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Epiktetov DO, Sviridov AV, Tarlachkov SV, Shushkova TV, Toropygin IY, Leontievsky AA. Glyphosate-Induced Phosphonatase Operons in Soil Bacteria of the Genus Achromobacter. Int J Mol Sci 2024; 25:6409. [PMID: 38928116 PMCID: PMC11203657 DOI: 10.3390/ijms25126409] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2024] [Revised: 05/24/2024] [Accepted: 05/28/2024] [Indexed: 06/28/2024] Open
Abstract
Achromobacter insolitus and Achromobacter aegrifaciens, bacterial degraders of the herbicide glyphosate, were found to induce phosphonatase (phosphonoacetaldehyde hydrolase, EC 3.11.1.1) when grown on minimal media with glyphosate as the sole source of phosphorus. The phosphonatases of the strains were purified to an electrophoretically homogeneous state and characterized. The enzymes differed in their kinetic characteristics and some other parameters from the previously described phosphonatases. The phosphonatase of A. insolitus was first revealed to separate into two stable forms, which had similar kinetic characteristics but interacted differently with affinity and ion-exchange resins. The genomes of the investigated bacteria were sequenced. The phosphonatase genes were identified, and their context was determined: the bacteria were shown to have gene clusters, which, besides the phosphonatase operon, included genes for LysR-type transcription activator (substrate sensor) and putative iron-containing oxygenase PhnHD homologous to monooxygenases PhnY and TmpB of marine organophosphonate degraders. Genes of 2-aminoethylphosphonate aminotransferase (PhnW, EC 2.6.1.37) were absent in the achromobacterial phosphonatase operons; instead, we revealed the presence of genes encoding the putative flavin oxidase HpnW. In silico simulation showed 1-hydroxy-2-aminoethylphosphonate to be the most likely substrate of the new monooxygenase, and a number of glycine derivatives structurally similar to glyphosate to be substrates of flavin oxidase.
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Affiliation(s)
- Dmitry O. Epiktetov
- G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms, Federal Research Center “Pushchino Scientific Center for Biological Research of the Russian Academy of Sciences”, Russian Academy of Sciences, 5 Prosp. Nauki, 142290 Pushchino, Russia; (D.O.E.); (S.V.T.); (T.V.S.); (A.A.L.)
| | - Alexey V. Sviridov
- G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms, Federal Research Center “Pushchino Scientific Center for Biological Research of the Russian Academy of Sciences”, Russian Academy of Sciences, 5 Prosp. Nauki, 142290 Pushchino, Russia; (D.O.E.); (S.V.T.); (T.V.S.); (A.A.L.)
| | - Sergey V. Tarlachkov
- G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms, Federal Research Center “Pushchino Scientific Center for Biological Research of the Russian Academy of Sciences”, Russian Academy of Sciences, 5 Prosp. Nauki, 142290 Pushchino, Russia; (D.O.E.); (S.V.T.); (T.V.S.); (A.A.L.)
- Branch of Shemyakin—Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Puschino, 142290 Moscow, Russia
| | - Tatyana V. Shushkova
- G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms, Federal Research Center “Pushchino Scientific Center for Biological Research of the Russian Academy of Sciences”, Russian Academy of Sciences, 5 Prosp. Nauki, 142290 Pushchino, Russia; (D.O.E.); (S.V.T.); (T.V.S.); (A.A.L.)
| | - Ilya Yu. Toropygin
- V.N. Orekhovich Research Institute of Biomedical Chemistry, Bld. 8, 10 Pogodinskaya Str., 119121 Moscow, Russia;
| | - Alexey A. Leontievsky
- G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms, Federal Research Center “Pushchino Scientific Center for Biological Research of the Russian Academy of Sciences”, Russian Academy of Sciences, 5 Prosp. Nauki, 142290 Pushchino, Russia; (D.O.E.); (S.V.T.); (T.V.S.); (A.A.L.)
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Petrone DA, Szkop KM, Miao L, St Onge P, Qu ZW, Grimme S, Stephan DW. A Primary Acyl Phosphine Stabilized by a Phosphonium Ylide. Angew Chem Int Ed Engl 2021; 60:18547-18551. [PMID: 34125463 DOI: 10.1002/anie.202106846] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2021] [Indexed: 11/07/2022]
Abstract
Primary acyl-phosphines are scarce in the literature. Here we show that the reaction of Ph3 GePCO with the ylide Ph3 PCH2 proceeds to give the species Ph3 PCHC(O)PH(GePh3 ) 1. Deprotonation of 1 with Na[N(SiMe3 )2 ] generates the salt [Na(THF)2 ][Ph3 PCHC(O)P(GePh3 )] 2 which provides subsequent access to the bis-germanylated acylphosphine, Ph3 PCHC(O)P(GePh3 )2 3. Alternatively, treatment of 1 with HCl in dioxane affords the primary acylphosphine Ph3 PCHC(O)PH2 4. Compound 4 is a rare example of an air stable primary acyl-phosphines and the first devoid of a stabilizing heteroatom adjacent to the carbonyl fragment.
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Affiliation(s)
- David A Petrone
- Department of Chemistry, University of Toronto, 80 St. George St., Toronto, Ontario, M5S3H6, Canada
| | - Kevin M Szkop
- Department of Chemistry, University of Toronto, 80 St. George St., Toronto, Ontario, M5S3H6, Canada
| | - Linkun Miao
- Department of Chemistry, University of Toronto, 80 St. George St., Toronto, Ontario, M5S3H6, Canada
| | - Piers St Onge
- Department of Chemistry, University of Toronto, 80 St. George St., Toronto, Ontario, M5S3H6, Canada
| | - Zheng-Wang Qu
- Mulliken Center for Theoretical Chemistry, Institut für Physikalische und Theoretische Chemie, Rheinische Friedrich-Wilhelms-Universität Bonn, Beringstrasse 4, 53115, Bonn, Germany
| | - Stefan Grimme
- Mulliken Center for Theoretical Chemistry, Institut für Physikalische und Theoretische Chemie, Rheinische Friedrich-Wilhelms-Universität Bonn, Beringstrasse 4, 53115, Bonn, Germany
| | - Douglas W Stephan
- Department of Chemistry, University of Toronto, 80 St. George St., Toronto, Ontario, M5S3H6, Canada
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Petrone DA, Szkop KM, Miao L, St. Onge P, Qu Z, Grimme S, Stephan DW. A Primary Acyl Phosphine Stabilized by a Phosphonium Ylide. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202106846] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- David A. Petrone
- Department of Chemistry University of Toronto 80 St. George St. Toronto Ontario M5S3H6 Canada
| | - Kevin M. Szkop
- Department of Chemistry University of Toronto 80 St. George St. Toronto Ontario M5S3H6 Canada
| | - Linkun Miao
- Department of Chemistry University of Toronto 80 St. George St. Toronto Ontario M5S3H6 Canada
| | - Piers St. Onge
- Department of Chemistry University of Toronto 80 St. George St. Toronto Ontario M5S3H6 Canada
| | - Zheng‐Wang Qu
- Mulliken Center for Theoretical Chemistry Institut für Physikalische und Theoretische Chemie Rheinische Friedrich-Wilhelms-Universität Bonn Beringstrasse 4 53115 Bonn Germany
| | - Stefan Grimme
- Mulliken Center for Theoretical Chemistry Institut für Physikalische und Theoretische Chemie Rheinische Friedrich-Wilhelms-Universität Bonn Beringstrasse 4 53115 Bonn Germany
| | - Douglas W. Stephan
- Department of Chemistry University of Toronto 80 St. George St. Toronto Ontario M5S3H6 Canada
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New synthesis of trimethylsilyl esters of phosphorus(III) acids. MONATSHEFTE FUR CHEMIE 2019. [DOI: 10.1007/s00706-019-02511-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Szkop KM, Jupp AR, Razumkov H, Xu M, Stephan DW. Diphospha-Ureas from the Phosphaketene Ph 3 GePCO. Chemistry 2019; 25:10084-10087. [PMID: 31215687 DOI: 10.1002/chem.201902789] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2019] [Indexed: 11/12/2022]
Abstract
The phosphaketene Ph3 GePCO is shown to react with the phosphide KP(tBu)2 to generate the anion [Ph3 GePC(O)P(tBu)2 ]- 1. This species reacts with CH3 I or ClGePh3 to give the dissymmetric diphospha-ureas (tBu)2 PC(O)P(GePh3 )(CH3 ) 2 and (Ph3 Ge)2 PC(O)P(tBu)2 3 respectively. Sequential treatment of 2 with a base and CH3 I affords a route to (tBu)2 PC(O)P(CH3 )2 5. These species are products of the first modular diphospha-urea synthesis. The subsequent thermal and photochemical reactivity of these species was also probed and described.
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Affiliation(s)
- Kevin M Szkop
- Department of Chemistry, University of Toronto, 80 St. George St. Toronto, Ontario, M5S3H6, Canada
| | - Andrew R Jupp
- Department of Chemistry, University of Toronto, 80 St. George St. Toronto, Ontario, M5S3H6, Canada
| | - Hlib Razumkov
- Department of Chemistry, University of Toronto, 80 St. George St. Toronto, Ontario, M5S3H6, Canada
| | - Maotong Xu
- Department of Chemistry, University of Toronto, 80 St. George St. Toronto, Ontario, M5S3H6, Canada
| | - Douglas W Stephan
- Department of Chemistry, University of Toronto, 80 St. George St. Toronto, Ontario, M5S3H6, Canada
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Szkop KM, Jupp AR, Stephan DW. P, P-Dimethylformylphosphine: The Phosphorus Analogue of N, N-Dimethylformamide. J Am Chem Soc 2018; 140:12751-12755. [PMID: 30269479 DOI: 10.1021/jacs.8b09266] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Abstract
The neutral PCO derivative Ph3GePCO undergoes addition of borohydride to generate the anion [Ph3GePC(H)OBPh3]-. A subsequent deprotection strategy provides access to the monomethyl and dimethylformyl phosphines, Ph3GeP(Me)C(H)O and Me2PC(H)O, respectively. The latter species which is the phosphorus analogue of DMF, was characterized and shown to complex via phosphorus to Ru. A computational study also highlights the similarities and differences between the P- and N-containing molecules.
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Affiliation(s)
- Kevin M Szkop
- Department of Chemistry , University of Toronto , 80 St. George Street , Toronto , Ontario M5S3H6 , Canada
| | - Andrew R Jupp
- Department of Chemistry , University of Toronto , 80 St. George Street , Toronto , Ontario M5S3H6 , Canada
| | - Douglas W Stephan
- Department of Chemistry , University of Toronto , 80 St. George Street , Toronto , Ontario M5S3H6 , Canada
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Morgalyuk VP, Strelkova TV, Kagramanov ND, Artem’ev AV, Brel VK. Reaction of (2-methoxyprop-2-yl)diphenylphosphine oxide with alkyl bromides. MENDELEEV COMMUNICATIONS 2018. [DOI: 10.1016/j.mencom.2018.05.020] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/16/2022]
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Li X, Chen T, Saga Y, Han LB. Iron-catalyzed cross coupling of P-H/C-O bonds: efficient synthesis of α-alkoxyphosphorus compounds. Dalton Trans 2016; 45:1877-80. [PMID: 26313255 DOI: 10.1039/c5dt02454d] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
An efficient P-C bond-formation through iron-catalyzed cross coupling of P-H/C-O bonds is developed for the first time. This reaction proceeds efficiently to produce the corresponding valuable α-alkoxyphosphorus compounds under mild conditions with a wide generality.
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Affiliation(s)
- Xue Li
- State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Chemistry and Chemical Engineering, Hunan University, Changsha 410082, China.
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Editorial to the Organophosphorus Chemistry Special Issue of Molecules (2012–2014). Molecules 2014. [PMCID: PMC6270956 DOI: 10.3390/molecules191015408] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022] Open
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