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Noordine ML, Seyoum Y, Bruneau A, Baye K, Lefebvre T, Cherbuy C, Canonne-Hergaux F, Nicolas G, Humblot C, Thomas M. The microbiota and the host organism switch between cooperation and competition based on dietary iron levels. Gut Microbes 2024; 16:2361660. [PMID: 38935764 PMCID: PMC11212566 DOI: 10.1080/19490976.2024.2361660] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 02/13/2024] [Accepted: 05/24/2024] [Indexed: 06/29/2024] Open
Abstract
The microbiota significantly impacts digestive epithelium functionality, especially in nutrient processing. Given the importance of iron for both the host and the microbiota, we hypothesized that host-microbiota interactions fluctuate with dietary iron levels. We compared germ-free (GF) and conventional mice (SPF) fed iron-containing (65 mg/Kg) or iron-depleted (<6 mg/Kg) diets. The efficacy of iron privation was validated by iron blood parameters. Ferritin and Dmt1, which represent cellular iron storage and transport respectively, were studied in tissues where they are abundant: the duodenum, liver and lung. When the mice were fed an iron-rich diet, the microbiota increased blood hemoglobin and hepcidin and the intestinal ferritin levels, suggesting that the microbiota helps iron storage. When iron was limiting, the microbiota inhibited the expression of the intestinal Dmt1 transporter, likely via the pathway triggered by Hif-2α. The microbiota assists the host in storing intestinal iron when it is abundant and competes with the host by inhibiting Dmt1 in conditions of iron scarcity. Comparison between duodenum, liver and lung indicates organ-specific responses to microbiota and iron availability. Iron depletion induced temporal changes in microbiota composition and activity, reduced α-diversity of microbiota, and led to Lactobacillaceae becoming particularly more abundant after 60 days of privation. By inoculating GF mice with a simplified bacterial mixture, we show that the iron-depleted host favors the gut fitness of Bifidobacterium longum.
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Affiliation(s)
- Marie-Louise Noordine
- Micalis Institute, Institut national de recherche pour l’agriculture, l’alimentation et l’environnement (INRAE), AgroParisTech, Université Paris-Saclay, UMR1319, Jouy-en-Josas, France
- Center for Microbiome Medicine (PaCeMM) FHU, AP-HP, Paris, Ile-de-France, France
| | - Yohannes Seyoum
- Micalis Institute, Institut national de recherche pour l’agriculture, l’alimentation et l’environnement (INRAE), AgroParisTech, Université Paris-Saclay, UMR1319, Jouy-en-Josas, France
- Center for Food Science and Nutrition, College of Natural and Computational Sciences, Addis Ababa University, Addis Ababa, Ethiopia
- QualiSud, Université de Montpellier, Avignon Université, CIRAD, Institut Agro, IRD, Université de la Réunion, Montpellier Cedex, France
| | - Aurélia Bruneau
- Micalis Institute, Institut national de recherche pour l’agriculture, l’alimentation et l’environnement (INRAE), AgroParisTech, Université Paris-Saclay, UMR1319, Jouy-en-Josas, France
- Center for Microbiome Medicine (PaCeMM) FHU, AP-HP, Paris, Ile-de-France, France
| | - Kaleab Baye
- Center for Food Science and Nutrition, College of Natural and Computational Sciences, Addis Ababa University, Addis Ababa, Ethiopia
| | - Thibaud Lefebvre
- Assistance Publique-Hôpitaux de Paris, Centre Français des Porphyries, Hôpital Louis Mourier, Colombes, France
- Institut National de la Santé et de la Recherche Médicale, U1149, Centre de Recherches sur l’Inflammation, Paris, France
| | - Claire Cherbuy
- Micalis Institute, Institut national de recherche pour l’agriculture, l’alimentation et l’environnement (INRAE), AgroParisTech, Université Paris-Saclay, UMR1319, Jouy-en-Josas, France
- Center for Microbiome Medicine (PaCeMM) FHU, AP-HP, Paris, Ile-de-France, France
| | - François Canonne-Hergaux
- IRSD, Université de Toulouse, INSERM, INRAE, ENVT, Univ Toulouse III - Paul Sabatier (UPS), Toulouse, France
- U1188 DéTROI, Université de La Réunion, Paris, France
| | - Gaël Nicolas
- Institut National de la Santé et de la Recherche Médicale, U1149, Centre de Recherches sur l’Inflammation, Paris, France
- Université Paris Diderot, site Bichat, Sorbonne Paris Cité, Paris, Ile-de-France, France
| | - Christèle Humblot
- QualiSud, Université de Montpellier, Avignon Université, CIRAD, Institut Agro, IRD, Université de la Réunion, Montpellier Cedex, France
| | - Muriel Thomas
- Micalis Institute, Institut national de recherche pour l’agriculture, l’alimentation et l’environnement (INRAE), AgroParisTech, Université Paris-Saclay, UMR1319, Jouy-en-Josas, France
- Center for Microbiome Medicine (PaCeMM) FHU, AP-HP, Paris, Ile-de-France, France
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Gunzburg WH, Aung MM, Toa P, Ng S, Read E, Tan WJ, Brandtner EM, Dangerfield J, Salmons B. Efficient protection of microorganisms for delivery to the intestinal tract by cellulose sulphate encapsulation. Microb Cell Fact 2020; 19:216. [PMID: 33243224 PMCID: PMC7691082 DOI: 10.1186/s12934-020-01465-3] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2020] [Accepted: 10/28/2020] [Indexed: 01/17/2023] Open
Abstract
BACKGROUND Gut microbiota in humans and animals play an important role in health, aiding in digestion, regulation of the immune system and protection against pathogens. Changes or imbalances in the gut microbiota (dysbiosis) have been linked to a variety of local and systemic diseases, and there is growing evidence that restoring the balance of the microbiota by delivery of probiotic microorganisms can improve health. However, orally delivered probiotic microorganisms must survive transit through lethal highly acid conditions of the stomach and bile salts in the small intestine. Current methods to protect probiotic microorganisms are still not effective enough. RESULTS We have developed a cell encapsulation technology based on the natural polymer, cellulose sulphate (CS), that protects members of the microbiota from stomach acid and bile. Here we show that six commonly used probiotic strains (5 bacteria and 1 yeast) can be encapsulated within CS microspheres. These encapsulated strains survive low pH in vitro for at least 4 h without appreciable loss in viability as compared to their respective non-encapsulated counterparts. They also survive subsequent exposure to bile. The CS microspheres can be digested by cellulase at concentrations found in the human intestine, indicating one mechanism of release. Studies in mice that were fed CS encapsulated autofluorescing, commensal E. coli demonstrated release and colonization of the intestinal tract. CONCLUSION Taken together, the data suggests that CS microencapsulation can protect bacteria and yeasts from viability losses due to stomach acid, allowing the use of lower oral doses of probiotics and microbiota, whilst ensuring good intestinal delivery and release.
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Affiliation(s)
- Walter H Gunzburg
- Austrianova Singapore, 41 Science Park Road, #03-15 The Gemini, Singapore, 117610, Singapore. .,Institute of Virology, Department of Pathobiology, University of Veterinary Medicine, 1210, Vienna, Austria.
| | - Myo Myint Aung
- Austrianova Singapore, 41 Science Park Road, #03-15 The Gemini, Singapore, 117610, Singapore
| | - Pauline Toa
- Austrianova Singapore, 41 Science Park Road, #03-15 The Gemini, Singapore, 117610, Singapore
| | - Shirelle Ng
- Austrianova Singapore, 41 Science Park Road, #03-15 The Gemini, Singapore, 117610, Singapore
| | - Eliot Read
- Austrianova Singapore, 41 Science Park Road, #03-15 The Gemini, Singapore, 117610, Singapore
| | - Wee Jin Tan
- Austrianova Singapore, 41 Science Park Road, #03-15 The Gemini, Singapore, 117610, Singapore
| | - Eva Maria Brandtner
- Austrianova Singapore, 41 Science Park Road, #03-15 The Gemini, Singapore, 117610, Singapore.,VIVIT - Vorarlberg Institute for Vascular Investigation and Treatment, Feldkirch, Austria
| | - John Dangerfield
- Austrianova Singapore, 41 Science Park Road, #03-15 The Gemini, Singapore, 117610, Singapore
| | - Brian Salmons
- Austrianova Singapore, 41 Science Park Road, #03-15 The Gemini, Singapore, 117610, Singapore
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