Mapping Maize Water Stress Based on UAV Multispectral Remote Sensing

In-Season Cotton Yield Prediction with Scale-Aware Convolutional Neural Network Models and Unmanned Aerial Vehicle RGB Imagery

In the pursuit of sustainable agriculture, efficient water management remains crucial, with growers relying on advanced techniques for informed decision-making. Cotton yield prediction, a critical aspect of agricultural planning, benefits from cutting-edge technologies. However, traditional methods often struggle to capture the nuanced complexities of crop health and growth. This study introduces a novel approach to cotton yield prediction, leveraging the synergy between Unmanned Aerial Vehicles (UAVs) and scale-aware convolutional neural networks (CNNs). The proposed model seeks to harness the spatiotemporal dynamics inherent in high-resolution UAV imagery to improve the accuracy of the cotton yield prediction. The CNN component adeptly extracts spatial features from UAV-derived imagery, capturing intricate details related to crop health and growth, modeling temporal dependencies, and facilitating the recognition of trends and patterns over time. Research experiments were carried out in a cotton field at the USDA-ARS Cropping Systems Research Laboratory (CSRL) in Lubbock, Texas, with three replications evaluating four irrigation treatments (rainfed, full irrigation, percent deficit of full irrigation, and time delay of full irrigation) on cotton yield. The prediction revealed that the proposed CNN regression models outperformed conventional CNN models, such as AlexNet, CNN-3D, CNN-LSTM, ResNet. The proposed CNN model showed state-of-art performance at different image scales, with the R2 exceeding 0.9. At the cotton row level, the mean absolute error (MAE) and mean absolute percentage error (MAPE) were 3.08 pounds per row and 7.76%, respectively. At the cotton grid level, the MAE and MAPE were 0.05 pounds and 10%, respectively. This shows the proposed model's adaptability to the dynamic interplay between spatial and temporal factors that affect cotton yield. The authors conclude that integrating UAV-derived imagery and CNN regression models is a potent strategy for advancing precision agriculture, providing growers with a powerful tool to optimize cultivation practices and enhance overall cotton productivity.

Spatiotemporal Winter Wheat Water Status Assessment Improvement Using a Water Deficit Index Derived from an Unmanned Aerial System in the North China Plain

Agricultural droughts cause a great reduction in winter wheat productivity; therefore, timely and precise irrigation recommendations are needed to alleviate the impact. This study aims to assess drought stress in winter wheat with the use of an unmanned aerial system (UAS) with multispectral and thermal sensors. High-resolution Water Deficit Index (WDI) maps were derived to assess crop drought stress and evaluate winter wheat actual evapotranspiration rate (ET_a). However, the estimation of WDI needs to be improved by using more appropriate vegetation indices as a proximate of the fraction of vegetation cover. The experiments involved six irrigation levels of winter wheat in the harvest years 2019 and 2020 at Luancheng, North China Plain on seasonal and diurnal timescales. Additionally, WDI derived from several vegetation indices (VIs) were compared: near-infrared-, red edge-, and RGB-based. The WDIs derived from different VIs were highly correlated with each other and had similar performances. The WDI had a consistently high correlation to stomatal conductance during the whole season (R² between 0.63-0.99) and the correlation was the highest in the middle of the growing season. On the contrary, the correlation between WDI and leaf water potential increased as the season progressed with R² up to 0.99. Additionally, WDI and ET_a had a strong connection to soil water status with R² up to 0.93 to the fraction of transpirable soil water and 0.94 to the soil water change at 2 m depth at the hourly rate. The results indicated that WDI derived from multispectral and thermal sensors was a reliable factor in assessing the water status of the crop for irrigation scheduling.

Estimation of tomato water status with photochemical reflectance index and machine learning: Assessment from proximal sensors and UAV imagery

Tracking plant water status is a critical step towards the adaptive precision irrigation management of processing tomatoes, one of the most important specialty crops in California. The photochemical reflectance index (PRI) from proximal sensors and the high-resolution unmanned aerial vehicle (UAV) imagery provide an opportunity to monitor the crop water status efficiently. Based on data from an experimental tomato field with intensive aerial and plant-based measurements, we developed random forest machine learning regression models to estimate tomato stem water potential (ψ _stem), (using observations from proximal sensors and 12-band UAV imagery, respectively, along with weather data. The proximal sensor-based model estimation agreed well with the plant ψ _stem with R ² of 0.74 and mean absolute error (MAE) of 0.63 bars. The model included PRI, normalized difference vegetation index, vapor pressure deficit, and air temperature and tracked well with the seasonal dynamics of ψ _stem across different plots. A separate model, built with multiple vegetation indices (VIs) from UAV imagery and weather variables, had an R ² of 0.81 and MAE of 0.67 bars. The plant-level ψ _stem maps generated from UAV imagery closely represented the water status differences of plots under different irrigation treatments and also tracked well the temporal change among flights. PRI was found to be the most important VI in both the proximal sensor- and the UAV-based models, providing critical information on tomato plant water status. This study demonstrated that machine learning models can accurately estimate the water status by integrating PRI, other VIs, and weather data, and thus facilitate data-driven irrigation management for processing tomatoes.

Spectral Library of Maize Leaves under Nitrogen Deficiency Stress

Maize crops occupy an important place in world food security. However, different conditions, such as abiotic stress factors, can affect the productivity of these crops, requiring technologies that facilitate their monitoring. One such technology is spectroscopy, which measures the energy reflected and emitted by a surface along the electromagnetic spectrum. Spectral data can help to identify abiotic factors in plants, since the spectral signature of vegetation has discriminating features associated with the plant’s health condition. This paper introduces a spectral library captured on maize crops under different nitrogen-deficiency stress levels. The datasets will be of potential interest to researchers, ecologists, and agronomists seeking to understand the spectral features of maize under nitrogen-deficiency stress. The library includes three datasets captured at different growth stages of 10 tropical maize genotypes. The spectral signatures collected were in the visible to near-infrared range (450–950 nm). The data were pre-processed to reduce noise and anomalous signatures. This study presents a spectral library of the effects of nitrogen deficiency on ten maize genotypes, highlighting that some genotypes show tolerance to this type of stress at different phenological stages. Most of the evaluated genotypes showed discriminate spectral features 4–6 weeks after sowing. Higher reflectance was obtained at approximately 550 nm for the lowest nitrogen fertilization treatments. Finally, we describe some potential applications of the spectral library of maize leaves under nitrogen-deficiency stress.

Effectiveness of vegetation indices and UAV-multispectral imageries in assessing the response of hybrid maize (Zea mays L.) to water deficit stress under field environment

Unmanned aerial vehicles (UAVs) equipped with multi-sensors are one of the most innovative technologies for measuring plant health and predicting final yield in field conditions, especially in the water deficit situation in rain-deprived regions. The objective of this investigation was to evaluate the individual plant and canopy-level measurements using UAV imageries in three different genotypes, Suwan4452 (drought-tolerant), Pac339, and S7328 (drought-sensitive) of maize (Zea mays L.) at vegetative and reproductive stages under WW (well-watered) and WD (water deficit) conditions. At the vegetative stage, only CWSI (crop water stress index) of Pac339 and S7328 under WD increased significantly by 1.86- and 1.69-fold over WW, whereas the vegetation indices (EVI2 (Enhanced Vegetation Index 2), OSAVI (Optimized Soil-Adjusted Vegetation Index), GNDVI (Green Normalized Difference Vegetation Index), NDRE (Normalized Difference Red Edge Index), and NDVI (Normalized Difference Vegetation Index)) derived from UAV multi-sensors did not vary. At the reproductive stage, CWSI in drought-sensitive genotype (S7328) under WD increased by 1.92-fold over WW. All the vegetation indices (EVI2, OSAVI, GNDVI, NDRE, and NDVI) of Pac339 and S7328 under WD decreased when compared with those of Suwan4452. NDVI derived from GreenSeeker^® handheld and NDVI from UAV data was closely related (R² = 0.5924). An increase in leaf temperature (T_leaf) and reduction in NDVI of WD stressed maize plants was observed (R² = 0.5829) leading to yield loss (R² = 0.5198). In summary, a close correlation was observed between the physiological data of individual plants and vegetation indices of canopy level (collected using a UAV platform) in drought-sensitive genotypes of maize crops under WD conditions, thus indicating its effectiveness in the classification of drought-tolerant genotypes.

Using Aerial Thermal Imagery to Evaluate Water Status in Vitis vinifera cv. Loureiro

The crop water stress index (CWSI) is a widely used analytical tool based on portable thermography. This method can be useful in replacing the traditional stem water potential method obtained with a Scholander chamber (PMS Model 600) because the latter is not feasible for large-scale studies due to the time involved and the fact that it is invasive and can cause damage to the plant. The present work had three objectives: (i) to understand if CWSI estimated using an aerial sensor can estimate the water status of the plant; (ii) to compare CWSI from aerial-thermographic and portable thermal cameras with stem water potential; (iii) to estimate the capacity of an unmanned aerial vehicle (UAV) to calculate and spatialize CWSI. Monitoring of CWSI (CWSI_P) using a portable device was performed directly in the canopy, by measuring reference temperatures (T_dry, T_wet, and canopy temperature (T_c)). Aerial CWSI calculation was performed using two models: (i) a simplified CWSI model (CWSI_S), where the T_dry and T_wet were estimated as the average of 1% of the extreme temperature, and (ii) an air temperature model (CWSI_Tair) where air temperatures (T_air + 7 °C) were recorded as T_dry and in the T_wet, considering the average of the lowest 33% of histogram values. In these two models, the T_c value corresponded to the temperature value in each pixel of the aerial thermal image. The results show that it was possible to estimate CWSI by calculating canopy temperatures and spatializing CWSI using aerial thermography. Of the two models, it was found that for CWSI_Tair, CWSI_S (R² = 0.55) evaluated crop water stress better than stem water potential. The CWSI_S had good correlation compared with the portable sensor (R² = 0.58), and its application in field measurements is possible.

Estimation of Maize Foliar Temperature and Stomatal Conductance as Indicators of Water Stress Based on Optical and Thermal Imagery Acquired Using an Unmanned Aerial Vehicle (UAV) Platform

Climatic variability and extreme weather events impact agricultural production, especially in sub-Saharan smallholder cropping systems, which are commonly rainfed. Hence, the development of early warning systems regarding moisture availability can facilitate planning, mitigate losses and optimise yields through moisture augmentation. Precision agricultural practices, facilitated by unmanned aerial vehicles (UAVs) with very high-resolution cameras, are useful for monitoring farm-scale dynamics at near-real-time and have become an important agricultural management tool. Considering these developments, we evaluated the utility of optical and thermal infrared UAV imagery, in combination with a random forest machine-learning algorithm, to estimate the maize foliar temperature and stomatal conductance as indicators of potential crop water stress and moisture content over the entire phenological cycle. The results illustrated that the thermal infrared waveband was the most influential variable during vegetative growth stages, whereas the red-edge and near-infrared derived vegetation indices were fundamental during the reproductive growth stages for both temperature and stomatal conductance. The results also suggested mild water stress during vegetative growth stages and after a hailstorm during the mid-reproductive stage. Furthermore, the random forest model optimally estimated the maize crop temperature and stomatal conductance over the various phenological stages. Specifically, maize foliar temperature was best predicted during the mid-vegetative growth stage and stomatal conductance was best predicted during the early reproductive growth stage. Resultant maps of the modelled maize growth stages captured the spatial heterogeneity of maize foliar temperature and stomatal conductance within the maize field. Overall, the findings of the study demonstrated that the use of UAV optical and thermal imagery, in concert with prediction-based machine learning, is a useful tool, available to smallholder farmers to help them make informed management decisions that include the optimal implementation of irrigation schedules.

Application of UAV Remote Sensing in Monitoring Water Use Efficiency and Biomass of Cotton Plants Adjacent to Shelterbelt

Tree shelterbelts are crucial for maintaining the ecological environment of oasis, but they may also compete for soil water with adjacent crops, affecting crop yields. To evaluate the impacts of the shelterbelt on water use efficiency (WUE) and normalized water productivity (WP) of adjacent cotton plants, the biomass (B) and WUE of cotton with different distances from the shelterbelt (0.1H, 0.5H, 1H, 2H, and 3H; average tree height = 15 m [H]) were estimated based on unmanned aerial vehicle (UAV) remote sensing data combined with the FAO crop water response model AquaCrop. Besides, the accuracy and universality of the estimation method were also evaluated. The results showed that the method based on UAV remote sensing data and AquaCrop can accurately estimate the impact range and intensity of shelterbelt on WUE, water consumption, and B of adjacent cotton plants. Fierce water competition between shelterbelt and cotton was detected within 0.1H-1H, and the competitiveness of the shelterbelt was weaker in the plots >1H than in the 0.1H-1H. The B, actual evapotranspiration (T_c), and WUE of cotton at 0.1H decreased by 59.3, 48.8, and 23.6%, respectively, compared with those at 3H, but the cotton plants at 2H and 3H were completely unaffected by the shelterbelt. Besides, the B estimated based on WP (root mean square error [RMSE] = 108 g/m², d = 0.89) was more accurate than that estimated based on WUE (RMSE = 118 g/m², d = 0.85). This study clarifies the inter-species competition for soil water between crops and shelterbelts under drip irrigation in oases in China.

A novel ground truth multispectral image dataset with weight, anthocyanins, and Brix index measures of grape berries tested for its utility in machine learning pipelines

Background

The combination of computer vision devices such as multispectral cameras coupled with artificial intelligence has provided a major leap forward in image-based analysis of biological processes. Supervised artificial intelligence algorithms require large ground truth image datasets for model training, which allows to validate or refute research hypotheses and to carry out comparisons between models. However, public datasets of images are scarce and ground truth images are surprisingly few considering the numbers required for training algorithms.

Results

We created a dataset of 1,283 multidimensional arrays, using berries from five different grape varieties. Each array has 37 images of wavelengths between 488.38 and 952.76 nm obtained from single berries. Coupled to each multispectral image, we added a dataset with measurements including, weight, anthocyanin content, and Brix index for each independent grape. Thus, the images have paired measures, creating a ground truth dataset. We tested the dataset with 2 neural network algorithms: multilayer perceptron (MLP) and 3-dimensional convolutional neural network (3D-CNN). A perfect (100% accuracy) classification model was fit with either the MLP or 3D-CNN algorithms.

Conclusions

This is the first public dataset of grape ground truth multispectral images. Associated with each multispectral image, there are measures of the weight, anthocyanins, and Brix index. The dataset should be useful to develop deep learning algorithms for classification, dimensionality reduction, regression, and prediction analysis.

A Comprehensive Review of High Throughput Phenotyping and Machine Learning for Plant Stress Phenotyping

During the last decade, there has been rapid adoption of ground and aerial platforms with multiple sensors for phenotyping various biotic and abiotic stresses throughout the developmental stages of the crop plant. High throughput phenotyping (HTP) involves the application of these tools to phenotype the plants and can vary from ground-based imaging to aerial phenotyping to remote sensing. Adoption of these HTP tools has tried to reduce the phenotyping bottleneck in breeding programs and help to increase the pace of genetic gain. More specifically, several root phenotyping tools are discussed to study the plant's hidden half and an area long neglected. However, the use of these HTP technologies produces big data sets that impede the inference from those datasets. Machine learning and deep learning provide an alternative opportunity for the extraction of useful information for making conclusions. These are interdisciplinary approaches for data analysis using probability, statistics, classification, regression, decision theory, data visualization, and neural networks to relate information extracted with the phenotypes obtained. These techniques use feature extraction, identification, classification, and prediction criteria to identify pertinent data for use in plant breeding and pathology activities. This review focuses on the recent findings where machine learning and deep learning approaches have been used for plant stress phenotyping with data being collected using various HTP platforms. We have provided a comprehensive overview of different machine learning and deep learning tools available with their potential advantages and pitfalls. Overall, this review provides an avenue for studying various HTP platforms with particular emphasis on using the machine learning and deep learning tools for drawing legitimate conclusions. Finally, we propose the conceptual challenges being faced and provide insights on future perspectives for managing those issues.

Evaluating the Influence of Deficit Irrigation on Fruit Yield and Quality Indices of Tomatoes Grown in Sandy Loam and Silty Loam Soils

The most important biotic stress factor impacting tomato crop biophysical, biochemical, physiological, and morphological features is water stress. A pot experiment was undertaken in a greenhouse to study the drought responsiveness of tomato (Solanum lycopersicum) yield and quality indices in sandy loam and silty loam soils. For both sandy loam and silty loam soils, the water supply levels were 70–100% FC, 60–70% FC, 50–60% FC, and 40–50% FC of ETo (crop evapotranspiration) from the vegetative stage to the fruit ripening stage, calculated using the Hargreaves–Samani (HS) model compared to the time-domain reflectometer (TDR) values calibrated using volumetric water content (VWC). The experiment was conducted as a 2 × 4 factorial experiment, arranged in a completely randomized block design, with four treatments replicated four times. In this study, we examined how sandy loam and silty loam soils at different % FC affect the total marketable yield and quality components of tomatoes, concentrating on total soluble solids (Brix), fruit firmness, dry fruit mass, pH, titratable acid (TA), ascorbic acid (Vit. C), and carotenoid composition. Lycopene and β-Carotene were estimated using the UV spectroscopy method, with absorption spectra bands centered at 451 nm, 472 nm, 485 nm, and 502 nm. The results revealed that even though there were some limitations, TDR-based soil moisture content values had a strong positive correlation with HS-based evapotranspiration, with R2 = 0.8, indicating an improvement whereby TDR can solely be used to estimate soil water content. Tomato plants subjected to 40–50% FC (ETo) water stress in both sandy loam and silty loam soils recorded the highest total soluble solids, titratable acidity, ascorbic acid content, and β-carotene content at an absorption peak of 482 nm, and lycopene content at an absorption peak of 472 nm, with lower fruit firmness, fruit juice content, and fruit juice pH, and a reduced marketable yield. Similarly, tomato plants subjected to 60–70% FC throughout the growing season achieved good fruit firmness, percent juice content, total soluble solids, titratable acidity, ascorbic acid content, and chlorophyll content (SPAD), with minimum fruit juice pH and high marketable yield in both soil textural types. It is concluded that subjecting tomato plants to 60–70% FC (ETo) has a constructive impact on the marketable yield quality indices of tomatoes.

Long-Term Assessment of Reference Baselines for the Determination of the Crop Water Stress Index in Maize under Mediterranean Conditions

Canopy temperature has been proposed as a relevant variable for crop water stress monitoring. Since crop temperature is highly influenced by the prevailing climatic conditions, it is usually normalized with indices such as the crop water stress index (CWSI). The index requires the use of two baselines that relate canopy temperature under maximum stress and non-water stress conditions with vapor pressure deficit (VPD). These reference baselines are specific to each crop and climatic region. In maize, they have been extensively studied for certain climatic regions but very little is known on their suitability to be used under Mediterranean-type conditions nor their temporal stability, both diurnally and between seasons. Thus, the objective of this work was to determine the reference baselines for maize grown under Mediterranean conditions, as well as its diurnal and long-term stability. An experiment was conducted for 3 years in a maize breeding field, under well-watered and water-stressed irrigation treatments. The determined reference baselines for computing CWSI in maize have shown to be stable in the long term but markedly influenced by the meteorological variations between 10–17 h UTC (Coordinated Universal Time). These results indicate that several reference baselines should be used for CWSI computing throughout the abovementioned time interval. The CWSI values calculated for well-watered and water-stressed maize breeding plots using the reference baselines derived in this study were successfully correlated with other physiological indicators of plant water stress.

Omics for the Improvement of Abiotic, Biotic, and Agronomic Traits in Major Cereal Crops: Applications, Challenges, and Prospects

Omics technologies, namely genomics, transcriptomics, proteomics, metabolomics, and phenomics, are becoming an integral part of virtually every commercial cereal crop breeding program, as they provide substantial dividends per unit time in both pre-breeding and breeding phases. Continuous advances in omics assure time efficiency and cost benefits to improve cereal crops. This review provides a comprehensive overview of the established omics methods in five major cereals, namely rice, sorghum, maize, barley, and bread wheat. We cover the evolution of technologies in each omics section independently and concentrate on their use to improve economically important agronomic as well as biotic and abiotic stress-related traits. Advancements in the (1) identification, mapping, and sequencing of molecular/structural variants; (2) high-density transcriptomics data to study gene expression patterns; (3) global and targeted proteome profiling to study protein structure and interaction; (4) metabolomic profiling to quantify organ-level, small-density metabolites, and their composition; and (5) high-resolution, high-throughput, image-based phenomics approaches are surveyed in this review.

Integrating Drone Technology into an Innovative Agrometeorological Methodology for the Precise and Real-Time Estimation of Crop Water Requirements

Precision agriculture has been at the cutting edge of research during the recent decade, aiming to reduce water consumption and ensure sustainability in agriculture. The proposed methodology was based on the crop water stress index (CWSI) and was applied in Greece within the ongoing research project GreenWaterDrone. The innovative approach combines real spatial data, such as infrared canopy temperature, air temperature, air relative humidity, and thermal infrared image data, taken above the crop field using an aerial micrometeorological station (AMMS) and a thermal (IR) camera installed on an unmanned aerial vehicle (UAV). Following an initial calibration phase, where the ground micrometeorological station (GMMS) was installed in the crop, no equipment needed to be maintained in the field. Aerial and ground measurements were transferred in real time to sophisticated databases and applications over existing mobile networks for further processing and estimation of the actual water requirements of a specific crop at the field level, dynamically alerting/informing local farmers/agronomists of the irrigation necessity and additionally for potential risks concerning their fields. The supported services address farmers’, agricultural scientists’, and local stakeholders’ needs to conform to regional water management and sustainable agriculture policies. As preliminary results of this study, we present indicative original illustrations and data from applying the methodology to assess UAV functionality while aiming to evaluate and standardize all system processes.

Ground-Based Hyperspectral Remote Sensing for Estimating Water Stress in Tomato Growth in Sandy Loam and Silty Loam Soils

Drought and water scarcity due to global warming, climate change, and social development have been the most death-defying threat to global agriculture production for the optimization of water and food security. Reflectance indices obtained by an Analytical Spectral Device (ASD) Spec 4 hyperspectral spectrometer from tomato growth in two soil texture types exposed to four water stress levels (70-100% FC, 60-70% FC, 50-60% FC, and 40-50% FC) was deployed to schedule irrigation and management of crops' water stress. The treatments were replicated four times in a randomized complete block design (RCBD) in a 2 × 4 factorial experiment. Water stress treatments were monitored with Time Domain Reflectometer (TDR) every 12 h before and after irrigation to maintain soil water content at the desired (FC%). Soil electrical conductivity (Ec) was measured daily throughout the growth cycle of tomatoes in both soil types. Ec was revealing a strong correlation with water stress at R² above 0.95 p < 0.001. Yield was measured at the end of the end of the growing season. The results revealed that yield had a high correlation with water stress at R² = 0.9758 and 0.9816 p < 0.01 for sandy loam and silty loam soils, respectively. Leaf temperature (LT °C), relative leaf water content (RLWC), leaf chlorophyll content (LCC), Leaf area index (LAI), were measured at each growth stage at the same time spectral reflectance data were measured throughout the growth period. Spectral reflectance indices used were grouped into three: (1) greenness vegetative indices; (2) water overtone vegetation indices; (3) Photochemical Reflectance Index centered at 570 nm (PRI₅₇₀), and normalized PRI (PRInorm). These reflectance indices were strongly correlated with all four water stress indicators and yield. The results revealed that NDVI, RDVI, WI, NDWI, NDWI₁₆₄₀, PRI₅₇₀, and PRInorm were the most sensitive indices for estimating crop water stress at each growth stage in both sandy loam and silty loam soils at R² above 0.35. This study recounts the depth of 858 to 1640 nm band absorption to water stress estimation, comparing it to other band depths to give an insight into the usefulness of ground-based hyperspectral reflectance indices for assessing crop water stress at different growth stages in different soil types.

Rapid Estimation of Crop Water Stress Index on Tomato Growth

The goal of this research is to use a WORKSWELL WIRIS AGRO R INFRARED CAMERA (WWARIC) to assess the crop water stress index (CWSI_W) on tomato growth in two soil types. This normalized index (CWSI) can map water stress to prevent drought, mapping yield, and irrigation scheduling. The canopy temperature, air temperature, and vapor pressure deficit were measured and used to calculate the empirical value of the CWSI based on the Idso approach (CWSI_Idso). The vegetation water content (VWC) was also measured at each growth stage of tomato growth. The research was conducted as a 2 × 4 factorial experiment arranged in a Completely Randomized Block Design. The treatments imposed were two soil types: sandy loam and silt loam, with four water stress treatment levels at 70–100% FC, 60–70% FC, 50–60% FC, and 40–50% FC on the growth of tomatoes to assess the water stress. The results revealed that CWSI_Idso and CWSI_W proved a strong correlation in estimating the crop water status at R² above 0.60 at each growth stage in both soil types. The fruit expansion stage showed the highest correlation at R² = 0.8363 in sandy loam and R² = 0.7611 in silt loam. VWC and CWSI_W showed a negative relationship with a strong correlation at all the growth stages with R² values above 0.8 at p < 0.05 in both soil types. Similarly, the CWSI_W and yield also showed a negative relationship and a strong correlation with R² values above 0.95, which indicated that increasing the CWSI_W had a negative effect on the yield. However, the total marketable yield ranged from 2.02 to 6.8 kg plant⁻¹ in sandy loam soil and 1.75 to 5.4 kg plant⁻¹ in silty loam soil from a low to high CWSI_W. The highest mean marketable yield was obtained in sandy loam soil at 70–100% FC (0.0 < CWSI_W ≤ 0.25), while the least-marketable yield was obtained in silty loam soil 40–50% FC (0.75 < CWSI_W ≤ 1.0); hence, it is ideal for maintaining the crop water status between 0.0 < CWSI_W ≤ 0.25 for the optimum yield. These experimental results proved that the WWARIC effectively assesses the crop water stress index (CWSI_W) in tomatoes for mapping the yield and irrigation scheduling.

Recognizing Zucchinis Intercropped with Sunflowers in UAV Visible Images Using an Improved Method Based on OCRNet

An improved semantic segmentation method based on object contextual representations network (OCRNet) is proposed to accurately identify zucchinis intercropped with sunflowers from unmanned aerial vehicle (UAV) visible images taken over Hetao Irrigation District, Inner Mongolia, China. The proposed method improves on the performance of OCRNet in two respects. First, based on the object region context extraction structure of the OCRNet, a branch that uses the channel attention module was added in parallel to rationally use channel feature maps with different weights and reduce the noise of invalid channel features. Secondly, Lovász-Softmax loss was introduced to improve the accuracy of the object region representation in the OCRNet and optimize the final segmentation result at the object level. We compared the proposed method with extant advanced semantic segmentation methods (PSPNet, DeepLabV3+, DNLNet, and OCRNet) in two test areas to test its effectiveness. The results showed that the proposed method achieved the best semantic segmentation effect in the two test areas. More specifically, our method performed better in processing image details, segmenting field edges, and identifying intercropping fields. The proposed method has significant advantages for crop classification and intercropping recognition based on UAV visible images, and these advantages are more substantive in object-level evaluation metrics (mIoU and intercropping IoU).

Biomass estimation of cultivated red algae Pyropia using unmanned aerial platform based multispectral imaging

BACKGROUND

Pyropia is an economically advantageous genus of red macroalgae, which has been cultivated in the coastal areas of East Asia for over 300 years. Realizing estimation of macroalgae biomass in a high-throughput way would great benefit their cultivation management and research on breeding and phenomics. However, the conventional method is labour-intensive, time-consuming, manually destructive, and prone to human error. Nowadays, high-throughput phenotyping using unmanned aerial vehicle (UAV)-based spectral imaging is widely used for terrestrial crops, grassland, and forest, but no such application in marine aquaculture has been reported.

RESULTS

In this study, multispectral images of cultivated Pyropia yezoensis were taken using a UAV system in the north of Haizhou Bay in the midwestern coast of Yellow Sea. The exposure period of P. yezoensis was utilized to prevent the significant shielding effect of seawater on the reflectance spectrum. The vegetation indices of normalized difference vegetation index (NDVI), ratio vegetation index (RVI), difference vegetation index (DVI) and normalized difference of red edge (NDRE) were derived and indicated no significant difference between the time that P. yezoensis was completely exposed to the air and 1 h later. The regression models of the vegetation indices and P. yezoensis biomass per unit area were established and validated. The quadratic model of DVI (Biomass = - 5.550DVI² + 105.410DVI + 7.530) showed more accuracy than the other index or indices combination, with the highest coefficient of determination (R²), root mean square error (RMSE), and relative estimated accuracy (Ac) values of 0.925, 8.06, and 74.93%, respectively. The regression model was further validated by consistently predicting the biomass with a high R² value of 0.918, RMSE of 8.80, and Ac of 82.25%.

CONCLUSIONS

This study suggests that the biomass of Pyropia can be effectively estimated using UAV-based spectral imaging with high accuracy and consistency. It also implied that multispectral aerial imaging is potential to assist digital management and phenomics research on cultivated macroalgae in a high-throughput way.

Automated Canopy Delineation and Size Metrics Extraction for Strawberry Dry Weight Modeling Using Raster Analysis of High-Resolution Imagery

Capturing high spatial resolution imagery is becoming a standard operation in many agricultural applications. The increased capacity for image capture necessitates corresponding advances in analysis algorithms. This study introduces automated raster geoprocessing methods to automatically extract strawberry (Fragaria × ananassa) canopy size metrics using raster image analysis and utilize the extracted metrics in statistical modeling of strawberry dry weight. Automated canopy delineation and canopy size metrics extraction models were developed and implemented using ArcMap software v 10.7 and made available by the authors. The workflows were demonstrated using high spatial resolution (1 mm resolution) orthoimages and digital surface models (2 mm) of 34 strawberry plots (each containing 17 different plant genotypes) planted on raised beds. The images were captured on a weekly basis throughout the strawberry growing season (16 weeks) between early November and late February. The results of extracting four canopy size metrics (area, volume, average height, and height standard deviation) using automatically delineated and visually interpreted canopies were compared. The trends observed in the differences between canopy metrics extracted using the automatically delineated and visually interpreted canopies showed no significant differences. The R2 values of the models were 0.77 and 0.76 for the two datasets and the leave-one-out (LOO) cross validation root mean square error (RMSE) of the two models were 9.2 g and 9.4 g, respectively. The results show the feasibility of using automated methods for canopy delineation and canopy metric extraction to support plant phenotyping applications.

A Review on Drone-Based Data Solutions for Cereal Crops

Food security is a longstanding global issue over the last few centuries. Eradicating hunger and all forms of malnutrition by 2030 is still a key challenge. The COVID-19 pandemic has placed additional stress on food production, demand, and supply chain systems; majorly impacting cereal crop producer and importer countries. Short food supply chain based on the production from local farms is less susceptible to travel and export bans and works as a smooth system in the face of these stresses. Local drone-based data solutions can provide an opportunity to address these challenges. This review aims to present a deeper understanding of how the drone-based data solutions can help to combat food insecurity caused due to the pandemic, zoonotic diseases, and other food shocks by enhancing cereal crop productivity of small-scale farming systems in low-income countries. More specifically, the review covers sensing capabilities, promising algorithms, and methods, and added-value of novel machine learning algorithms for local-scale monitoring, biomass and yield estimation, and mapping of them. Finally, we present the opportunities for linking information from citizen science, internet of things (IoT) based on low-cost sensors and drone-based information to satellite data for upscaling crop yield estimation to a larger geographical extent within the Earth Observation umbrella.

Potential of UAS-Based Remote Sensing for Estimating Tree Water Status and Yield in Sweet Cherry Trees

The present work aims to assess the usefulness of five vegetation indices (VI) derived from multispectral UAS imagery to capture the effects of deficit irrigation on the canopy structure of sweet cherry trees (Prunus avium L.) in southeastern Spain. Three irrigation treatments were assayed, a control treatment and two regulated deficit irrigation treatments. Four airborne flights were carried out during two consecutive seasons; to compare the results of the remote sensing VI, the conventional and continuous water status indicators commonly used to manage sweet cherry tree irrigation were measured, including midday stem water potential (Ψs) and maximum daily shrinkage (MDS). Simple regression between individual VIs and Ψs or MDS found stronger relationships in postharvest than in preharvest. Thus, the normalized difference vegetation index (NDVI), resulted in the strongest relationship with Ψs (r2 = 0.67) and MDS (r2 = 0.45), followed by the normalized difference red edge (NDRE). The sensitivity analysis identified the optimal soil adjusted vegetation index (OSAVI) as the VI with the highest coefficient of variation in postharvest and the difference vegetation index (DVI) in preharvest. A new index is proposed, the transformed red range vegetation index (TRRVI), which was the only VI able to statistically identify a slight water deficit applied in preharvest. The combination of the VIs studied was used in two machine learning models, decision tree and artificial neural networks, to estimate the extra labor needed for harvesting and the sweet cherry yield.

Deep Learning Application in Plant Stress Imaging: A Review

Plant stress is one of major issues that cause significant economic loss for growers. The labor-intensive conventional methods for identifying the stressed plants constrain their applications. To address this issue, rapid methods are in urgent needs. Developments of advanced sensing and machine learning techniques trigger revolutions for precision agriculture based on deep learning and big data. In this paper, we reviewed the latest deep learning approaches pertinent to the image analysis of crop stress diagnosis. We compiled the current sensor tools and deep learning principles involved in plant stress phenotyping. In addition, we reviewed a variety of deep learning applications/functions with plant stress imaging, including classification, object detection, and segmentation, of which are closely intertwined. Furthermore, we summarized and discussed the current challenges and future development avenues in plant phenotyping.

Automatic Classification of Cotton Root Rot Disease Based on UAV Remote Sensing

Cotton root rot (CRR) is a persistent soilborne fungal disease that is devastating to cotton in the southwestern U.S. and Mexico. Research has shown that CRR can be prevented or at least mitigated by applying a fungicide at planting, but the fungicide should be applied precisely to minimize the quantity of product used and the treatment cost. The CRR-infested areas within a field are consistent from year to year, so it is possible to apply the fungicide only at locations where CRR is manifest, thus minimizing the amount of fungicide applied across the field. Previous studies have shown that remote sensing (RS) from manned aircraft is an effective means of delineating CRR-infested field areas. Applying various classification methods to moderate-resolution (1.0 m/pixel) RS images has recently become the conventional way to delineate CRR-infested areas. In this research, an unmanned aerial vehicle (UAV) was used to collect high-resolution remote sensing (RS) images in three Texas fields known to be infested with CRR. Supervised, unsupervised, and combined unsupervised classification methods were evaluated for differentiating CRR from healthy zones of cotton plants. Two new automated classification methods that take advantage of the high resolution inherent in UAV RS images were also evaluated. The results indicated that the new automated methods were up to 8.89% better than conventional classification methods in overall accuracy. One of these new methods, an automated method combining k-means segmentation and morphological opening and closing, provided the best results, with overall accuracy of 88.5% and the lowest errors of omission (11.44%) and commission (16.13%) of all methods considered.

Autonomous Mobile Ground Control Point Improves Accuracy of Agricultural Remote Sensing through Collaboration with UAV

Ground control points (GCPs) are critical for agricultural remote sensing that require georeferencing and calibration of images collected from an unmanned aerial vehicles (UAV) at different times. However, the conventional stationary GCPs are time-consuming and labor-intensive to measure, distribute, and collect their information in a large field setup. An autonomous mobile GCP and a collaboration strategy to communicate with the UAV were developed to improve the efficiency and accuracy of the UAV-based data collection process. Prior to actual field testing, preliminary tests were conducted using the system to show the capability of automatic path tracking by reducing the root mean square error (RMSE) for lateral deviation from 34.3 cm to 15.6 cm based on the proposed look-ahead tracking method. The tests also indicated the feasibility of moving reflectance reference panels successively along all the waypoints without having detrimental effects on pixel values in the mosaicked images, with the percentage errors in digital number values ranging from −1.1% to 0.1%. In the actual field testing, the autonomous mobile GCP was able to successfully cooperate with the UAV in real-time without any interruption, showing superior performances for georeferencing, radiometric calibration, height calibration, and temperature calibration, compared to the conventional calibration method that has stationary GCPs.

Maize Crop Coefficient Estimated from UAV-Measured Multispectral Vegetation Indices

The rapid, accurate, and real-time estimation of crop coefficients at the farm scale is one of the key prerequisites in precision agricultural water management. This study aimed to map the maize crop coefficient (K_c) with improved accuracy under different levels of deficit irrigation. The proposed method for estimating the K_c is based on multispectral images of high spatial resolution taken using an unmanned aerial vehicle (UAV). The analysis was performed on five experimental plots using K_c values measured from the daily soil water balance in Ordos, Inner Mongolia, China. To accurately estimate the K_c, the fraction of vegetation cover (f_c) derived from the normalized difference vegetation index (NDVI) was used to compare with field measurements, and the stress coefficients (K_s) calculated from two vegetation index (VI) regression models were compared. The results showed that the NDVI values under different levels of deficit irrigation had no significant difference in the reproductive stage but changed significantly in the maturation stage, with a decrease of 0.09 with 72% water applied difference. The f_c calculated from the NDVI had a high correlation with field measurement data, with a coefficient of determination (R²) of 0.93. The ratios of transformed chlorophyll absorption in reflectance index (TCARI) to renormalized difference vegetation index (RDVI) and TCARI to soil-adjusted vegetation index (SAVI) were used, respectively, to establish two types of K_s regression models to retrieve K_c. Compared to the TCARI/SAVI model, the TCARI/RDVI model under different levels of deficit irrigation had better correlation with K_c, with R² and root-mean-square error (RMSE) values ranging from 0.68 to 0.80 and from 0.140 to 0.232, respectively. Compared to K_c calculated from on-site measurements, the K_c values retrieved from the VI regression models established in this study had greater ability to assess the field variability of soil and crops. Overall, use of the UAV-measured multispectral vegetation index approach could improve water management at the farm scale.

UAV Multispectral Imagery Combined with the FAO-56 Dual Approach for Maize Evapotranspiration Mapping in the North China Plain

As the key principle of precision farming, variation of actual crop evapotranspiration (ET) within the field serves as the basis for crop management. Although the estimation of evapotranspiration has achieved great progress through the combination of different remote sensing data and the FAO-56 crop coefficient (Kc) method, lack of the accurate crop water stress coefficient (Ks) at different space–time scales still hinder its operational application to farmer practices. This work aims to explore the potential of multispectral images taken from unmanned aerial vehicles (UAVs) for estimating the temporal and spatial variability of Ks under the water stress condition and mapping the variability of field maize ET combined with the FAO-56 Kc model. To search for an optimal estimation method, the performance of several models was compared including models based on Ks either derived from the crop water stress index (CWSI) or calculated by the canopy temperature ratio (Tc ratio), and combined with the basal crop coefficient (Kcb) based on the normalized difference vegetation index (NDVI). Compared with the Ks derived from the Tc ratio, the CWSI-based Ks responded well to water stress and had strong applicability and convenience. The results of the comparison show that ET derived from the Ks-CWSI had a higher correlation with the modified FAO-56 method, with an R2 = 0.81, root mean square error (RMSE) = 0.95 mm/d, and d = 0.94. In contrast, ET derived from the Ks-Tc ratio had a relatively lower correlation with an R2 = 0.68 and RMSE = 1.25 mm/d. To obtain the evapotranspiration status of the whole maize field and formulate reasonable irrigation schedules, the CWSI obtained by a handheld infrared thermometer was inverted by the renormalized difference vegetation index (RDVI) and the transformed chlorophyll absorption in reflectance index (TCARI). Then, the whole map of Ks can be derived from the VIs by the relationship between CWSI and Ks and can be taken as the basic input for ET estimation at the field scale. The final ET results based on multispectral UAV interpolation measurements can well reflect the crop ET status under different irrigation levels, and greatly help to improve irrigation scheduling through more precise management of deficit irrigation.

Decision Support System for Variable Rate Irrigation Based on UAV Multispectral Remote Sensing

Rational utilization of water resources is one of the major methods of water conservation. There are significant differences in the irrigation needs of different agricultural fields because of their spatial variability. Therefore, a decision support system for variable rate irrigation (DSS-VRI) by center pivot was developed. This system can process multi-spectral images taken by unmanned aerial vehicles (UAVs) and obtain the vegetation index (VI). The crop evapotranspiration model (ET_c) and crop water stress index (CWSI) were obtained from their established relationships with the VIs. The inputs to the fuzzy inference system were constituted with ET_c, CWSI and precipitation. To provide guidance for users, the duty-cycle control map was outputted using ambiguity resolution. The control command contained in the map adjusted the duty cycle of the solenoid valve, and then changed the irrigation amount. A water stress experiment was designed to verify the rationality of the DSS-VRI. The results showed that the more severe water stress is, the more irrigation is obtained, consistent with the expected results. Meanwhile, a user-friendly software interface was developed to implement the DSS-VRI function.

Estimating Above-Ground Biomass of Maize Using Features Derived from UAV-Based RGB Imagery

The rapid, accurate, and economical estimation of crop above-ground biomass at the farm scale is crucial for precision agricultural management. The unmanned aerial vehicle (UAV) remote-sensing system has a great application potential with the ability to obtain remote-sensing imagery with high temporal-spatial resolution. To verify the application potential of consumer-grade UAV RGB imagery in estimating maize above-ground biomass, vegetation indices and plant height derived from UAV RGB imagery were adopted. To obtain a more accurate observation, plant height was directly derived from UAV RGB point clouds. To search the optimal estimation method, the estimation performances of the models based on vegetation indices alone, based on plant height alone, and based on both vegetation indices and plant height were compared. The results showed that plant height directly derived from UAV RGB point clouds had a high correlation with ground-truth data with an R2 value of 0.90 and an RMSE value of 0.12 m. The above-ground biomass exponential regression models based on plant height alone had higher correlations for both fresh and dry above-ground biomass with R2 values of 0.77 and 0.76, respectively, compared to the linear regression model (both R2 values were 0.59). The vegetation indices derived from UAV RGB imagery had great potential to estimate maize above-ground biomass with R2 values ranging from 0.63 to 0.73. When estimating the above-ground biomass of maize by using multivariable linear regression based on vegetation indices, a higher correlation was obtained with an R2 value of 0.82. There was no significant improvement of the estimation performance when plant height derived from UAV RGB imagery was added into the multivariable linear regression model based on vegetation indices. When estimating crop above-ground biomass based on UAV RGB remote-sensing system alone, looking for optimized vegetation indices and establishing estimation models with high performance based on advanced algorithms (e.g., machine learning technology) may be a better way.

Maize Canopy Temperature Extracted From UAV Thermal and RGB Imagery and Its Application in Water Stress Monitoring

To identify drought-tolerant crop cultivars or achieve a balance between water use and yield, accurate measurements of crop water stress are needed. In this study, the canopy temperature (Tc) of maize at the late vegetative stage was extracted from high-resolution red-green-blue (RGB, 1.25 cm) and thermal (7.8 cm) images taken by an unmanned aerial vehicle (UAV). To reduce the number of parameters for crop water stress monitoring, four simple methods that require only Tc were identified: Tc, degrees above non-stress, standard deviation of Tc, and variation coefficient of Tc. The ground-truth temperatures obtained using a handheld infrared thermometer were used to calibrate the temperature obtained from the UAV thermal images and to evaluate the Tc extraction results. Measured leaf stomatal conductance values were used to evaluate the performance of the four Tc-based crop water stress indicators. The results showed a strong correlation between ground-truth Tc and Tc extracted by the red-green ratio index (RGRI)-Otsu method proposed in this study, with a coefficient of determination of 0.94 (n = 15) and root mean square error value of 0.7°C. The RGRI-Otsu method was most accurate for estimating temperatures around 32.9°C, but the magnitude of residuals increased above and below this value. This phenomenon may be attributable to changes in canopy cover (leaf curling) under water stress, resulting in changes in the proportion of exposed sunlit soil in UAV thermal orthophotographs. Therefore, to improve the accuracy of maize canopy detection and extraction, optimal methods and better strategies for eliminating mixed pixels are needed. This study demonstrates the potential of using high-resolution UAV RGB images to supplement UAV thermal images for the accurate extraction of maize Tc.