I. Algal HCCS mutants exhibit impaired growth and respiration, and altered biochemical and metabolic profiles, likely resulting from deficient CCM and reduced cytochrome c-dependent respiratory activity. Our findings demonstrate that archaeplastid HCCS homologs function as system III components in the absence of system I. These results elucidate the evolutionary trajectory and functional divergence of CCM pathways in Archaeplastida, providing insight into the causes, mechanisms, and consequences of repeated cooption of an entire biological pathway.
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Affiliation(s)
- Huang Li
- Center for Plant Science Innovation, University of Nebraska-Lincoln, Lincoln, NE, 68588, USA
| | - Soujanya Akella
- Center for Plant Science Innovation, University of Nebraska-Lincoln, Lincoln, NE, 68588, USA
- School of Biological Sciences, University of Nebraska-Lincoln, Lincoln, NE, 68588, USA
| | - Carina Engstler
- Department Biologie I-Botanik, Ludwig-Maximilians-Universität München, D-82152, Planegg-Martinsried, Germany
| | - Joy J Omini
- Department of Biochemistry, University of Nebraska-Lincoln, Lincoln, NE, 68588, USA
| | - Moira Rodriguez
- School of Biological Sciences, University of Nebraska-Lincoln, Lincoln, NE, 68588, USA
| | - Toshihiro Obata
- Center for Plant Science Innovation, University of Nebraska-Lincoln, Lincoln, NE, 68588, USA
- Department of Biochemistry, University of Nebraska-Lincoln, Lincoln, NE, 68588, USA
| | - Chris Carrie
- School of Biological Sciences, University of Auckland, Auckland, 1142, New Zealand
| | - Heriberto Cerutti
- Center for Plant Science Innovation, University of Nebraska-Lincoln, Lincoln, NE, 68588, USA
- School of Biological Sciences, University of Nebraska-Lincoln, Lincoln, NE, 68588, USA
| | - Jeffrey P Mower
- Center for Plant Science Innovation, University of Nebraska-Lincoln, Lincoln, NE, 68588, USA.
- Department of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, NE, 68583, USA.
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Wheeler GL, Sturm D, Langer G. Gephyrocapsa huxleyi (Emiliania huxleyi) as a model system for coccolithophore biology. JOURNAL OF PHYCOLOGY 2023; 59:1123-1129. [PMID: 37983837 DOI: 10.1111/jpy.13404] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/09/2023] [Accepted: 10/10/2023] [Indexed: 11/22/2023]
Abstract
Coccolithophores are the most abundant calcifying organisms in modern oceans and are important primary producers in many marine ecosystems. Their ability to generate a cellular covering of calcium carbonate plates (coccoliths) plays a major role in marine biogeochemistry and the global carbon cycle. Coccolithophores also play an important role in sulfur cycling through the production of the climate-active gas dimethyl sulfide. The primary model organism for coccolithophore research is Emiliania huxleyi, now named Gephyrocapsa huxleyi. G. huxleyi has a cosmopolitan distribution, occupying coastal and oceanic environments across the globe, and is the most abundant coccolithophore in modern oceans. Research in G. huxleyi has identified many aspects of coccolithophore biology, from cell biology to ecological interactions. In this perspective, we summarize the key advances made using G. huxleyi and examine the emerging tools for research in this model organism. We discuss the key steps that need to be taken by the research community to advance G. huxleyi as a model organism and the suitability of other species as models for specific aspects of coccolithophore biology.
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Affiliation(s)
- Glen L Wheeler
- The Marine Biological Association of the United Kingdom, The Laboratory, Plymouth, UK
| | - Daniela Sturm
- The Marine Biological Association of the United Kingdom, The Laboratory, Plymouth, UK
- School of Ocean and Earth Science, University of Southampton, Southampton, UK
| | - Gerald Langer
- Institute of Environmental Science and Technology (ICTA-UAB), Universitat Autònoma de Barcelona, Barcelona, Spain
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3
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Wang P, Liang X, Fang H, Wang J, Liu X, Li Y, Shi K. Transcriptomic and genetic approaches reveal that the pipecolate biosynthesis pathway simultaneously regulates tomato fruit ripening and quality. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2023; 201:107920. [PMID: 37527607 DOI: 10.1016/j.plaphy.2023.107920] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/18/2023] [Revised: 07/23/2023] [Accepted: 07/26/2023] [Indexed: 08/03/2023]
Abstract
Pipecolic acid (Pip) and N-hydroxypipecolic acid (NHP) have been found to accumulate during the ripening of multiple types of fruits; however, the function and mechanism of pipecolate pathway in fruits remain unclear. Here study was conducted on fruits produced by the model plant tomato, wherein the NHP biosynthesis-related genes, Slald1 and Slfmo1, were mutated. The results showed that the fruits of both the Slald1 and the Slfmo1 mutants exhibited a delayed onset of ripening, decreased fruit size, nutrition and flavor. Exogenous treatment with Pip and NHP promoted fruit ripening and improved fruit quality. Transcriptomic analysis combined with weighted gene co-expression network analysis revealed that the genes involved in the biosynthesis of amino acids, carbon metabolism, photosynthesis, starch and sucrose metabolism, flavonoid biosynthesis, and plant hormone signal transduction were affected by SlFMO1 gene mutation. Transcription factor prediction analysis revealed that the NAC and AP2/ERF-ERF family members are notably involved in the regulation pathway. Overall, our results suggest that the pipecolate biosynthesis pathway is involved in the simultaneous regulation of fruit ripening and quality and indicate that a regulatory mechanism at the transcriptional level exists. However, possible roles of endogenously synthesized Pip and NHP in these processes remain to be determined. The biosynthesis pathway genes SlALD1 and SlFMO1 may be potential breeding targets for promoting fruit ripening and improving fruit quality with concomitant yield increases.
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Affiliation(s)
- Ping Wang
- Hainan Institute, Zhejiang University, Yazhou Bay Science and Technology City, Sanya, 572025, China; Department of Horticulture, Zhejiang University, Hangzhou, China
| | - Xiao Liang
- Department of Horticulture, Zhejiang University, Hangzhou, China
| | - Hanmo Fang
- Department of Horticulture, Zhejiang University, Hangzhou, China
| | - Jiao Wang
- Department of Horticulture, Zhejiang University, Hangzhou, China
| | - Xiaotian Liu
- Department of Horticulture, Zhejiang University, Hangzhou, China
| | - Yimei Li
- Department of Horticulture, Zhejiang University, Hangzhou, China
| | - Kai Shi
- Hainan Institute, Zhejiang University, Yazhou Bay Science and Technology City, Sanya, 572025, China; Department of Horticulture, Zhejiang University, Hangzhou, China.
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4
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Diversity of Cellulolytic Microorganisms Associated with the Subterranean Termite Reticulitermes grassei. J Fungi (Basel) 2023; 9:jof9030294. [PMID: 36983462 PMCID: PMC10051133 DOI: 10.3390/jof9030294] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2022] [Revised: 02/10/2023] [Accepted: 02/23/2023] [Indexed: 02/26/2023] Open
Abstract
Reticulitermes grassei is a subterranean termite species that forages on woody structures of the Iberian Peninsula, and is often a building and crops pest. A total of 23 microorganisms associated with the activity of R. grassei were isolated from colonized ecosystems in southern Spain. They were morphologically and molecularly characterized, with fungi being the most prevalent ones. The fungi showed high values of optimum growth temperature, suggesting that they could be able to survive and develop in warm regions. Their cellulolytic activity was tested in carboxymethylcellulose (CMC) agar, concluding that all fungal isolates produce cellulases, and the enzymatic index (EI) was revealed in CMC agar with Gram’s iodine solution, with Penicillium citrinum showing the highest EI and Trichoderma longibrachiatum the highest mycelial growth rate on CMC. A preliminary microorganism dispersion assay was carried out with the termites, concluding that these insects may have a positive influence on fungal dispersion and the subsequent colonization of new substrates. Our study suggests that fungi associated with R. grassei may potentially be of interest in biotechnological fields such as biofuel production and the food industry.
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5
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Barak-Gavish N, Dassa B, Kuhlisch C, Nussbaum I, Brandis A, Rosenberg G, Avraham R, Vardi A. Bacterial lifestyle switch in response to algal metabolites. eLife 2023; 12:e84400. [PMID: 36691727 PMCID: PMC9873259 DOI: 10.7554/elife.84400] [Citation(s) in RCA: 14] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2022] [Accepted: 01/05/2023] [Indexed: 01/19/2023] Open
Abstract
Unicellular algae, termed phytoplankton, greatly impact the marine environment by serving as the basis of marine food webs and by playing central roles in the biogeochemical cycling of elements. The interactions between phytoplankton and heterotrophic bacteria affect the fitness of both partners. It is becoming increasingly recognized that metabolic exchange determines the nature of such interactions, but the underlying molecular mechanisms remain underexplored. Here, we investigated the molecular and metabolic basis for the bacterial lifestyle switch, from coexistence to pathogenicity, in Sulfitobacter D7 during its interaction with Emiliania huxleyi, a cosmopolitan bloom-forming phytoplankter. To unravel the bacterial lifestyle switch, we analyzed bacterial transcriptomes in response to exudates derived from algae in exponential growth and stationary phase, which supported the Sulfitobacter D7 coexistence and pathogenicity lifestyles, respectively. In pathogenic mode, Sulfitobacter D7 upregulated flagellar motility and diverse transport systems, presumably to maximize assimilation of E. huxleyi-derived metabolites released by algal cells upon cell death. Algal dimethylsulfoniopropionate (DMSP) was a pivotal signaling molecule that mediated the transition between the lifestyles, supporting our previous findings. However, the coexisting and pathogenic lifestyles were evident only in the presence of additional algal metabolites. Specifically, we discovered that algae-produced benzoate promoted the growth of Sulfitobacter D7 and hindered the DMSP-induced lifestyle switch to pathogenicity, demonstrating that benzoate is important for maintaining the coexistence of algae and bacteria. We propose that bacteria can sense the physiological state of the algal host through changes in the metabolic composition, which will determine the bacterial lifestyle during interaction.
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Affiliation(s)
- Noa Barak-Gavish
- Department of Plant and Environmental Sciences, Weizmann Institute of ScienceRehovotIsrael
| | - Bareket Dassa
- Life Sciences Core Facilities, Weizmann Institute of ScienceRehovotIsrael
| | - Constanze Kuhlisch
- Department of Plant and Environmental Sciences, Weizmann Institute of ScienceRehovotIsrael
| | - Inbal Nussbaum
- Department of Plant and Environmental Sciences, Weizmann Institute of ScienceRehovotIsrael
| | - Alexander Brandis
- Life Sciences Core Facilities, Weizmann Institute of ScienceRehovotIsrael
| | - Gili Rosenberg
- Department of Biological Regulation, Weizmann Institute of ScienceRehovotIsrael
| | - Roi Avraham
- Department of Biological Regulation, Weizmann Institute of ScienceRehovotIsrael
| | - Assaf Vardi
- Department of Plant and Environmental Sciences, Weizmann Institute of ScienceRehovotIsrael
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6
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Jung J, Seo YL, Jeong SE, Baek JH, Park HY, Jeon CO. Linear Six-Carbon Sugar Alcohols Induce Lysis of Microcystis aeruginosa NIES-298 Cells. Front Microbiol 2022; 13:834370. [PMID: 35495711 PMCID: PMC9039742 DOI: 10.3389/fmicb.2022.834370] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2021] [Accepted: 03/14/2022] [Indexed: 11/26/2022] Open
Abstract
Cyanobacterial blooms are a global concern due to their adverse effects on water quality and human health. Therefore, we examined the effects of various compounds on Microcystis aeruginosa growth. We found that Microcystis aeruginosa NIES-298 cells were lysed rapidly by linear six-carbon sugar alcohols including mannitol, galactitol, iditol, fucitol, and sorbitol, but not by other sugar alcohols. Microscopic observations revealed that mannitol treatment induced crumpled inner membrane, an increase in periplasmic space, uneven cell surface with outer membrane vesicles, disruption of membrane structures, release of intracellular matter including chlorophylls, and eventual cell lysis in strain NIES-298, which differed from the previously proposed cell death modes. Mannitol metabolism, antioxidant-mediated protection of mannitol-induced cell lysis by, and caspase-3 induction in strain NIES-298 were not observed, suggesting that mannitol may not cause organic matter accumulation, oxidative stress, and programmed cell death in M. aeruginosa. No significant transcriptional expression was induced in strain NIES-298 by mannitol treatment, indicating that cell lysis is not induced through transcriptional responses. Mannitol-induced cell lysis may be specific to strain NIES-298 and target a specific component of strain NIES-298. This study will provide a basis for controlling M. aeruginosa growth specifically by non-toxic substances.
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Affiliation(s)
- Jaejoon Jung
- Department of Life Science, Chung-Ang University, Seoul, South Korea
| | - Ye Lin Seo
- Department of Life Science, Chung-Ang University, Seoul, South Korea
| | - Sang Eun Jeong
- Department of Life Science, Chung-Ang University, Seoul, South Korea.,Nakdonggang National Institute of Biological Resources, Sangju, South Korea
| | - Ju Hye Baek
- Department of Life Science, Chung-Ang University, Seoul, South Korea
| | - Hye Yoon Park
- Department of Life Science, Chung-Ang University, Seoul, South Korea.,National Institute of Biological Resources, Incheon, South Korea
| | - Che Ok Jeon
- Department of Life Science, Chung-Ang University, Seoul, South Korea
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7
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Abdullah MA, Hussein HA. Integrated algal and oil palm biorefinery as a model system for bioenergy co-generation with bioproducts and biopharmaceuticals. BIORESOUR BIOPROCESS 2021; 8:40. [PMID: 38650258 PMCID: PMC10992906 DOI: 10.1186/s40643-021-00396-0] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2021] [Accepted: 05/11/2021] [Indexed: 01/03/2023] Open
Abstract
BACKGROUND There has been a greater call for greener and eco-friendly processes and bioproducts to meet the 2030's core agenda on 17 global sustainable development goals. The challenge lies in incorporating systems thinking with a comprehensive worldview as a guiding principle to develop the economy, whilst taking cognisance of the need to safeguard the environment, and to embrace the socio-cultural diversity dimension as an equal component. Any discussion on climate change, destruction of eco-system and habitat for wildlife, poverty and starvation, and the spread of infectious diseases, must be addressed together with the emphasis on the development of cleaner energy, air and water, better management of resources and biodiversity, improved agro-practices for food production and distribution, and affordable health care, as the outcomes and key performance indicators to be evaluated. Strict regulation, monitoring and enforcement to minimize emission, pollution and wastage must also be put in place. CONCLUSION This review article focuses on the research and development efforts to achieve sustainable bioenergy production, environmental remediation, and transformation of agro-materials into value-added bioproducts through the integrated algal and oil palm biorefinery. Recent development in microalgal research with nanotechnology as anti-cancer and antimicrobial agents and for biopharmaceutical applications are discussed. The life-cycle analysis in the context of palm oil mill processes is evaluated. The way forward from this integrated biorefinery concept is to strive for inclusive development strategies, and to address the immediate and pressing problems facing the Planet and the People, whilst still reaping the Profit.
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Affiliation(s)
- Mohd Azmuddin Abdullah
- Institute of Marine Biotechnology, Universiti Malaysia Terengganu, 21030, Kuala Nerus, Terengganu, Malaysia.
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8
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Kuhlisch C, Althammer J, Sazhin AF, Jakobsen HH, Nejstgaard JC, Pohnert G. Metabolomics-derived marker metabolites to characterize Phaeocystis pouchetii physiology in natural plankton communities. Sci Rep 2020; 10:20444. [PMID: 33235278 PMCID: PMC7686483 DOI: 10.1038/s41598-020-77169-w] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2020] [Accepted: 10/28/2020] [Indexed: 01/07/2023] Open
Abstract
Phaeocystis pouchetii (Hariot) Lagerheim, 1893 regularly dominates phytoplankton blooms in higher latitudes spanning from the English Channel to the Arctic. Through zooplankton grazing and microbial activity, it is considered to be a key resource for the entire marine food web, but the actual relevance of biomass transfer to higher trophic levels is still under discussion. Cell physiology and algal nutritional state are suggested to be major factors controlling the observed variability in zooplankton grazing. However, no data have so far yielded insights into the metabolic state of Phaeocystis populations that would allow testing this hypothesis. Therefore, endometabolic markers of different growth phases were determined in laboratory batch cultures using comparative metabolomics and quantified in different phytoplankton blooms in the field. Metabolites, produced during exponential, early and late stationary growth of P. pouchetii, were profiled using gas chromatography-mass spectrometry. Then, metabolites were characterized that correlate with the growth phases using multivariate statistical analysis. Free amino acids characterized the exponential growth, whereas the early stationary phase was correlated with sugar alcohols, mono- and disaccharides. In the late stationary phase, free fatty acids, sterols and terpenes increased. These marker metabolites were then traced in Phaeocystis blooms during a cruise in the Barents Sea and North Norwegian fjords. About 50 endometabolites of P. pouchetii were detected in natural phytoplankton communities. Mannitol, scyllo-inositol, 24-methylcholesta-5,22-dien-3β-ol, and several free fatty acids were characteristic for Phaeocystis-dominated blooms but showed variability between them. Distinct metabolic profiles were detected in the nutrient-depleted community in the inner Porsangerfjord (< 0.5 µM NO3-, < 0.1 µM PO 4 3- ), with high relative amounts of free mono- and disaccharides indicative for a limited culture. This study thereby shows how the variable physiology of phytoplankton can alter the metabolic landscape of entire plankton communities.
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Affiliation(s)
- Constanze Kuhlisch
- Institute for Inorganic and Analytical Chemistry, Friedrich Schiller University Jena, Lessingstraße 8, 07743, Jena, Germany.,Department of Plant and Environmental Sciences, Weizmann Institute of Science, 234 Herzl Street, 7610001, Rehovot, Israel
| | - Julia Althammer
- Institute for Inorganic and Analytical Chemistry, Friedrich Schiller University Jena, Lessingstraße 8, 07743, Jena, Germany.,JenaBios GmbH, Löbstedter Straße 80, 07749, Jena, Germany
| | - Andrey F Sazhin
- Shirshov Institute of Oceanology, Russian Academy of Sciences, Nakhimovsky Prospect 36, Moscow, Russia
| | - Hans H Jakobsen
- Department of Bioscience, Aarhus University, Frederiksborgvej 399, 4000, Roskilde, Denmark
| | - Jens C Nejstgaard
- Leibniz-Institute of Freshwater Ecology and Inland Fisheries, Dep. 3, Alte Fischerhütte 2, 16775, Stechlin, Germany
| | - Georg Pohnert
- Institute for Inorganic and Analytical Chemistry, Friedrich Schiller University Jena, Lessingstraße 8, 07743, Jena, Germany.
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9
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Mausz MA, Segovia M, Larsen A, Berger SA, Egge JK, Pohnert G. High CO 2 concentration and iron availability determine the metabolic inventory in an Emiliania huxleyi-dominated phytoplankton community. Environ Microbiol 2020; 22:3863-3882. [PMID: 32656913 DOI: 10.1111/1462-2920.15160] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2020] [Accepted: 07/08/2020] [Indexed: 11/27/2022]
Abstract
Ocean acidification (OA), a consequence of anthropogenic carbon dioxide (CO2 ) emissions, strongly impacts marine ecosystems. OA also influences iron (Fe) solubility, affecting biogeochemical and ecological processes. We investigated the interactive effects of CO2 and Fe availability on the metabolome response of a natural phytoplankton community. Using mesocosms we exposed phytoplankton to ambient (390 μatm) or future CO2 levels predicted for the year 2100 (900 μatm), combined with ambient (4.5 nM) or high (12 nM) dissolved iron (dFe). By integrating over the whole phytoplankton community, we assigned functional changes based on altered metabolite concentrations. Our study revealed the complexity of phytoplankton metabolism. Metabolic profiles showed three stages in response to treatments and phytoplankton dynamics. Metabolome changes were related to the plankton group contributing respective metabolites, explaining bloom decline and community succession. CO2 and Fe affected metabolic profiles. Most saccharides, fatty acids, amino acids and many sterols significantly correlated with the high dFe treatment at ambient pCO2 . High CO2 lowered the abundance of many metabolites irrespective of Fe. However, sugar alcohols accumulated, indicating potential stress. We demonstrate that not only altered species composition but also changes in the metabolic landscape affecting the plankton community may change as a consequence of future high-CO2 oceans.
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Affiliation(s)
- Michaela A Mausz
- Department for Bioorganic Analytics, Friedrich Schiller University Jena, Lessingstr. 8, Jena, 07743, Germany.,Leibniz Institute for Natural Product Research and Infection Biology, Hans Knöll Institute (HKI), Beutenbergstr. 11a, Jena, 07745, Germany.,School of Life Sciences, The University of Warwick, Gibbet Hill Campus, Coventry, CV4 7AL, United Kingdom
| | - María Segovia
- Department of Ecology, Faculty of Sciences, University of Málaga, Bulevar Louis Pasteur s/n, Málaga, 29071, Spain
| | - Aud Larsen
- NORCE Norwegian Research Centre AS, Nygårdsgaten 112, Bergen, 5038, Norway.,Department of Biology, University of Bergen, Thormøhlensgaten 53A/B, Bergen, 5020, Norway
| | - Stella A Berger
- Department of Biology, University of Bergen, Thormøhlensgaten 53A/B, Bergen, 5020, Norway.,Department of Experimental Limnology, Leibniz-Institute of Freshwater Ecology and Inland Fisheries (IGB), Alte Fischerhütte 2, Stechlin, 16775, Germany
| | - Jorun K Egge
- Department of Biology, University of Bergen, Thormøhlensgaten 53A/B, Bergen, 5020, Norway
| | - Georg Pohnert
- Department for Bioorganic Analytics, Friedrich Schiller University Jena, Lessingstr. 8, Jena, 07743, Germany
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10
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Iglesias MJ, Soengas R, Probert I, Guilloud E, Gourvil P, Mehiri M, López Y, Cepas V, Gutiérrez-Del-Río I, Redondo-Blanco S, Villar CJ, Lombó F, Soto S, Ortiz FL. NMR characterization and evaluation of antibacterial and antiobiofilm activity of organic extracts from stationary phase batch cultures of five marine microalgae (Dunaliella sp., D. salina, Chaetoceros calcitrans, C. gracilis and Tisochrysis lutea). PHYTOCHEMISTRY 2019; 164:192-205. [PMID: 31174083 DOI: 10.1016/j.phytochem.2019.05.001] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/09/2019] [Revised: 04/11/2019] [Accepted: 05/06/2019] [Indexed: 06/09/2023]
Abstract
The chemical composition of five marine microalgae (Dunaliella sp., Dunaliella salina, Chaetoceros calcitrans, Chaetoceros gracilis and Tisochrysis lutea) was investigated through nuclear magnetic resonance (NMR) spectroscopic study of the soluble material obtained by sequential extraction with hexane, ethyl acetate (AcOEt) and methanol of biomass from stationary phase cultures. Hexane extracted the major lipids present in the microalgae during the stationary phase of growth, which correspond to storage lipids. Triacylglycerols (TGs) were the only storage lipids produced by Dunaliella and Chaetoceros. In contrast, T. lutea predominantly stored polyunsaturated long-chain alkenones, with sterols also detected as minor components of the hexane extract. The molecular structure of brassicasterol was determined in T. lutea and the presence of squalene in this sample was also unequivocally detected. Monogalactosyldiacylglycerols (MGDGs) and pigments were concentrated in the AcOEt extracts. C. calcitrans and D. salina constituted an exception due to the high amount of TGs and glycerol produced, respectively, by these two strains. Chlorophylls a and b and β-carotene were the major pigments synthesized by Dunaliella and chlorophyll a and fucoxanthin were the only pigments detected in Chaetoceros and T. lutea. Information concerning the acyl chains present in TGs and MGDGs as well as the positional distribution of acyl chains on the glycerol moiety was obtained by NMR analysis of hexane and AcOEt extracts, with results consistent with those expected for the genera studied. Fatty acid composition of TGs in the two Dunaliella strains was different, with polyunsaturated acyl chains almost absent in the storage lipids produced by D. salina. Except in C. calcitrans, the polar nature of soluble compounds was inferred through the relative extraction yield using methanol as the extraction solvent. Glycerol was the major component of this fraction for the Dunaliella strains. In T. lutea 1,4/2,5-cyclohexanetetrol (CHT) and dimethylsulfoniopropionate (DMSP) preponderated. CHT was also the major polyol present in the Chaetoceros strains in which DMSP was not detected, but prominent signals of 2,3-dihydroxypropane-1-sulfonate (DHSP) were observed in the 1H NMR spectra of methanolic extracts. The presence of DHSP confirms the production of this metabolite by diatoms. In addition, several other minor compounds (digalactosyldiacyglycerols (DGDGs), sulphoquinovosyldiacylglycerols (SQDGs), amino acids, carbohydrates, scyllo-inositol, mannitol, lactic acid and homarine) were also identified in the methanolic extracts. The antibacterial and antibiofilm activities of the extracts were tested. The AcOEt extract from C. gracilis showed a moderate antibiofilm activity.
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Affiliation(s)
- Ma José Iglesias
- Área de Química Orgánica, Research Centre CIAIMBITAL, Universidad de Almería, Carretera de Sacramento s/n, Almería, 04120, Spain.
| | - Raquel Soengas
- Área de Química Orgánica, Research Centre CIAIMBITAL, Universidad de Almería, Carretera de Sacramento s/n, Almería, 04120, Spain
| | - Ian Probert
- Roscoff Culture Collection, FR2424 Station Biologique de Roscoff (Sorbonne Université / CNRS), 29680, Roscoff, France
| | - Emilie Guilloud
- Roscoff Culture Collection, FR2424 Station Biologique de Roscoff (Sorbonne Université / CNRS), 29680, Roscoff, France
| | - Priscillia Gourvil
- Roscoff Culture Collection, FR2424 Station Biologique de Roscoff (Sorbonne Université / CNRS), 29680, Roscoff, France
| | - Mohamed Mehiri
- Institut de Chimie de Nice, UMR CNRS 7272, Université Nice Sofia Antopolis, 06103, Nice, France
| | - Yuly López
- Barcelona Institute for Global Health (ISGlobal)-Hospital Clinic-Universitat de Barcelona, Carrer Rosselló 132, 08036, Barcelona, Spain
| | - Virginio Cepas
- Barcelona Institute for Global Health (ISGlobal)-Hospital Clinic-Universitat de Barcelona, Carrer Rosselló 132, 08036, Barcelona, Spain
| | - Ignacio Gutiérrez-Del-Río
- Research Group BIONUC, Departamento de Biología Funcional, Área de Microbiología, University of Oviedo, Oviedo, Principality of Asturias, Spain. IUOPA (Instituto Universitario de Oncología del Principado de Asturias), ISPA (Instituto de Investigación Sanitaria del Principado de Asturias), Spain
| | - Saúl Redondo-Blanco
- Research Group BIONUC, Departamento de Biología Funcional, Área de Microbiología, University of Oviedo, Oviedo, Principality of Asturias, Spain. IUOPA (Instituto Universitario de Oncología del Principado de Asturias), ISPA (Instituto de Investigación Sanitaria del Principado de Asturias), Spain
| | - Claudio J Villar
- Research Group BIONUC, Departamento de Biología Funcional, Área de Microbiología, University of Oviedo, Oviedo, Principality of Asturias, Spain. IUOPA (Instituto Universitario de Oncología del Principado de Asturias), ISPA (Instituto de Investigación Sanitaria del Principado de Asturias), Spain
| | - Felipe Lombó
- Research Group BIONUC, Departamento de Biología Funcional, Área de Microbiología, University of Oviedo, Oviedo, Principality of Asturias, Spain. IUOPA (Instituto Universitario de Oncología del Principado de Asturias), ISPA (Instituto de Investigación Sanitaria del Principado de Asturias), Spain
| | - Sara Soto
- Barcelona Institute for Global Health (ISGlobal)-Hospital Clinic-Universitat de Barcelona, Carrer Rosselló 132, 08036, Barcelona, Spain
| | - Fernando López Ortiz
- Área de Química Orgánica, Research Centre CIAIMBITAL, Universidad de Almería, Carretera de Sacramento s/n, Almería, 04120, Spain.
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11
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Dagley MJ, McConville MJ. DExSI: a new tool for the rapid quantitation of 13C-labelled metabolites detected by GC-MS. Bioinformatics 2019; 34:1957-1958. [PMID: 29360933 PMCID: PMC5972663 DOI: 10.1093/bioinformatics/bty025] [Citation(s) in RCA: 28] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2017] [Accepted: 01/16/2018] [Indexed: 01/10/2023] Open
Abstract
Summary Stable isotope directed metabolomics is increasingly being used to measure metabolic fluxes in microbial, plant and animal cells. Incorporation of 13C/15N isotopes into a wide range of metabolites is typically determined using gas chromatography-mass spectrometry (GC/MS) or other hyphenated mass spectrometry approaches. The DExSI (Data Extraction for Stable Isotope-labelled metabolites) pipeline is an interactive graphical software package which can be used to rapidly quantitate isotopologues for a wide variety of metabolites detected by GC/MS. DExSI performs automated metabolite annotation, mass and positional isotopomer abundance determination and natural isotope abundance correction. It provides a range of output options and is suitable for high throughput analyses. Availability and implementation DExSI is available for non-commercial use from: https://github.com/DExSI/DExSI/. For Microsoft Windows 7 or higher (64-bit). Supplementary information Supplementary data are available at Bioinformatics online.
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Affiliation(s)
- Michael J Dagley
- Department of Biochemistry and Molecular Biology, Bio21 Institute of Molecular Science and Biotechnology, University of Melbourne, Parkville, VIC 3010, Australia
| | - Malcolm J McConville
- Department of Biochemistry and Molecular Biology, Bio21 Institute of Molecular Science and Biotechnology, University of Melbourne, Parkville, VIC 3010, Australia
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12
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Heidenreich E, Wördenweber R, Kirschhöfer F, Nusser M, Friedrich F, Fahl K, Kruse O, Rost B, Franzreb M, Brenner-Weiß G, Rokitta S. Ocean acidification has little effect on the biochemical composition of the coccolithophore Emiliania huxleyi. PLoS One 2019; 14:e0218564. [PMID: 31291290 PMCID: PMC6619986 DOI: 10.1371/journal.pone.0218564] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2019] [Accepted: 05/31/2019] [Indexed: 11/18/2022] Open
Abstract
Owing to the hierarchical organization of biology, from genomes over transcriptomes and proteomes down to metabolomes, there is continuous debate about the extent to which data and interpretations derived from one level, e.g. the transcriptome, are in agreement with other levels, e.g. the metabolome. Here, we tested the effect of ocean acidification (OA; 400 vs. 1000 μatm CO2) and its modulation by light intensity (50 vs. 300 μmol photons m-2 s-1) on the biomass composition (represented by 75 key metabolites) of diploid and haploid life-cycle stages of the coccolithophore Emiliania huxleyi (RCC1216 and RCC1217) and compared these data with interpretations from previous physiological and gene expression screenings. The metabolite patterns showed minor responses to OA in both life-cycle stages. Whereas previous gene expression analyses suggested that the observed increased biomass buildup derived from lipid and carbohydrate storage, this dataset suggests that OA slightly increases overall biomass of cells, but does not significantly alter their metabolite composition. Generally, light was shown to be a more dominant driver of metabolite composition than OA, increasing the relative abundances of amino acids, mannitol and storage lipids, and shifting pigment contents to accommodate increased irradiance levels. The diploid stage was shown to contain vastly more osmolytes and mannitol than the haploid stage, which in turn had a higher relative content of amino acids, especially aromatic ones. Besides the differences between the investigated cell types and the general effects on biomass buildup, our analyses indicate that OA imposes only negligible effects on E. huxleyi´s biomass composition.
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Affiliation(s)
- Elena Heidenreich
- Analytical Biochemistry, Department of Bioengineering and Biosystems, Institute of Functional Interfaces, Karlsruhe Institute of Technology, Eggenstein-Leopoldshafen, Germany
- * E-mail: (EH); (SR)
| | - Robin Wördenweber
- Algae Biotechnology & Bioenergy, Department of Biology, Center for Biotechnology (CeBiTec), Bielefeld University, Bielefeld, Germany
| | - Frank Kirschhöfer
- Analytical Biochemistry, Department of Bioengineering and Biosystems, Institute of Functional Interfaces, Karlsruhe Institute of Technology, Eggenstein-Leopoldshafen, Germany
| | - Michael Nusser
- Analytical Biochemistry, Department of Bioengineering and Biosystems, Institute of Functional Interfaces, Karlsruhe Institute of Technology, Eggenstein-Leopoldshafen, Germany
| | - Frank Friedrich
- Competence Center for Material Moisture (CMM), Karlsruhe Institute for Technology, Hermann-von-Helmholtz-Platz 1, Eggenstein-Leopoldshafen, Germany
| | - Kirsten Fahl
- Marine Geology and Paleontology, Alfred-Wegener-Institute, Helmholtz-Centre for Polar and Marine Research, Bremerhaven, Germany
| | - Olaf Kruse
- Algae Biotechnology & Bioenergy, Department of Biology, Center for Biotechnology (CeBiTec), Bielefeld University, Bielefeld, Germany
| | - Björn Rost
- Marine Biogeosciences, Alfred-Wegener-Institute, Helmholtz-Centre for Polar and Marine Research, Bremerhaven, Germany
- University of Bremen, Bremen, Germany
| | - Matthias Franzreb
- Analytical Biochemistry, Department of Bioengineering and Biosystems, Institute of Functional Interfaces, Karlsruhe Institute of Technology, Eggenstein-Leopoldshafen, Germany
| | - Gerald Brenner-Weiß
- Analytical Biochemistry, Department of Bioengineering and Biosystems, Institute of Functional Interfaces, Karlsruhe Institute of Technology, Eggenstein-Leopoldshafen, Germany
| | - Sebastian Rokitta
- Marine Biogeosciences, Alfred-Wegener-Institute, Helmholtz-Centre for Polar and Marine Research, Bremerhaven, Germany
- * E-mail: (EH); (SR)
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13
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Villanova V, Fortunato AE, Singh D, Bo DD, Conte M, Obata T, Jouhet J, Fernie AR, Marechal E, Falciatore A, Pagliardini J, Le Monnier A, Poolman M, Curien G, Petroutsos D, Finazzi G. Investigating mixotrophic metabolism in the model diatom Phaeodactylum tricornutum. Philos Trans R Soc Lond B Biol Sci 2018; 372:rstb.2016.0404. [PMID: 28717014 DOI: 10.1098/rstb.2016.0404] [Citation(s) in RCA: 58] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 04/12/2017] [Indexed: 12/14/2022] Open
Abstract
Diatoms are prominent marine microalgae, interesting not only from an ecological point of view, but also for their possible use in biotechnology applications. They can be cultivated in phototrophic conditions, using sunlight as the sole energy source. Some diatoms, however, can also grow in a mixotrophic mode, wherein both light and external reduced carbon contribute to biomass accumulation. In this study, we investigated the consequences of mixotrophy on the growth and metabolism of the pennate diatom Phaeodactylum tricornutum, using glycerol as the source of reduced carbon. Transcriptomics, metabolomics, metabolic modelling and physiological data combine to indicate that glycerol affects the central-carbon, carbon-storage and lipid metabolism of the diatom. In particular, provision of glycerol mimics typical responses of nitrogen limitation on lipid metabolism at the level of triacylglycerol accumulation and fatty acid composition. The presence of glycerol, despite provoking features reminiscent of nutrient limitation, neither diminishes photosynthetic activity nor cell growth, revealing essential aspects of the metabolic flexibility of these microalgae and suggesting possible biotechnological applications of mixotrophy.This article is part of the themed issue 'The peculiar carbon metabolism in diatoms'.
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Affiliation(s)
- Valeria Villanova
- Fermentalg SA, 33500 Libourne, France.,Laboratoire de Physiologie Cellulaire et Végétale, Université Grenoble Alpes (UGA), Centre National de la Recherche Scientifique (CNRS), Commissariat à l'Energie Atomique et aux Energies Alternatives (CEA), Institut National Recherche Agronomique (INRA), Institut de Biosciences et Biotechnologies de Grenoble (BIG), CEA Grenoble, F-38000 Grenoble, France
| | - Antonio Emidio Fortunato
- Laboratoire de Biologie Computationnelle et Quantitative, Sorbonne Universités, UPMC, Institut de Biologie Paris-Seine, CNRS, 15 rue de l'Ecole de Médecine, Paris 75006, France
| | - Dipali Singh
- Department of Biological and Medical Sciences, Oxford Brookes University, Oxford OX3 0BP, UK
| | - Davide Dal Bo
- Laboratoire de Physiologie Cellulaire et Végétale, Université Grenoble Alpes (UGA), Centre National de la Recherche Scientifique (CNRS), Commissariat à l'Energie Atomique et aux Energies Alternatives (CEA), Institut National Recherche Agronomique (INRA), Institut de Biosciences et Biotechnologies de Grenoble (BIG), CEA Grenoble, F-38000 Grenoble, France
| | - Melissa Conte
- Laboratoire de Physiologie Cellulaire et Végétale, Université Grenoble Alpes (UGA), Centre National de la Recherche Scientifique (CNRS), Commissariat à l'Energie Atomique et aux Energies Alternatives (CEA), Institut National Recherche Agronomique (INRA), Institut de Biosciences et Biotechnologies de Grenoble (BIG), CEA Grenoble, F-38000 Grenoble, France
| | - Toshihiro Obata
- Max-Planck Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, 14476 Golm-Potsdam, Germany
| | - Juliette Jouhet
- Laboratoire de Physiologie Cellulaire et Végétale, Université Grenoble Alpes (UGA), Centre National de la Recherche Scientifique (CNRS), Commissariat à l'Energie Atomique et aux Energies Alternatives (CEA), Institut National Recherche Agronomique (INRA), Institut de Biosciences et Biotechnologies de Grenoble (BIG), CEA Grenoble, F-38000 Grenoble, France
| | - Alisdair R Fernie
- Max-Planck Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, 14476 Golm-Potsdam, Germany
| | - Eric Marechal
- Laboratoire de Physiologie Cellulaire et Végétale, Université Grenoble Alpes (UGA), Centre National de la Recherche Scientifique (CNRS), Commissariat à l'Energie Atomique et aux Energies Alternatives (CEA), Institut National Recherche Agronomique (INRA), Institut de Biosciences et Biotechnologies de Grenoble (BIG), CEA Grenoble, F-38000 Grenoble, France
| | - Angela Falciatore
- Laboratoire de Biologie Computationnelle et Quantitative, Sorbonne Universités, UPMC, Institut de Biologie Paris-Seine, CNRS, 15 rue de l'Ecole de Médecine, Paris 75006, France
| | | | | | - Mark Poolman
- Department of Biological and Medical Sciences, Oxford Brookes University, Oxford OX3 0BP, UK
| | - Gilles Curien
- Laboratoire de Physiologie Cellulaire et Végétale, Université Grenoble Alpes (UGA), Centre National de la Recherche Scientifique (CNRS), Commissariat à l'Energie Atomique et aux Energies Alternatives (CEA), Institut National Recherche Agronomique (INRA), Institut de Biosciences et Biotechnologies de Grenoble (BIG), CEA Grenoble, F-38000 Grenoble, France
| | - Dimitris Petroutsos
- Laboratoire de Physiologie Cellulaire et Végétale, Université Grenoble Alpes (UGA), Centre National de la Recherche Scientifique (CNRS), Commissariat à l'Energie Atomique et aux Energies Alternatives (CEA), Institut National Recherche Agronomique (INRA), Institut de Biosciences et Biotechnologies de Grenoble (BIG), CEA Grenoble, F-38000 Grenoble, France
| | - Giovanni Finazzi
- Laboratoire de Physiologie Cellulaire et Végétale, Université Grenoble Alpes (UGA), Centre National de la Recherche Scientifique (CNRS), Commissariat à l'Energie Atomique et aux Energies Alternatives (CEA), Institut National Recherche Agronomique (INRA), Institut de Biosciences et Biotechnologies de Grenoble (BIG), CEA Grenoble, F-38000 Grenoble, France
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14
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Paidi MK, Agarwal P, More P, Agarwal PK. Chemical Derivatization of Metabolite Mass Profiling of the Recretohalophyte Aeluropus lagopoides Revealing Salt Stress Tolerance Mechanism. MARINE BIOTECHNOLOGY (NEW YORK, N.Y.) 2017; 19:207-218. [PMID: 28527016 DOI: 10.1007/s10126-017-9745-9] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/05/2016] [Accepted: 02/06/2017] [Indexed: 06/07/2023]
Abstract
Plants are the primary producers of food for human being. Their intracellular environment alternation is influenced by abiotic stress factors such as drought, heat and soil salinity. Aeluropus lagopoides is a strong halophyte that grows with ease under high saline muddy banks of creeks of Gujarat, India. To study the response of salinity on metabolite changes in Aeluropus, three treatments, i.e. control, salinity and recovery, were selected for both shoot and root tissue. The cytosolic metabolite state was analysed by molecular chemical derivatization gas chromatography mass profiling. During saline treatment, significant increase of compatible solutes in shoot and root tissue was observed as compared to control. Subsequently, metabolic concentration decreased under recovery conditions. The metabolites like amino acids, organic acids and polyols were significantly detected in both shoot and root of Aeluropus under salinity. The metabolites like proline, aspartic acid, glycine, succinic acid and glycolic acid were significantly upregulated under stress. The salicylic acid was found to play a role in maintaining the polyols level by its down-regulation during salinity. The principle component analysis of all detected metabolites in both shoot and root showed that metabolites expressed under salinity (component 1) were highly variable, while metabolites expressed under recovery (component 2) were comparatively less variable as compared to control. The evolved intracellular compartmentalization of amino acids, organic acids and polyols in A. lagopoides can be a hallmark to sustaining at high salinity stress.
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Affiliation(s)
- Murali Krishna Paidi
- Plant Omics Division, CSIR-Central Salt and Marine Chemicals Research Institute (CSIR-CSMCRI), Council of Scientific and Industrial Research (CSIR), Gijubhai Badheka Marg, Bhavnagar, Gujarat, 364 002, India
| | - Parinita Agarwal
- Plant Omics Division, CSIR-Central Salt and Marine Chemicals Research Institute (CSIR-CSMCRI), Council of Scientific and Industrial Research (CSIR), Gijubhai Badheka Marg, Bhavnagar, Gujarat, 364 002, India
| | - Prashant More
- Plant Omics Division, CSIR-Central Salt and Marine Chemicals Research Institute (CSIR-CSMCRI), Council of Scientific and Industrial Research (CSIR), Gijubhai Badheka Marg, Bhavnagar, Gujarat, 364 002, India
- Academy of Scientific and Innovative Research, CSIR-Central Salt and Marine Chemicals Research Institute (CSIR-CSMCRI), Council of Scientific and Industrial Research (CSIR), Gijubhai Badheka Marg, Bhavnagar, Gujarat, 364 002, India
| | - Pradeep K Agarwal
- Plant Omics Division, CSIR-Central Salt and Marine Chemicals Research Institute (CSIR-CSMCRI), Council of Scientific and Industrial Research (CSIR), Gijubhai Badheka Marg, Bhavnagar, Gujarat, 364 002, India.
- Academy of Scientific and Innovative Research, CSIR-Central Salt and Marine Chemicals Research Institute (CSIR-CSMCRI), Council of Scientific and Industrial Research (CSIR), Gijubhai Badheka Marg, Bhavnagar, Gujarat, 364 002, India.
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15
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Taylor AR, Brownlee C, Wheeler G. Coccolithophore Cell Biology: Chalking Up Progress. ANNUAL REVIEW OF MARINE SCIENCE 2017; 9:283-310. [PMID: 27814031 DOI: 10.1146/annurev-marine-122414-034032] [Citation(s) in RCA: 58] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Coccolithophores occupy a special position within the marine phytoplankton because of their production of intricate calcite scales, or coccoliths. Coccolithophores are major contributors to global ocean calcification and long-term carbon fluxes. The intracellular production of coccoliths requires modifications to cellular ultrastructure and metabolism that are surveyed here. In addition to calcification, which appears to have evolved with a diverse range of functions, several other remarkable features that likely underpin the ecological and evolutionary success of coccolithophores have recently been uncovered. These include complex and varied life cycle strategies related to abiotic and biotic interactions as well as a range of novel metabolic pathways and nutritional strategies. Together with knowledge of coccolithophore genetic and physiological variability, these findings are beginning to shed new light on species diversity, distribution, and ecological adaptation. Further advances in genetics and functional characterization at the cellular level will likely to lead to a rapid increase in this understanding.
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Affiliation(s)
- Alison R Taylor
- Department of Biology and Marine Biology, University of North Carolina Wilmington, Wilmington, North Carolina 28403;
| | - Colin Brownlee
- Marine Biological Association, Plymouth PL1 2PB, United Kingdom; ,
- School of Ocean and Earth Science, National Oceanography Centre, University of Southampton, Southampton SO14 3ZH, United Kingdom
| | - Glen Wheeler
- Marine Biological Association, Plymouth PL1 2PB, United Kingdom; ,
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16
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A modified LC–MS/MS method to simultaneously quantify glycerol and mannitol concentrations in human urine for doping control purposes. J Chromatogr B Analyt Technol Biomed Life Sci 2016; 1022:153-158. [DOI: 10.1016/j.jchromb.2016.04.023] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2016] [Revised: 04/07/2016] [Accepted: 04/10/2016] [Indexed: 12/24/2022]
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17
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Knies D, Wittmüß P, Appel S, Sawodny O, Ederer M, Feuer R. Modeling and Simulation of Optimal Resource Management during the Diurnal Cycle in Emiliania huxleyi by Genome-Scale Reconstruction and an Extended Flux Balance Analysis Approach. Metabolites 2015; 5:659-76. [PMID: 26516924 PMCID: PMC4693189 DOI: 10.3390/metabo5040659] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2015] [Revised: 10/14/2015] [Accepted: 10/22/2015] [Indexed: 11/16/2022] Open
Abstract
The coccolithophorid unicellular alga Emiliania huxleyi is known to form large blooms, which have a strong effect on the marine carbon cycle. As a photosynthetic organism, it is subjected to a circadian rhythm due to the changing light conditions throughout the day. For a better understanding of the metabolic processes under these periodically-changing environmental conditions, a genome-scale model based on a genome reconstruction of the E. huxleyi strain CCMP 1516 was created. It comprises 410 reactions and 363 metabolites. Biomass composition is variable based on the differentiation into functional biomass components and storage metabolites. The model is analyzed with a flux balance analysis approach called diurnal flux balance analysis (diuFBA) that was designed for organisms with a circadian rhythm. It allows storage metabolites to accumulate or be consumed over the diurnal cycle, while keeping the structure of a classical FBA problem. A feature of this approach is that the production and consumption of storage metabolites is not defined externally via the biomass composition, but the result of optimal resource management adapted to the diurnally-changing environmental conditions. The model in combination with this approach is able to simulate the variable biomass composition during the diurnal cycle in proximity to literature data.
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Affiliation(s)
- David Knies
- Institute for System Dynamics, University of Stuttgart, Waldburgstrasse 17/19, Stuttgart 70563, Germany.
| | - Philipp Wittmüß
- Institute for System Dynamics, University of Stuttgart, Waldburgstrasse 17/19, Stuttgart 70563, Germany.
| | - Sebastian Appel
- Institute for System Dynamics, University of Stuttgart, Waldburgstrasse 17/19, Stuttgart 70563, Germany.
| | - Oliver Sawodny
- Institute for System Dynamics, University of Stuttgart, Waldburgstrasse 17/19, Stuttgart 70563, Germany.
| | - Michael Ederer
- Institute for System Dynamics, University of Stuttgart, Waldburgstrasse 17/19, Stuttgart 70563, Germany.
| | - Ronny Feuer
- Institute for System Dynamics, University of Stuttgart, Waldburgstrasse 17/19, Stuttgart 70563, Germany.
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18
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Tsuji Y, Yamazaki M, Suzuki I, Shiraiwa Y. Quantitative Analysis of Carbon Flow into Photosynthetic Products Functioning as Carbon Storage in the Marine Coccolithophore, Emiliania huxleyi. MARINE BIOTECHNOLOGY (NEW YORK, N.Y.) 2015; 17:428-440. [PMID: 25874681 PMCID: PMC4486895 DOI: 10.1007/s10126-015-9632-1] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/31/2014] [Accepted: 01/31/2015] [Indexed: 05/31/2023]
Abstract
The bloom-forming coccolithophore Emiliania huxleyi (Haptophyta) is a dominant marine phytoplankton, cells of which are covered with calcareous plates (coccoliths). E. huxleyi produces unique lipids of C37-C40 long-chain ketones (alkenones) with two to four trans-unsaturated bonds, β-glucan (but not α-glucan) and acid polysaccharide (AP) associated with the morphogenesis of CaCO3 crystals in coccoliths. Despite such unique features, there is no detailed information on the patterns of carbon allocation into these compounds. Therefore, we performed quantitative estimation of carbon flow into various macromolecular products by conducting (14)C-radiotracer experiments using NaH(14)CO3 as a substrate. Photosynthetic (14)C incorporation into low molecular-mass compounds (LMC), extracellular AP, alkenones, and total lipids except alkenones was estimated to be 35, 13, 17, and 25 % of total (14)C fixation in logarithmic growth phase cells and 33, 19, 18, and 18 % in stationary growth phase cells, respectively. However, less than 1 % of (14)C was incorporated into β-glucan in both cells. (14)C-mannitol occupied ca. 5 % of total fixed (14)C as the most dominant LMC product. Levels of all (14)C compounds decreased in the dark. Therefore, alkenones and LMC (including mannitol), but not β-glucan, function in carbon/energy storage in E. huxleyi, irrespective of the growth phase. Compared with other algae, the low carbon flux into β-glucan is a unique feature of carbon metabolism in E. huxelyi.
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Affiliation(s)
- Yoshinori Tsuji
- />Faculty of Life and Environmental Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8577 Japan
- />Core Research for Evolutional Science and Technology (CREST), Japan Science and Technology Agency (JST), Tsukuba, 305-8572 Japan
| | - Masatoshi Yamazaki
- />Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, 305-8572 Japan
| | - Iwane Suzuki
- />Faculty of Life and Environmental Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8577 Japan
- />Core Research for Evolutional Science and Technology (CREST), Japan Science and Technology Agency (JST), Tsukuba, 305-8572 Japan
| | - Yoshihiro Shiraiwa
- />Faculty of Life and Environmental Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8577 Japan
- />Core Research for Evolutional Science and Technology (CREST), Japan Science and Technology Agency (JST), Tsukuba, 305-8572 Japan
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19
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Mausz MA, Pohnert G. Phenotypic diversity of diploid and haploid Emiliania huxleyi cells and of cells in different growth phases revealed by comparative metabolomics. JOURNAL OF PLANT PHYSIOLOGY 2015; 172:137-148. [PMID: 25304662 DOI: 10.1016/j.jplph.2014.05.014] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/30/2013] [Revised: 05/06/2014] [Accepted: 05/06/2014] [Indexed: 06/04/2023]
Abstract
In phytoplankton a high species diversity of microalgae co-exists at a given time. But diversity is not only reflected by the species composition. Within these species different life phases as well as different metabolic states can cause additional diversity. One important example is the coccolithophore Emiliania huxleyi. Diploid cells play an important role in marine ecosystems since they can form massively abundant algal blooms but in addition the less abundant haploid life phase of E. huxleyi occurs in lower quantities. Both life phases may fulfill different functions in the plankton. We hypothesize that in addition to the functional diversity caused by this life phase transition the growth stage of cells can also influence the metabolic composition and thus the ecological impact of E. huxleyi. Here we introduce a metabolomic survey in dependence of life phases as well as different growth phases to reveal such changes. The comparative metabolomic approach is based on the extraction of intracellular metabolites from intact microalgae, derivatization and analysis by gas chromatography coupled to mass spectrometry (GC-MS). Automated data processing and statistical analysis using canonical analysis of principal coordinates (CAP) revealed unique metabolic profiles for each life phase. Concerning the correlations of metabolites to growth phases, complex patterns were observed. As for example the saccharide mannitol showed its highest concentration in the exponential phase, whereas fatty acids were correlated to stationary and sterols to declining phase. These results are indicative for specific ecological roles of these stages of E. huxleyi and are discussed in the context of previous physiological and ecological studies.
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Affiliation(s)
- Michaela A Mausz
- Department for Bioorganic Analytics, Friedrich Schiller University Jena, Lessingstr. 8, 07743 Jena, Germany; Leibniz Institute for Natural Product Research and Infection Biology, Hans Knöll Institute (HKI), Beutenbergstr. 11a, 07745 Jena, Germany
| | - Georg Pohnert
- Department for Bioorganic Analytics, Friedrich Schiller University Jena, Lessingstr. 8, 07743 Jena, Germany.
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