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Kaya HO, Albayrak G, Isbilir H, Kurul F, Baykan S, Hartati YW, Topkaya SN. Electrochemical profiling of natural furanocoumarins: DNA interaction dynamics of oxypeucedanin and prantschimgin. ADMET AND DMPK 2024; 12:319-334. [PMID: 38720926 PMCID: PMC11075164 DOI: 10.5599/admet.2199] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2023] [Revised: 02/28/2024] [Indexed: 05/12/2024] Open
Abstract
Background and purpose In this study, we present an electrochemical sensor for the detection of oxypeucedanin (Oxyp) and prantschimgin (Pra), two natural furanocoumarin derivatives. The determination of the effects of these molecules on DNA is important to be potential drug candidates. Our research focused on exploring the electrochemical behaviour of these compounds and their interaction with DNA. Experimental approach The electrochemical properties of Oxyp and Pra were systematically analyzed by evaluating their oxidation currents. Changes in the oxidation currents and peak potentials of guanine bases were monitored before and after interaction in the solution phase and at the electrode surface. Key results The limit of detection (LOD) and limit of quantitation (LOQ) for Oxyp were determined to be 1.3 and 4.3 μg/mL, respectively. For Pra, the LOD and LOQ were found to be 20 and 68 μg/mL, respectively. Stability studies demonstrated that the Oxyp solution retained its oxidation capacity for over a month, whereas the Pra solution retained its oxidation capacity for nearly 120 min. Our findings suggest that Oxyp interacts with dsDNA, potentially through electrostatic interactions, showing promise as a potential drug candidate targeting DNA. On the other hand, the interaction of Pra with dsDNA requires further exploration to fully understand its mode of action. Conclusion The electrochemical sensor developed in this study provides a reliable and efficient method for detecting and analysing the interaction of these natural compounds with dsDNA. Our research contributes to advancing the understanding of the interaction between natural furanocoumarins and dsDNA, laying the groundwork for the design and development of novel and effective DNA-targeted drugs.
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Affiliation(s)
- Hüseyin Oğuzhan Kaya
- Department of Analytical Chemistry, Faculty of Pharmacy, Izmir Katip Celebi University, Izmir, Türkiye
| | - Gokay Albayrak
- Department of Pharmaceutical Botany, Faculty of Pharmacy, Izmir Katip Celebi University, Izmir, Türkiye
| | - Hasan Isbilir
- Department of Nanoscience and Nanotechnology, Faculty of Science, Izmir Katip Celebi University, Izmir, Türkiye
| | - Fatma Kurul
- Izmir International Biomedicine and Genome Institute, Dokuz Eylul University, Izmir, Türkiye
| | - Sura Baykan
- Department of Pharmaceutical Botany, Faculty of Pharmacy, Ege University, Izmir, Türkiye
| | - Yeni Wahyuni Hartati
- Department of Chemistry, Faculty of Mathematics and Natural Sciences, Universitas Padjadjaran, Indonesia
| | - Seda Nur Topkaya
- Department of Analytical Chemistry, Faculty of Pharmacy, Izmir Katip Celebi University, Izmir, Türkiye
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Gökçimen SŞ, İpek Y, Behçet L, Demirtaş İ, Özen T. Isolation, characterization and evaluation of oxypeucedanin and osthol from local endemic Prangos aricakensis Behçet and Yapar root as antioxidant, enzyme inhibitory, antibacterial and DNA protection: molecular docking and DFT approaches. J Biomol Struct Dyn 2024:1-18. [PMID: 38214506 DOI: 10.1080/07391102.2024.2303387] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2023] [Accepted: 01/03/2024] [Indexed: 01/13/2024]
Abstract
Prangos species were previously used against many disorders due to their chemical component. Prangos aricakensis Behçet & Yapar is a newly discovered local endemic species in Turkey's eastern region, and there is no research on P. aricakensis in the literature. In this work, oxypeucedanin and osthol molecules have been isolated from the root part of P. aricakensis for the first time. Oxypeucedanin and osthol structures were elucidated by 1D and 2D NMR analysis. For the bioactivities determination, antioxidant (DPPH· and ABTS·+ scavenging), enzyme inhibition (AChE, BChE, tyrosinase, and urease), antibacterial and DNA protection activity studies were applied for both molecules and compared with standard drug molecules, after applying enzyme kinetic assays and in silico approaches to clarify the mechanism of action for both molecules with enzymes, using molecular docking and density functional theory (DFT). Oxypeucedanin (2.19 ± 0.38 µg/mL) and osthol (4.57 ± 1.28 µg/mL) exhibited better activity than standards in DPPH∙ scavenging activity. Osthol (11.76 ± 0.59 µg/mL) showed a better tyrosinase inhibition effect than kojic acid (12.82 ± 0.91 µg/mL), and oxypeucedanin (3.03 ± 0.01 µg/mL) showed better urease inhibition effect than thiourea (5.37 ± 1.86 µg/mL). Our results showed that the osthol molecule was an excellent skin protective agent while the oxypeucedanin molecule could be a remarkable antiulcer agent. Therefore, although this study is the first in its field, it remained in the in vitro and in silico stages and is thought to pave the way for in vivo studies in the future.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Serbay Şafak Gökçimen
- Faculty of Science, Department of Chemistry, Kurupelit Campus, Ondokuz Mayıs University, Samsun, Turkey
| | - Yaşar İpek
- Faculty of Science, Department of Chemistry, Uluyazı Campus, Çankırı Karatekin University, Çankırı, Turkey
| | - Lütfi Behçet
- Faculty of Arts and Sciences, Department of Molecular Biology and Genetics, Bingöl University, Bingöl, Turkey
| | - İbrahim Demirtaş
- Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Ondokuz Mayıs University, Samsun, Turkey
- Research Laboratories Application and Research Center (ALUM), Igdir University, Iğdır, Turkiye
| | - Tevfik Özen
- Faculty of Science, Department of Chemistry, Kurupelit Campus, Ondokuz Mayıs University, Samsun, Turkey
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Yu L, Qian X, Feng Y, Yin Y, Zhang XD, Wei Q, Wang L, Rong W, Li JJ, Li JX, Zhu Q. Investigation of preclinical pharmacokinetics of N-demethylsinomenine, a potential novel analgesic candidate, using an UPLC-MS/MS quantification method. Front Chem 2023; 11:1222560. [PMID: 37483270 PMCID: PMC10359479 DOI: 10.3389/fchem.2023.1222560] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2023] [Accepted: 06/27/2023] [Indexed: 07/25/2023] Open
Abstract
N- Demethylsinomenine (NDSM), the in vivo demethylated metabolite of sinomenine, has exhibited antinociceptive efficacy against various pain models and may become a novel drug candidate for pain management. However, no reported analytical method for quantification of N- Demethylsinomenine in a biological matrix is currently available, and the pharmacokinetic properties of N- Demethylsinomenine are unknown. In the present study, an ultra-high performance liquid chromatography with tandem mass spectrometry (UPLC-MS/MS) method for quantification of N- Demethylsinomenine in rat plasma was developed and utilized to examine the preclinical pharmacokinetic profiles of N- Demethylsinomenine. The liquid-liquid extraction using ethyl acetate as the extractant was selected to treat rat plasma samples. The mixture of 25% aqueous phase (0.35% acetic acid-10 mM ammonium acetate buffer) and 75% organic phase (acetonitrile) was chosen as the mobile phases flowing on a ZORBAX C18 column to perform the chromatographic separation. After a 6-min rapid elution, NDSM and its internal standard (IS), metronidazole, were separated successfully. The ion pairs of 316/239 and 172/128 were captured for detecting N- Demethylsinomenine and IS, respectively, using multiple reaction monitoring (MRM) under a positive electrospray ionization (ESI) mode in this mass spectrometry analysis. The standard curve met linear requirements within the concentration range from 3 to 1000 ng/mL, and the lower limit of quantification (LLOQ) was 3 ng/mL. The method was evaluated regarding precision, accuracy, recovery, matrix effect, and stability, and all the results met the criteria presented in the guidelines for validation of biological analysis method. Then the pharmacokinetic profiles of N- Demethylsinomenine in rat plasma were characterized using this validated UPLC-MS/MS method. N- Demethylsinomenine exhibited the feature of linear pharmacokinetics after intravenous (i.v.) or intragastric (i.g.) administration in rats. After i. v. bolus at three dosage levels (0.5, 1, and 2 mg/kg), N- Demethylsinomenine showed the profiles of rapid elimination with mean half-life (T1/2Z) of 1.55-1.73 h, and extensive tissue distribution with volume of distribution (VZ) of 5.62-8.07 L/kg. After i. g. administration at three dosage levels (10, 20, and 40 mg/kg), N- Demethylsinomenine showed the consistent peak time (Tmax) of 3 h and the mean absolute bioavailability of N- Demethylsinomenine was 30.46%. These pharmacokinetics findings will aid in future drug development decisions of N- Demethylsinomenine as a potential candidate for pain analgesia.
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Affiliation(s)
- Lulu Yu
- School of Pharmacy, Nantong University, Nantong, Jiangsu, China
| | - Xunjia Qian
- School of Pharmacy, Nantong University, Nantong, Jiangsu, China
| | - Yiheng Feng
- School of Pharmacy, Nantong University, Nantong, Jiangsu, China
| | - Yujian Yin
- School of Pharmacy, Nantong University, Nantong, Jiangsu, China
| | - Xiao-Dan Zhang
- School of Pharmacy, Nantong University, Nantong, Jiangsu, China
| | - Qianqian Wei
- School of Pharmacy, Nantong University, Nantong, Jiangsu, China
| | - Liyun Wang
- School of Pharmacy, Nantong University, Nantong, Jiangsu, China
| | - Weiwei Rong
- School of Pharmacy, Nantong University, Nantong, Jiangsu, China
- Provincial Key Laboratory of Inflammation and Molecular Drug Target, Nantong, Jiangsu, China
| | - Jie-Jia Li
- Center for Neural Developmental and Degenerative Research of Nantong University, Institute for Translational Neuroscience, Affiliated Hospital 2 of Nantong University, Nantong, Jiangsu, China
| | - Jun-Xu Li
- School of Pharmacy, Nantong University, Nantong, Jiangsu, China
| | - Qing Zhu
- School of Pharmacy, Nantong University, Nantong, Jiangsu, China
- Provincial Key Laboratory of Inflammation and Molecular Drug Target, Nantong, Jiangsu, China
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Enantioseparation and determination of oxypeucedanin and its application to a stereoselective analysis in Angelica Dahuricae Radix and pharmacokinetic study of rats. J Chromatogr B Analyt Technol Biomed Life Sci 2022; 1207:123355. [DOI: 10.1016/j.jchromb.2022.123355] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2022] [Revised: 06/20/2022] [Accepted: 06/26/2022] [Indexed: 11/18/2022]
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