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Lamba A, Taneja V. Gut microbiota as a sensor of autoimmune response and treatment for rheumatoid arthritis. Immunol Rev 2024; 325:90-106. [PMID: 38867408 PMCID: PMC11338721 DOI: 10.1111/imr.13359] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/14/2024]
Abstract
Rheumatoid arthritis (RA) is considered a multifactorial condition where interaction between the genetic and environmental factors lead to immune dysregulation causing autoreactivity. While among the various genetic factors, HLA-DR4 and DQ8, have been reported to be the strongest risk factors, the role of various environmental factors has been unclear. Though events initiating autoreactivity remain unknown, a mucosal origin of RA has gained attention based on the recent observations with the gut dysbiosis in patients. However, causality of gut dysbiosis has been difficult to prove in humans. Mouse models, especially mice expressing RA-susceptible and -resistant HLA class II genes have helped unravel the complex interactions between genetic factors and gut microbiome. This review describes the interactions between HLA genes and gut dysbiosis in sex-biased preclinical autoreactivity and discusses the potential use of endogenous commensals as indicators of treatment efficacy as well as therapeutic tool to suppress pro-inflammatory response in rheumatoid arthritis.
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Affiliation(s)
| | - Veena Taneja
- Department of Immunology and Division of Rheumatology, Mayo Clinic College of Medicine, Rochester, MN, USA
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Pepoyan E, Marotta F, Manvelyan A, Galstyan A, Stepanyan L, Grigoryan H, Grigoryan L, Mikayelyan M, Balayan M, Harutyunyan N, Mirzabekyan S, Tsaturyan V, Torok T, Pepoyan A. Placebo-resistant gut bacteria: Akkermansia muciniphila spp. and Familial Mediterranean fever disease. Front Cell Infect Microbiol 2024; 14:1336752. [PMID: 38465231 PMCID: PMC10920240 DOI: 10.3389/fcimb.2024.1336752] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2023] [Accepted: 12/19/2023] [Indexed: 03/12/2024] Open
Abstract
Introduction Despite numerous investigations into the impact of drugs/probiotics on the gut microbiota composition in Familial Mediterranean Fever (FMF) patients, the question as to whether there exists a significant bacterial diversity(ies) independent of the placebo effect that can be reliably considered in clinical and nutritional trials remains unresolved. Methods This study represents the in augural analysis of the placebo's influence on the gut microbiota of both healthy individuals and FMF afflicted men, utilizing previously collected data from PhyloChip™ DNA microarray experiments. A total of 15 healthy and 15 FMF male volunteers, aged 18 to 50, participated in this partially randomized placebo trial, which is accessible through the GEO Series accession number GSE111835. Results and Discussion Key findings from current investigations include i. the anticipated divergence in gut bacteria resistance to placebo between healthy and FMF individuals, ii. the minor impact of placebo on gut bacterial diversities in healthy individuals, with Enterobacteriaceae diversities identified as placebo-resistant among "healthy" gut bacteria, and iii. the comprehensive influence of placebo on all bacterial phyla in the gut microbiome of FMF patients, extending to nearly all bacterial genera, except for the resilience of gut Akkermansia muciniphila spp. to placebo in FMF patients. This study underscores the susceptibility of Faecalibacterium, Blautia, and Clostridium genera to placebo. Consequently, this investigation holds significance for the proper design of placebo-controlled trials and establishes a foundation for further exploration of the gut-brain axis. Furthermore, it contributes valuable insights to discussions regarding proposals for probiotic therapies, particularly focusing on Faecalibacterium spp., Blautia spp., and Clostridium spp.
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Affiliation(s)
- Elya Pepoyan
- Food Safety and Biotechnology Department, Scientific Research Institute of Food Science and Biotechnology, Armenian National Agrarian University, Yerevan, Armenia
- International Association for Human and Animals Health Improvement, Yerevan, Armenia
- Faculty of Military Medicine, Yerevan State Medical University, Yerevan, Armenia
| | | | - Anahit Manvelyan
- Food Safety and Biotechnology Department, Scientific Research Institute of Food Science and Biotechnology, Armenian National Agrarian University, Yerevan, Armenia
- International Association for Human and Animals Health Improvement, Yerevan, Armenia
| | - Artak Galstyan
- Faculty of Military Medicine, Yerevan State Medical University, Yerevan, Armenia
| | - Lena Stepanyan
- Food Safety and Biotechnology Department, Scientific Research Institute of Food Science and Biotechnology, Armenian National Agrarian University, Yerevan, Armenia
- International Association for Human and Animals Health Improvement, Yerevan, Armenia
| | - Hasmik Grigoryan
- Food Safety and Biotechnology Department, Scientific Research Institute of Food Science and Biotechnology, Armenian National Agrarian University, Yerevan, Armenia
- International Association for Human and Animals Health Improvement, Yerevan, Armenia
| | - Liana Grigoryan
- Food Safety and Biotechnology Department, Scientific Research Institute of Food Science and Biotechnology, Armenian National Agrarian University, Yerevan, Armenia
| | - Mikayel Mikayelyan
- Food Safety and Biotechnology Department, Scientific Research Institute of Food Science and Biotechnology, Armenian National Agrarian University, Yerevan, Armenia
- International Association for Human and Animals Health Improvement, Yerevan, Armenia
| | - Marine Balayan
- Food Safety and Biotechnology Department, Scientific Research Institute of Food Science and Biotechnology, Armenian National Agrarian University, Yerevan, Armenia
- International Association for Human and Animals Health Improvement, Yerevan, Armenia
| | - Natalya Harutyunyan
- Food Safety and Biotechnology Department, Scientific Research Institute of Food Science and Biotechnology, Armenian National Agrarian University, Yerevan, Armenia
- International Association for Human and Animals Health Improvement, Yerevan, Armenia
| | - Susanna Mirzabekyan
- Food Safety and Biotechnology Department, Scientific Research Institute of Food Science and Biotechnology, Armenian National Agrarian University, Yerevan, Armenia
- International Association for Human and Animals Health Improvement, Yerevan, Armenia
| | - Vardan Tsaturyan
- International Association for Human and Animals Health Improvement, Yerevan, Armenia
- Faculty of Military Medicine, Yerevan State Medical University, Yerevan, Armenia
| | - Tamas Torok
- Lawrence Berkeley National Laboratory, Berkeley, CA, United States
| | - Astghik Pepoyan
- Food Safety and Biotechnology Department, Scientific Research Institute of Food Science and Biotechnology, Armenian National Agrarian University, Yerevan, Armenia
- International Association for Human and Animals Health Improvement, Yerevan, Armenia
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Mirzabekyan S, Harutyunyan N, Manvelyan A, Malkhasyan L, Balayan M, Miralimova S, Chikindas ML, Chistyakov V, Pepoyan A. Fish Probiotics: Cell Surface Properties of Fish Intestinal Lactobacilli and Escherichia coli. Microorganisms 2023; 11:microorganisms11030595. [PMID: 36985169 PMCID: PMC10052099 DOI: 10.3390/microorganisms11030595] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2022] [Revised: 02/19/2023] [Accepted: 02/20/2023] [Indexed: 03/03/2023] Open
Abstract
The properties of intestinal bacteria/probiotics, such as cell surface hydrophobicity (CSH), auto-aggregation, and biofilm formation ability, play an important role in shaping the relationship between the bacteria and the host. The current study aimed to investigate the cell surface properties of fish intestinal bacteria and probiotics. Microbial adhesion to hydrocarbons was tested according to Kos and coauthors. The aggregation abilities of the investigated strains were studied as described by Collado and coauthors. The ability of bacterial isolates to form a biofilm was determined by performing a qualitative analysis using crystal violet staining based on the attachment of bacteria to polystyrene. These studies prove that bacterial cell surface hydrophobicity (CSH) is associated with the growth medium, and the effect of the growth medium on CSH is species-specific and likely also strain-specific. Isolates of intestinal lactobacilli from fish (Salmo ischchan) differed from isolates of non-fish/shrimp origin in the relationship between auto-aggregation and biofilm formation. Average CSH levels for fish lactobacilli and E. coli might were lower compared to those of non-fish origin, which may affect the efficiency of non-fish probiotics use in fisheries due to the peculiarities of the hosts’ aquatic lifestyles.
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Affiliation(s)
- Susanna Mirzabekyan
- Division of Food Safety and Biotechnology, Armenian National Agrarian University, Yerevan 0009, Armenia
| | - Natalya Harutyunyan
- Division of Food Safety and Biotechnology, Armenian National Agrarian University, Yerevan 0009, Armenia
| | - Anahit Manvelyan
- Division of Food Safety and Biotechnology, Armenian National Agrarian University, Yerevan 0009, Armenia
| | - Lilit Malkhasyan
- Division of Food Safety and Biotechnology, Armenian National Agrarian University, Yerevan 0009, Armenia
| | - Marine Balayan
- Division of Food Safety and Biotechnology, Armenian National Agrarian University, Yerevan 0009, Armenia
| | - Shakhlo Miralimova
- Institute of Microbiology, Academy of Sciences of the Republic of Uzbekistan, Tashkent 100125, Uzbekistan
| | - Michael L. Chikindas
- Health Promoting Natural Laboratory, Rutgers State University, New Brunswick, NJ 08901, USA
- Center for Agrobiotechnology, Don State Technical University, 344002 Rostov-on-Don, Russia
- Department of General Hygiene, I.M. Sechenov First Moscow State Medical University, Bolshaya Pirogovskaya Str., 19/1, 119146 Moscow, Russia
| | - Vladimir Chistyakov
- Center for Agrobiotechnology, Don State Technical University, 344002 Rostov-on-Don, Russia
- D.I. Ivanovsky Academy of Biology and Biotechnology, Southern Federal University, Prosp. Stachky 194/1, 344090 Rostov-on-Don, Russia
| | - Astghik Pepoyan
- Division of Food Safety and Biotechnology, Armenian National Agrarian University, Yerevan 0009, Armenia
- The International Scientific-Educational Center of the National Academy of Sciences of the Republic of Armenia, Yerevan 0019, Armenia
- Correspondence: or or ; Tel.: +374-91-432490
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Pepoyan AZ, Manvelyan AM, Balayan MH, Harutyunyan NA, Tsaturyan VV, Batikyan H, Bren AB, Chistyakov V, Weeks R, Chikindas ML. Tetracycline resistance of Escherichia coli isolated from water, human stool, and fish gills from the Lake Sevan basin. Lett Appl Microbiol 2023; 76:7025953. [PMID: 36737425 DOI: 10.1093/lambio/ovad021] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2022] [Revised: 01/31/2023] [Accepted: 02/02/2023] [Indexed: 02/05/2023]
Abstract
The ecological state of Lake Sevan, the largest drinking water reservoir for the South Caucasus, formed under the influence of climatic and social changes. This study assesses the bacteriological quality of water in the rivers of the Lake Sevan basin and tetracycline-resistant bacteria isolated from fish and people living near the rivers of the Lake Sevan basin in Armenia in autumn 2019 and spring 2020. No differences have been shown for the tetracycline resistance of the investigated E. coli isolated from the human gut and the Masrik, Argichi, and Gavaraget Rivers. Horizontal gel electrophoresis revealed the same plasmid bands in most of the investigated E. coli with the same tetracycline resistance from the different sources of the Argichi River (obtained from people/fish/water sources where the fish were caught). The results also showed that most of the waters carried Edwardsiella spp., Erwinia spp., Morganella spp., and Proteus spp. in addition to E. coli; the coliform index did not exceed the standard level of 5 × 104 CFU mL-1 there. These findings highlight the importance of multidisciplinary studies of bacteria from "interacting" ecosystems, which might serve as a basis for the suggestion of microbial antibiotic resistance as another indicator of water pollution.
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Affiliation(s)
- A Z Pepoyan
- Division of Food Safety and Biotechnology, Armenian National Agrarian University, 74 Teryan St, Yerevan 0009, Armenia
- The International Scientific-Educational Center of the National Academy of Sciences of the Republic of Armenia, 24d Marshal Baghramyan Ave, Yerevan 0019, Armenia
| | - A M Manvelyan
- Division of Food Safety and Biotechnology, Armenian National Agrarian University, 74 Teryan St, Yerevan 0009, Armenia
| | - M H Balayan
- Division of Food Safety and Biotechnology, Armenian National Agrarian University, 74 Teryan St, Yerevan 0009, Armenia
| | - N A Harutyunyan
- Division of Food Safety and Biotechnology, Armenian National Agrarian University, 74 Teryan St, Yerevan 0009, Armenia
| | - V V Tsaturyan
- Faculty of Military Medicine, Yerevan State Medical University, 2 Koryun St, Yerevan 0025, Armenia
| | - H Batikyan
- Division of Food Safety and Biotechnology, Armenian National Agrarian University, 74 Teryan St, Yerevan 0009, Armenia
- Standard Dialog LLC, 49/4 Komitas Ave, Yerevan 0015, Armenia
| | - A B Bren
- Center for Agrobiotechnology, Don State Technical University, Gagarin Square 1, Rostov-on-Don, 344002, Russia
| | - V Chistyakov
- Center for Agrobiotechnology, Don State Technical University, Gagarin Square 1, Rostov-on-Don, 344002, Russia
| | - R Weeks
- Health Promoting Natural Laboratory, Rutgers State University, New Brunswick, NJ 08904, USA
| | - M L Chikindas
- Center for Agrobiotechnology, Don State Technical University, Gagarin Square 1, Rostov-on-Don, 344002, Russia
- Health Promoting Natural Laboratory, Rutgers State University, New Brunswick, NJ 08904, USA
- I.M. Sechenov First Moscow State Medical University, Bol'shaya Pirogovskaya Str., 19с1, Moscow 119146, Russia
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Tsaturyan V, Manvelyan A, Balayan M, Harutyunyan N, Pepoyan E, Torok T, Chikindas M, Pepoyan A. Host genetics and gut microbiota composition: Baseline gut microbiota composition as a possible prognostic factor for the severity of COVID-19 in patients with familial Mediterranean fever disease. Front Microbiol 2023; 14:1107485. [PMID: 37065143 PMCID: PMC10098164 DOI: 10.3389/fmicb.2023.1107485] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2022] [Accepted: 02/28/2023] [Indexed: 04/18/2023] Open
Abstract
Background It is known that the gut microbiome of a healthy person affects the process of COVID-19 after getting infected with SARS-CoV-2 virus. It is also believed that colchicine can alleviate the severity of COVID-19. Objective Current investigations aimed to evaluate the associations between the baseline gut microbiota composition of healthy and Familial Mediterranean fever (FMF) - carrier Armenian men populations, and the severity of the COVID-19 disease after their infection with the SARS-CoV-2. The study has a purpose of answering three core questions: i. Do the characteristics of gut microbiome of Armenians affect the course of COVID-19 severity? ii. How does the COVID-19 disease course on go for FMF patients who have been taking colchicine as a medication over the years after getting infected with SARS-CoV-2? iii. Is there an initial gut micribiota structure pattern for non-FMF and FMF patients in the cases when COVID-19 appears in mild form? Methods The gut microbiota composition in non-FMF and FMF patients before the first infection (mild and moderate course of COVID-19) was considered. COVID-19 was diagnosed by SARS-CoV-2 nucleic acid RT-PCR in nasopharyngeal swab and/or sputum. Results The number of patients with male FMF with mild COVID-19 was approximately two times higher than that of non-FMF male subjects with COVID-19. In addition, an association of COVID-19 disease severity with the baseline gut Prevotella, Clostridium hiranonis, Eubacterium biforme, Veillonellaceae, Coprococcus, and Blautia diversities in the non-FMF and FMF populations were revealed by us, which can be used as risk/prognostic factor for the severity of COVID-19.
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Affiliation(s)
- Vardan Tsaturyan
- Faculty of Military Medicine, Yerevan State Medical University, Yerevan, Armenia
- International Association for Human and Animals Health Improvement, Yerevan, Armenia
| | - Anahit Manvelyan
- International Association for Human and Animals Health Improvement, Yerevan, Armenia
- Division of Food Safety and Biotechnology, Armenian National Agrarian University, Yerevan, Armenia
| | - Marine Balayan
- International Association for Human and Animals Health Improvement, Yerevan, Armenia
- Division of Food Safety and Biotechnology, Armenian National Agrarian University, Yerevan, Armenia
| | - Natalya Harutyunyan
- International Association for Human and Animals Health Improvement, Yerevan, Armenia
- Division of Food Safety and Biotechnology, Armenian National Agrarian University, Yerevan, Armenia
| | - Elya Pepoyan
- International Association for Human and Animals Health Improvement, Yerevan, Armenia
- Division of Food Safety and Biotechnology, Armenian National Agrarian University, Yerevan, Armenia
| | - Tamas Torok
- Earth Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, United States
| | - Michael Chikindas
- Health Promoting Naturals Laboratory, Rutgers State University, New Brunswick, NJ, United States
| | - Astghik Pepoyan
- International Association for Human and Animals Health Improvement, Yerevan, Armenia
- Division of Food Safety and Biotechnology, Armenian National Agrarian University, Yerevan, Armenia
- The International Scientific-Educational Center of the National Academy of Sciences of the Republic of Armenia, Yerevan, Armenia
- *Correspondence: Astghik Pepoyan
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Jaiswal DK, Gawande SJ, Soumia PS, Krishna R, Vaishnav A, Ade AB. Biocontrol strategies: an eco-smart tool for integrated pest and diseases management. BMC Microbiol 2022; 22:324. [PMID: 36581846 PMCID: PMC9801620 DOI: 10.1186/s12866-022-02744-2] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2022] [Accepted: 12/15/2022] [Indexed: 12/31/2022] Open
Abstract
For the burgeoning global population, sustainable agriculture practices are crucial for accomplishing the zero-hunger goal. The agriculture sector is very concerned about the rise in insecticide resistance and the Modern Environmental Health Hazards (MEHHs) that are problems for public health due to on pesticide exposure and residues. Currently, farming practices are being developed based on microbial bio-stimulants, which have fewer negative effects and are more efficient than synthetic agro-chemicals. In this context, one of the most important approaches in sustainable agriculture is the use of biocontrol microbes that can suppress phytopathogens and insects. Simultaneously, it is critical to comprehend the role of these microbes in promoting growth and disease control, and their application as biofertilizers and biopesticides, the success of which in the field is currently inconsistent. Therefore, editorial is part of a special issue titled "Biocontrol Strategies: An Eco-smart Tool for Integrated Pest and Disease Management" which focuses on biocontrol approaches that can suppress the biotic stresses, alter plant defense mechanisms, and offer new eco-smart ways for controlling plant pathogens and insect pests under sustainable agriculture.
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Affiliation(s)
- Durgesh Kumar Jaiswal
- grid.32056.320000 0001 2190 9326Department of Botany, Savitribai Phule Pune University, Pune, Maharashtra India
| | | | - P. S. Soumia
- grid.464810.fICAR-Directorate of Onion and Garlic Research, Rajgurunagar, Pune India
| | - Ram Krishna
- grid.459616.90000 0004 1776 4760ICAR- Indian Institute of Vegetable Research, Varanasi, Uttar Pradesh India
| | - Anukool Vaishnav
- grid.7400.30000 0004 1937 0650University of Zurich, Reckenholzstrasse, Zurich, Switzerland
| | - Avinash Bapurao Ade
- grid.32056.320000 0001 2190 9326Department of Botany, Savitribai Phule Pune University, Pune, Maharashtra India
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Evaluation of Malondialdehyde Levels, Oxidative Stress and Host–Bacteria Interactions: Escherichia coli and Salmonella Derby. Cells 2022; 11:cells11192989. [PMID: 36230950 PMCID: PMC9564265 DOI: 10.3390/cells11192989] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2022] [Accepted: 09/23/2022] [Indexed: 11/16/2022] Open
Abstract
Either extracts, cell-free suspensions or bacterial suspensions are used to study bacterial lipid peroxidation processes. Along with gas chromatography-mass spectrometry, liquid chromatography-mass spectrometry, and several other strategies, the thiobarbituric acid test is used for the determination of malondialdehyde (MDA) as the basis for the commercial test kits and the colorimetric detection of lipid peroxidation. The aim of the current study was to evaluate lipid peroxidation processes levels in the suspensions, extracts and culture supernatants of Escherichia coli and Salmonella Derby strains. The dependence of the formation of thiobarbituric acid-reactive substances levels in the cell extracts, the suspensions and cell-free supernatants on bacterial species, and their concentration and growth phase were revealed. The effect of bacterial concentrations on MDA formation was also found to be more pronounced in bacterial suspensions than in extracts, probably due to the dynamics of MDA release into the intercellular space. This study highlights the possible importance of MDA determination in both cell-free suspensions and extracts, as well as in bacterial suspensions to elucidate the role of lipid peroxidation processes in bacterial physiology, bacteria–host interactions, as well as in host physiology.
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