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Benedetti Y, Callaghan CT, Ulbrichová I, Galanaki A, Kominos T, Abou Zeid F, Ibáñez-Álamo JD, Suhonen J, Díaz M, Markó G, Bussière R, Tryjanowski P, Bukas N, Mägi M, Leveau L, Pruscini F, Jerzak L, Ciebiera O, Jokimäki J, Kaisanlahti-Jokimäki ML, Møller AP, Morelli F. EVI and NDVI as proxies for multifaceted avian diversity in urban areas. ECOLOGICAL APPLICATIONS : A PUBLICATION OF THE ECOLOGICAL SOCIETY OF AMERICA 2023; 33:e2808. [PMID: 36691190 DOI: 10.1002/eap.2808] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/17/2022] [Revised: 11/15/2022] [Accepted: 11/22/2022] [Indexed: 06/17/2023]
Abstract
Most ecological studies use remote sensing to analyze broad-scale biodiversity patterns, focusing mainly on taxonomic diversity in natural landscapes. One of the most important effects of high levels of urbanization is species loss (i.e., biotic homogenization). Therefore, cost-effective and more efficient methods to monitor biological communities' distribution are essential. This study explores whether the Enhanced Vegetation Index (EVI) and the Normalized Difference Vegetation Index (NDVI) can predict multifaceted avian diversity, urban tolerance, and specialization in urban landscapes. We sampled bird communities among 15 European cities and extracted Landsat 30-meter resolution EVI and NDVI values of the pixels within a 50-m buffer of bird sample points using Google Earth Engine (32-day Landsat 8 Collection Tier 1). Mixed models were used to find the best associations of EVI and NDVI, predicting multiple avian diversity facets: Taxonomic diversity, functional diversity, phylogenetic diversity, specialization levels, and urban tolerance. A total of 113 bird species across 15 cities from 10 different European countries were detected. EVI mean was the best predictor for foraging substrate specialization. NDVI mean was the best predictor for most avian diversity facets: taxonomic diversity, functional richness and evenness, phylogenetic diversity, phylogenetic species variability, community evolutionary distinctiveness, urban tolerance, diet foraging behavior, and habitat richness specialists. Finally, EVI and NDVI standard deviation were not the best predictors for any avian diversity facets studied. Our findings expand previous knowledge about EVI and NDVI as surrogates of avian diversity at a continental scale. Considering the European Commission's proposal for a Nature Restoration Law calling for expanding green urban space areas by 2050, we propose NDVI as a proxy of multiple facets of avian diversity to efficiently monitor bird community responses to land use changes in the cities.
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Affiliation(s)
- Yanina Benedetti
- Faculty of Environmental Sciences, Czech University of Life Sciences Prague, Prague, Czech Republic
| | - Corey T Callaghan
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
- Centre for Ecosystem Science, School of Biological, Earth and Environmental Sciences, UNSW Sydney, Sydney, New South Wales, Australia
- Department of Wildlife Ecology and Conservation, Fort Lauderdale Research and Education Center, University of Florida, Davie, Florida, USA
| | - Iva Ulbrichová
- Faculty of Forestry and Wood Sciences, Department of Forest Ecology, Czech University of Life Sciences Prague, Prague, Czech Republic
| | - Antonia Galanaki
- Department of Zoology, School of Biology, Aristotle University of Thessaloniki, Thessaloniki, Greece
| | - Theodoros Kominos
- Department of Zoology, School of Biology, Aristotle University of Thessaloniki, Thessaloniki, Greece
| | - Farah Abou Zeid
- Faculty of Environmental Sciences, Czech University of Life Sciences Prague, Prague, Czech Republic
| | | | - Jukka Suhonen
- Department of Biology, University of Turku, Turku, Finland
| | - Mario Díaz
- Department of Biogeography and Global Change, Museo Nacional de Ciencias Naturales (BGC-MNCN-CSIC), Madrid, Spain
| | - Gábor Markó
- Department of Plant Pathology, Institute of Plant Protection, Hungarian University of Agriculture and Life Sciences, Budapest, Hungary
| | | | - Piotr Tryjanowski
- Institute of Zoology, Poznań University of Life Sciences, Poznań, Poland
| | | | - Marko Mägi
- Department of Zoology, Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Lucas Leveau
- Departamento de Ecología, Genética y Evolución, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires-IEGEBA (CONICET-UBA), Ciudad Universitaria, Buenos Aires, Argentina
| | | | - Leszek Jerzak
- Institute of Biological Sciences, University of Zielona Góra, Zielona Góra, Poland
| | - Olaf Ciebiera
- Institute of Biological Sciences, University of Zielona Góra, Zielona Góra, Poland
| | - Jukka Jokimäki
- Nature Inventory and EIA-services, Arctic Centre, University of Lapland, Rovaniemi, Finland
| | | | - Anders Pape Møller
- Ecologie Systématique Evolution, Université Paris-Sud, CNRS, AgroParisTech, Université Paris-Saclay, Orsay Cedex, France
| | - Federico Morelli
- Faculty of Environmental Sciences, Czech University of Life Sciences Prague, Prague, Czech Republic
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Gradient Boosting Estimation of the Leaf Area Index of Apple Orchards in UAV Remote Sensing. REMOTE SENSING 2021. [DOI: 10.3390/rs13163263] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
The leaf area index (LAI) is a key parameter for describing the canopy structure of apple trees. This index is also employed in evaluating the amount of pesticide sprayed per unit volume of apple trees. Hence, numerous manual and automatic methods have been explored for LAI estimation. In this work, the leaf area indices for different types of apple trees are obtained in terms of multispectral remote-sensing data collected with an unmanned aerial vehicle (UAV), along with simultaneous measurements of apple orchards. The proposed approach was tested on apple trees of the “Fuji”, “Golden Delicious”, and “Ruixue” types, which were planted in the Apple Experimental Station of the Northwest Agriculture and Forestry University in Baishui County, Shaanxi Province, China. Five vegetation indices of strong correlation with the apple leaf area index were selected and used to train models of support vector regression (SVR) and gradient-boosting decision trees (GBDT) for predicting the leaf area index of apple trees. The best model was selected based on the metrics of the coefficient of determination (R2) and the root-mean-square error (RMSE). The experimental results showed that the gradient-boosting decision tree model achieved the best performance with an R2 of 0.846, an RMSE of 0.356, and a spatial efficiency (SPAEF) of 0.57. This demonstrates the feasibility of our approach for fast and accurate remote-sensing-based estimation of the leaf area index of apple trees.
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Comparative Analysis of Landsat-8, Sentinel-2, and GF-1 Data for Retrieving Soil Moisture over Wheat Farmlands. REMOTE SENSING 2020. [DOI: 10.3390/rs12172708] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Soil moisture is an important variable in ecological, hydrological, and meteorological studies. An effective method for improving the accuracy of soil moisture retrieval is the mutual supplementation of multi-source data. The sensor configuration and band settings of different optical sensors lead to differences in band reflectivity in the inter-data, further resulting in the differences between vegetation indices. The combination of synthetic aperture radar (SAR) data with multi-source optical data has been widely used for soil moisture retrieval. However, the influence of vegetation indices derived from different sources of optical data on retrieval accuracy has not been comparatively analyzed thus far. Therefore, the suitability of vegetation parameters derived from different sources of optical data for accurate soil moisture retrieval requires further investigation. In this study, vegetation indices derived from GF-1, Landsat-8, and Sentinel-2 were compared. Based on Sentinel-1 SAR and three optical data, combined with the water cloud model (WCM) and the advanced integral equation model (AIEM), the accuracy of soil moisture retrieval was investigated. The results indicate that, Sentinel-2 data were more sensitive to vegetation characteristics and had a stronger capability for vegetation signal detection. The ranking of normalized difference vegetation index (NDVI) values from the three sensors was as follows: the largest was in Sentinel-2, followed by Landsat-8, and the value of GF-1 was the smallest. The normalized difference water index (NDWI) value of Landsat-8 was larger than that of Sentinel-2. With reference to the relative components in the WCM model, the contribution of vegetation scattering exceeded that of soil scattering within a vegetation index range of approximately 0.55–0.6 in NDVI-based models and all ranges in NDWI1-based models. The threshold value of NDWI2 for calculating vegetation water content (VWC) was approximately an NDVI value of 0.4–0.55. In the soil moisture retrieval, Sentinel-2 data achieved higher accuracy than data from the other sources and thus was more suitable for the study for combination with SAR in soil moisture retrieval. Furthermore, compared with NDVI, higher accuracy of soil moisture could be retrieved by using NDWI1 (R2 = 0.623, RMSE = 4.73%). This study provides a reference for the selection of optical data for combination with SAR in soil moisture retrieval.
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A Modified KNN Method for Mapping the Leaf Area Index in Arid and Semi-Arid Areas of China. REMOTE SENSING 2020. [DOI: 10.3390/rs12111884] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
As an important vegetation canopy parameter, the leaf area index (LAI) plays a critical role in forest growth modeling and vegetation health assessment. Estimating LAI is helpful for understanding vegetation growth and global ecological processes. Machine learning methods such as k-nearest neighbors (kNN) and random forest (RF) with remote sensing images have been widely used for mapping LAI. However, the accuracy of mapping LAI in arid and semi-arid areas using these methods is limited due to remote and large areas, the high cost of collecting field data, and the great spatial variability of the vegetation canopy. Here, a novel and modified kNN method was presented for mapping LAI in arid and semi-arid areas of China using Sentinel-2 and Landsat 8 images with field data collected in Ganzhou and Kangbao of China. The modified kNN was developed by integrating the traditional kNN estimation and RF classification. The results were compared with those from kNN and RF regression alone using three sets of input predictors: (i) spectral reflectance bands (input 1); (ii) vegetation indices (input 2); and (iii) a combination of spectral reflectance bands and vegetation indices (input 3). Our analysis showed that in Ganzhou, the red-edge bands of the Sentinel-2 image had a high correlation with LAI. Using the red-edge band-derived vegetation indices increased the accuracy of mapping LAI compared with using other spectral variables. Among the three sets of input predictors, input 3 resulted in the highest prediction accuracy. Based on the combination, the values of RMSE obtained by the traditional kNN, RF, and modified kNN were 0.526, 0.523, and 0.372, respectively, and the modified kNN significantly improved the accuracy of LAI prediction by 29.3% and 28.9% compared with the kNN and RF alone, respectively. A similar improvement was achieved for input 1 and input 2. In Kangbao, the improvement of the prediction accuracy obtained by the modified kNN was 31.4% compared with both the kNN and RF. Therefore, this study implied that the modified kNN provided the potential to improve the accuracy of mapping LAI in arid and semi-arid regions using the images.
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Improving Field-Scale Wheat LAI Retrieval Based on UAV Remote-Sensing Observations and Optimized VI-LUTs. REMOTE SENSING 2019. [DOI: 10.3390/rs11202456] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
Leaf area index (LAI) is a key biophysical parameter for monitoring crop growth status, predicting crop yield, and quantifying crop variability in agronomic applications. Mapping the LAI at the field scale using multispectral cameras onboard unmanned aerial vehicles (UAVs) is a promising precision-agriculture application with specific requirements: The LAI retrieval method should be (1) robust so that crop LAI can be estimated with similar accuracy and (2) easy to use so that it can be applied to the adjustment of field management practices. In this study, three UAV remote-sensing missions (UAVs with Micasense RedEdge-M and Cubert S185 cameras) were carried out over six experimental plots from 2018 to 2019 to investigate the performance of reflectance-based lookup tables (LUTs) and vegetation index (VI)-based LUTs generated from the PROSAIL model for wheat LAI retrieval. The effects of the central wavelengths and bandwidths for the VI calculations on the LAI retrieval were further examined. We found that the VI-LUT strategy was more robust and accurate than the reflectance-LUT strategy. The differences in the LAI retrieval accuracy among the four VI-LUTs were small, although the improved modified chlorophyll absorption ratio index-lookup table (MCARI2-LUT) and normalized difference vegetation index-lookup table (NDVI-LUT) performed slightly better. We also found that both of the central wavelengths and bandwidths of the VIs had effects on the LAI retrieval. The VI-LUTs with optimized central wavelengths (red = 612 nm, near-infrared (NIR) = 756 nm) and narrow bandwidths (~4 nm) improved the wheat LAI retrieval accuracy (R2 ≥ 0.75). The results of this study provide an alternative method for retrieving crop LAI, which is robust and easy use for precision-agriculture applications and may be helpful for designing UAV multispectral cameras for agricultural monitoring.
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Comparison of Landsat-8 and Sentinel-2 Data for Estimation of Leaf Area Index in Temperate Forests. REMOTE SENSING 2019. [DOI: 10.3390/rs11101160] [Citation(s) in RCA: 37] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
With the launch of the Sentinel-2 satellites, a European capacity has been created to ensure continuity of Landsat and SPOT observations. In contrast to previous sensors, Sentinel-2′s multispectral imager (MSI) incorporates three additional spectral bands in the red-edge (RE) region, which are expected to improve the mapping of vegetation traits. The objective of this study was to compare Sentinel-2 MSI and Landsat-8 OLI data for the estimation of leaf area index (LAI) in temperate, deciduous broadleaf forests. We used hemispherical photography to estimate effective LAI at 36 field plots. We then built and compared simple and multiple linear regression models between field-based LAI and spectral bands and vegetation indices derived from Landsat-8 and Sentinel-2, respectively. Our main findings are that Sentinel-2 predicts LAI with comparable accuracy to Landsat-8. The best Landsat-8 models predicted LAI with a root-mean-square error (RMSE) of 0.877, and the best Sentinel-2 model achieved an RMSE of 0.879. In addition, Sentinel-2′s RE bands and RE-based indices did not improve LAI prediction. Thirdly, LAI models showed a high sensitivity to understory vegetation when tree cover was sparse. According to our findings, Sentinel-2 is capable of delivering data continuity at high temporal resolution.
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The Laser Vegetation Detecting Sensor: A Full Waveform, Large-Footprint, Airborne Laser Altimeter for Monitoring Forest Resources. SENSORS 2019; 19:s19071699. [PMID: 30974733 PMCID: PMC6479772 DOI: 10.3390/s19071699] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/26/2019] [Revised: 04/04/2019] [Accepted: 04/08/2019] [Indexed: 11/16/2022]
Abstract
The use of satellite-borne large-footprint LiDAR (light detection and ranging) systems allows for the acquisition of forest monitoring data. This paper mainly describes the design, use, operating principles, installation and data properties of the new Laser Vegetation Detecting Sensor (LVDS), a LiDAR system designed and developed at the Academy of Forest Inventory and Planning (AFIP) and the Beijing Institute of Telemetry (BIT). Data from LVDS were used to calculate the mean height of forest trees on sample plots using data collected in the Hunan province of China. The results show that the full waveform data obtained by LVDS has the ability to accurately characterize forest height. The mean absolute percentage error of mean forest height per plot in flat areas was 6.8%, with a mean absolute deviation of 0.78 m. The airborne LVDS system provides prototype data sets and a platform for instrument proof-of-concept studies for China’s Terrestrial Ecosystem Carbon Monitoring (TECM) mission, which is an Earth remote sensing satellite due for launch in 2020. The information produced by LVDS allows for forest structure studies with high accuracy and coverage of large areas.
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