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Ekrek S, Şenkardeş S, Erdoğan Ö, Çevik Ö. Synthesis and biological evaluation of thiazole and thiadiazole derivatives as potential anticancer agents. PHOSPHORUS SULFUR 2022. [DOI: 10.1080/10426507.2022.2136665] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/31/2022]
Affiliation(s)
- Sedanur Ekrek
- Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Marmara University, İstanbul, Turkey
| | - Sevil Şenkardeş
- Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Marmara University, İstanbul, Turkey
| | - Ömer Erdoğan
- Department of Biochemistry, School of Medicine, Adnan Menderes University, Aydın, Turkey
| | - Özge Çevik
- Department of Biochemistry, School of Medicine, Adnan Menderes University, Aydın, Turkey
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Mejía Zarate F, Carranza MA, Miquel HT, Bazán-Jiménez A, García-Revilla MA, Martínez JLB. Synthesis and computational characterization of aryl-fluorinated thiazoles; experimental, DFT and molecular coupling studies. J Fluor Chem 2022. [DOI: 10.1016/j.jfluchem.2022.110024] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/16/2022]
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A pH-responsive fluorescent sensor based on a new pyranoxanthylium salt. Photochem Photobiol Sci 2021; 20:513-521. [PMID: 33721279 DOI: 10.1007/s43630-021-00033-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2020] [Accepted: 03/02/2021] [Indexed: 10/21/2022]
Abstract
Stimuli-responsive pigments are very interesting for several technological applications, such as food and cosmetic colorants, color-based sensors and fluorescence probes, among others. In this work, the synthesis of a new xanthylium-derived pigment was developed and the chemical and photophysical properties in hydroalcoholic solution at different pH values were investigated by UV-Vis and fluorescence spectroscopy. The UV-Vis titration of 3,6,8-trihydroxy-11-methylpyranoxanthylium has shown four different colored chemical species (AH+, A, A- and A2-) in hydroalcoholic solution in a pH range between 1 and 12 with the thermodynamic acidic constants of pKa1 = 4.80 ± 0.03, pKa2 = 6.51 ± 0.05 and pKa3 = 8.64 ± 0.01. Regarding fluorescence properties, this dye revealed an interesting pH-dependent emission behavior. In fact, the anionic quinoidal base A- predominant at pH range between 5 and 9 should be mainly responsible for the pronounced fluorescence intensity observed at λex 467 nm/λem 510 nm pair (maximum at pH 7.5). This set of new insights make this dye useful as a potential "off-on-off" pH-responsive fluorescent probe for biological applications. A pyranoxanthylium dye was developed and revealed a selective fluorescence emission between 5 < pH < 9, being maximum at pH 7.5, which make it very interesting as a pH-responsive "off-on-off" fluorescent probe for biomedical applications.
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Eğlence-Bakır S, Celik S, Şahin M, Ozel AE, Akyuz S, Ülküseven B. Synthesis, molecular modelling, FT-IR, Raman and NMR characterization, molecular docking and ADMET study of new nickel(II) complex with an N 4-tetradentate thiosemicarbazone. J Biomol Struct Dyn 2020; 39:4212-4224. [PMID: 32462981 DOI: 10.1080/07391102.2020.1775128] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
Abstract
A new nickel(II) complex was synthesized by using S-propyl-thiosemicarbazide and 2-amino-3,5-dibromobenzaldehyde. The complex, obtained by the template effect of nickel ions, was structurally analysed by experimental and theoretical vibrational spectroscopy, NMR and density functional theory (DFT) calculations. By using DFT/B3LYP method with 6-311++G(d, p) basis set, the most stable molecular structure of the title molecule was calculated. The fundamental vibrational wavenumbers, IR and Raman intensities for the optimized structure of the molecule under investigation were determined and compared with the experimental vibrational spectra. The vibrational assignment was achieved using the calculated potential energy distributions of the vibrational modes. Moreover, the molecular electrostatic potential (MEP), the highest occupied molecular orbital (HOMO) and the lowest occupied molecular orbital (LUMO) energies were calculated, Molecular docking of the molecule was carried out against DNA in order to identify the potential inhibitory action of the title compound. The findings suggested that the aforementioned compound has a strong binding affinity to interact with DNA residues DT8, DC9, DG12, DG16, DA17, and DA18 through the intermolecular hydrogen bonds. Also the performed in silico ADMET analysis was the prediction of the synthesized molecule's pharmacokinetic and toxicity profile expressing good oral drug like actions and non-toxic nature. The complex has been shown to have the possibility to become a model molecule for drug development processes.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
| | - Sefa Celik
- Department of Physics, Science Faculty, Istanbul University, Istanbul, Turkey
| | - Musa Şahin
- Department of Chemistry, Science Faculty, Istanbul University, Istanbul, Turkey
| | - Aysen E Ozel
- Department of Physics, Science Faculty, Istanbul University, Istanbul, Turkey
| | - Sevim Akyuz
- Department of Physics, Science and Letters Faculty, Istanbul Kultur University, Istanbul, Turkey
| | - Bahri Ülküseven
- Department of Chemistry, Engineering Faculty, Istanbul University-Cerrahpaşa, Istanbul, Turkey
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Li X, Liu S, Yan W, Shen M, Xue C. Crystal structure of ( E)-2-(2-chloro-6-hydroxybenzylidene)hydrazine-1-carbothioamide, C 8H 8ClN 3O 4S. Z KRIST-NEW CRYST ST 2019. [DOI: 10.1515/ncrs-2019-0410] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Abstract
C8H8ClN3O4S, monoclinic, P21/c (no. 14), a = 12.662(2) Å, b = 5.2782(8) Å, c = 14.841(2) Å, β = 94.103(3)°, V = 989.3(3) Å3, Z = 4, R
gt(F) = 0.0317, wR
ref(F
2) = 0.1232, T = 293(2) K.
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Affiliation(s)
- Xia Li
- School of Biological and Chemical Engineering, Nanyang Institute of Technology , 473004 Nanyang, Henan , P.R. China
| | - Shangjun Liu
- School of Biological and Chemical Engineering, Nanyang Institute of Technology , 473004 Nanyang, Henan , P.R. China
| | - Weihong Yan
- School of Biological and Chemical Engineering, Nanyang Institute of Technology , 473004 Nanyang, Henan , P.R. China
| | - Mingle Shen
- School of Biological and Chemical Engineering, Nanyang Institute of Technology , 473004 Nanyang, Henan , P.R. China
| | - Chaohui Xue
- School of Biological and Chemical Engineering, Nanyang Institute of Technology , 473004 Nanyang, Henan , P.R. China
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Liu C. Crystal structure of ( E)-2-((4-chlorophenyl)(phenyl)methylene)hydrazine-1-carbothioamide, C 14H 12ClN 3S. Z KRIST-NEW CRYST ST 2019. [DOI: 10.1515/ncrs-2018-0515] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Abstract
C14H12ClN3S, monoclinic, C2/c (no. 15), a = 27.967(7) Å, b = 5.9290(13) Å, c = 19.698(5) Å, β = 118.122(3)°, V = 2880.6(11) Å3, Z = 8, R
gt(F) = 0.0369, wR
ref(F
2) = 0.1082, T = 293(2) K.
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Affiliation(s)
- Chao Liu
- Changsha Environmental Protection College , 410004, Changsha, Hunan , People’s Republic of China
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Structure elucidation, DNA binding, DFT, molecular docking and cytotoxic activity studies on novel single crystal (E)-1-(2-fluorobenzylidene)thiosemicarbazide. JOURNAL OF SAUDI CHEMICAL SOCIETY 2018. [DOI: 10.1016/j.jscs.2018.05.002] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
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Crystal structure of 2-(bis(4-fluorophenyl)methylene)hydrazine-1-carbothioamide, C 14H 11F 2N 3S. Z KRIST-NEW CRYST ST 2018. [DOI: 10.1515/ncrs-2018-0214] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Abstract
C14H11F2N3S, monoclinic, C2/c (no. 15), a = 18.5399(19) Å, b = 9.5907(10) Å, c = 16.8149(17) Å, β = 111.307(2)°, V = 2785.5(5) Å3, Z = 8, R
gt(F) = 0.0390, wR
ref(F
2) = 0.1317, T = 293(2) K.
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Alvarado SR, Shortt IA, Fan HJ, Vela J. Assessing Phosphine–Chalcogen Bond Energetics from Calculations. Organometallics 2015. [DOI: 10.1021/acs.organomet.5b00428] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
- Samuel R. Alvarado
- Department
of Chemistry, Iowa State University, Ames, Iowa 50011, United States
- Ames Laboratory, Ames, Iowa 50011, United States
| | - Ian A. Shortt
- Department of Chemistry, Prairie View A&M University, Prairie View, Texas 77446, United States
| | - Hua-Jun Fan
- Department of Chemistry, Prairie View A&M University, Prairie View, Texas 77446, United States
| | - Javier Vela
- Department
of Chemistry, Iowa State University, Ames, Iowa 50011, United States
- Ames Laboratory, Ames, Iowa 50011, United States
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