1
|
Petrunin AA, Rabchinskii MK, Sysoev VV, Glukhova OE. Adaptive Peptide Molecule as the Promising Highly-Efficient Gas-Sensor Material: In Silico Study. SENSORS (BASEL, SWITZERLAND) 2023; 23:5780. [PMID: 37447630 PMCID: PMC10346805 DOI: 10.3390/s23135780] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/20/2023] [Revised: 06/12/2023] [Accepted: 06/17/2023] [Indexed: 07/15/2023]
Abstract
Gas sensors are currently employed in various applications in fields such as medicine, ecology, and food processing, and serve as monitoring tools for the protection of human health, safety, and quality of life. Herein, we discuss a promising direction in the research and development of gas sensors based on peptides-biomolecules with high selectivity and sensitivity to various gases. Thanks to the technique developed in this work, which uses a framework based on the density-functional tight-binding theory (DFTB), the most probable adsorption centers were identified and used to describe the interaction of some analyte molecules with peptides. The DFTB method revealed that the physical adsorption of acetone, ammonium, benzene, ethanol, hexane, methanol, toluene, and trinitrotoluene had a binding energy in the range from -0.28 eV to -1.46 eV. It was found that peptides may adapt to the approaching analyte by changing their volume up to a maximum value of approx. 13%, in order to confine electron clouds around the adsorbed molecule. Based on the results obtained, the prospects for using the proposed peptide configurations in gas sensor devices are good.
Collapse
Affiliation(s)
- Alexander A. Petrunin
- Institute of Physics, Saratov State University, Astrakhanskaya Street 83, 410012 Saratov, Russia;
| | | | - Victor V. Sysoev
- Department of Physics, Yuri Gagarin State Technical University of Saratov, Polytechnicheskaya Street 77, 410054 Saratov, Russia
| | - Olga E. Glukhova
- Institute of Physics, Saratov State University, Astrakhanskaya Street 83, 410012 Saratov, Russia;
- Laboratory of Biomedical Nanotechnology, I.M. Sechenov First Moscow State Medical University, Trubetskaya Street 8-2, 119991 Moscow, Russia
| |
Collapse
|
2
|
Rabchinskii MK, Shnitov VV, Brzhezinskaya M, Baidakova MV, Stolyarova DY, Ryzhkov SA, Saveliev SD, Shvidchenko AV, Nefedov DY, Antonenko AO, Pavlov SV, Kislenko VA, Kislenko SA, Brunkov PN. Manifesting Epoxide and Hydroxyl Groups in XPS Spectra and Valence Band of Graphene Derivatives. NANOMATERIALS (BASEL, SWITZERLAND) 2022; 13:nano13010023. [PMID: 36615934 PMCID: PMC9823558 DOI: 10.3390/nano13010023] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2022] [Revised: 12/13/2022] [Accepted: 12/19/2022] [Indexed: 06/12/2023]
Abstract
The derivatization of graphene to engineer its band structure is a subject of significant attention nowadays, extending the frames of graphene material applications in the fields of catalysis, sensing, and energy harvesting. Yet, the accurate identification of a certain group and its effect on graphene's electronic structure is an intricate question. Herein, we propose the advanced fingerprinting of the epoxide and hydroxyl groups on the graphene layers via core-level methods and reveal the modification of their valence band (VB) upon the introduction of these oxygen functionalities. The distinctive contribution of epoxide and hydroxyl groups to the C 1s X-ray photoelectron spectra was indicated experimentally, allowing the quantitative characterization of each group, not just their sum. The appearance of a set of localized states in graphene's VB related to the molecular orbitals of the introduced functionalities was signified both experimentally and theoretically. Applying the density functional theory calculations, the impact of the localized states corresponding to the molecular orbitals of the hydroxyl and epoxide groups was decomposed. Altogether, these findings unveiled the particular contribution of the epoxide and hydroxyl groups to the core-level spectra and band structure of graphene derivatives, advancing graphene functionalization as a tool to engineer its physical properties.
Collapse
Affiliation(s)
| | | | - Maria Brzhezinskaya
- Helmholtz-Zentrum Berlin für Materialien und Energie, Hahn-Meitner-Platz 1, 14109 Berlin, Germany
| | | | - Dina Yu. Stolyarova
- NRC “Kurchatov Institute”, Akademika Kurchatova pl. 1, 123182 Moscow, Russia
| | - Sergey A. Ryzhkov
- Ioffe Institute, Politekhnicheskaya St. 26, 194021 Saint Petersburg, Russia
| | | | | | - Denis Yu. Nefedov
- St. Petersburg State University, Universitetskaya nab. 7–9, 199034 St. Petersburg, Russia
| | | | - Sergey V. Pavlov
- Joint Institute for High Temperatures of RAS, Izhorskaya St. 13/2, 125412 Moscow, Russia
| | - Vitaliy A. Kislenko
- Joint Institute for High Temperatures of RAS, Izhorskaya St. 13/2, 125412 Moscow, Russia
- Skolkovo Institute of Science and Technology (Skoltech), Bolshoy Boulevard 30, bld. 1, 121205 Moscow, Russia
| | - Sergey A. Kislenko
- Joint Institute for High Temperatures of RAS, Izhorskaya St. 13/2, 125412 Moscow, Russia
| | - Pavel N. Brunkov
- Ioffe Institute, Politekhnicheskaya St. 26, 194021 Saint Petersburg, Russia
| |
Collapse
|