Eco-Friendly Estimation of Heavy Metal Contents in Grapevine Foliage Using In-Field Hyperspectral Data and Multivariate Analysis

Application of Visible/Near-Infrared Spectroscopy and Hyperspectral Imaging with Machine Learning for High-Throughput Plant Heavy Metal Stress Phenotyping: A Review

Heavy metal pollution is becoming a prominent stress on plants. Plants contaminated with heavy metals undergo changes in external morphology and internal structure, and heavy metals can accumulate through the food chain, threatening human health. Detecting heavy metal stress on plants quickly, accurately, and nondestructively helps to achieve precise management of plant growth status and accelerate the breeding of heavy metal-resistant plant varieties. Traditional chemical reagent-based detection methods are laborious, destructive, time-consuming, and costly. The internal and external structures of plants can be altered by heavy metal contamination, which can lead to changes in plants' absorption and reflection of light. Visible/near-infrared (V/NIR) spectroscopy can obtain plant spectral information, and hyperspectral imaging (HSI) can obtain spectral and spatial information in simple, speedy, and nondestructive ways. These 2 technologies have been the most widely used high-throughput phenotyping technologies of plants. This review summarizes the application of V/NIR spectroscopy and HSI in plant heavy metal stress phenotype analysis as well as introduces the method of combining spectroscopy with machine learning approaches for high-throughput phenotyping of plant heavy metal stress, including unstressed and stressed identification, stress types identification, stress degrees identification, and heavy metal content estimation. The vegetation indexes, full-range spectra, and feature bands identified by different plant heavy metal stress phenotyping methods are reviewed. The advantages, limitations, challenges, and prospects of V/NIR spectroscopy and HSI for plant heavy metal stress phenotyping are discussed. Further studies are needed to promote the research and application of V/NIR spectroscopy and HSI for plant heavy metal stress phenotyping.

Proximal hyperspectral sensing of abiotic stresses in plants

Recent attempts, advances and challenges, as well as future perspectives regarding the application of proximal hyperspectral sensing (where sensors are placed within 10 m above plants, either on land-based platforms or in controlled environments) to assess plant abiotic stresses have been critically reviewed. Abiotic stresses, caused by either physical or chemical reasons such as nutrient deficiency, drought, salinity, heavy metals, herbicides, extreme temperatures, and so on, may be more damaging than biotic stresses (affected by infectious agents such as bacteria, fungi, insects, etc.) on crop yields. The proximal hyperspectral sensing provides images at a sub-millimeter spatial resolution for doing an in-depth study of plant physiology and thus offers a global view of the plant's status and allows for monitoring spatio-temporal variations from large geographical areas reliably and economically. The literature update has been based on 362 research papers in this field, published from 2010, most of which are from four years ago and, in our knowledge, it is the first paper that provides a comprehensive review of the applications of the technique for the detection of various types of abiotic stresses in plants.

Monitoring effects of heavy metal stress on biochemical and spectral parameters of cotton using hyperspectral reflectance

Monitoring heavy metal pollution in agricultural ecosystems is crucial to ensure environmental safety. Heavy metals interfere with plants' biochemical characteristics, such as chlorophyll content and photosynthesis, and also influence leaves' spectral properties. Spectral changes caused by heavy metal stress can easily be measured using proximal sensing or in-field spectroscopy. This research utilizes a combined approach of biochemical and spectral characteristics to evaluate cotton crops' performance under different heavy metal (Pb & Cd) stress after artificial contamination with the metal under study. A detailed study of spectroscopy and lab-based measurements for chlorophyll and heavy metal content during the crop's growth cycle revealed some significant findings. Results indicated that the chlorophyll pigments decreased significantly with increased heavy metal levels. Pb accumulation is high in cotton as compared to Cd. The most sensitive stage for the accumulation of Pb is the initial vegetative stage of cotton. The transfer factor from soil to plant was higher for Pb, indicating the feasibility of growing cotton in Pb-contaminated soil. The spectral measurement showed no characteristic changes in standard reflectance spectra due to heavy metal stress. Wavelet decomposition of reflectance spectra amplified the changes indicating Pb stress in cotton during the initial vegetative stage. The significant correlation of greater than - 0.70 between the reconstructed detail wavelet coefficients at the third level of the decomposition in the wavelength range of 651-742 nm suggested that Pb stress caused spectral changes in near-infrared and visible ranges in cotton plants. The effects of Cd stress on the cotton plant were negligible due to less absorption. Thus, detailed wavelet coefficients at the third level of decomposition in the range of 651-742 nm are a potential indicator of Pb stress. The results of this study can provide a basis for quantifying heavy metal stress in a particular region.

The New Hyperspectral Analysis Method for Distinguishing the Types of Heavy Metal Copper and Lead Pollution Elements

In recent years, the problem of heavy metal pollution in agriculture caused by industrial development has been particularly prominent, directly affecting food and ecological environmental safety. Hyperspectral remote sensing technology has the advantages of high spectral resolution and nondestructive monitoring. The physiological and biochemical parameters of crops undergo similar changes under different heavy metal stresses. Therefore, it is a great challenge to explore the use of hyperspectral technology to distinguish the types of the heavy metal copper (Cu) and lead (Pb) elements. This is also a hot topic in the current research. In this study, several models are proposed to distinguish copper and lead elements by combining multivariate empirical mode decomposition (MEMD) transformation and machine learning. First, MEMD is introduced to decompose the original spectrum, which effectively removes the noise and highlights and magnifies the weak information of the spectrum. The successive projections algorithm (SPA), competitive adaptive reweighted sampling (CARS), and iteratively retaining informative variables (IRIV) were used to screen the characteristic bands and were combined with extreme learning machine (ELM), support vector machine (SVM), and general regression neural network (GRNN) algorithms to build models to distinguish the types of Cu and Pb elements. The quality of the model was evaluated using accuracy (A), precision (P), recall (R), and F-score. The results showed that the MEMD-SPA-SVM, MEMD-CARS-SVM, MEMD-SPA-ELM, MEMD-CARS-ELM, and MEMD-IRIV-ELM models intuitively and effectively distinguished the types of Cu and Pb elements. Their accuracy and F-scores were all greater than 0.8. To verify the superiority of these models, the same model was constructed based on first derivative (FD) and second derivative (SD) transformations, and the obtained classification and recognition accuracy (A) and F-score were both lower than 0.8, which further confirmed the superiority of the model established after MEMD transformation. The model proposed in this study has great potential for applying hyperspectral technology to distinguish the types of elements contaminated by Cu and Pb in crops.

Rapid quantitative characterization of tea seedlings under lead-containing aerosol particles stress using Vis-NIR spectra

The problem of excessive lead content in tea has become more and more serious with the development of society and industry. This paper investigated the ability of visible and near-infrared (Vis-NIR) spectroscopy to evaluate foliar lead uptake by tea plants through simulating real air pollution. Lead content of tea leaves in different treatment groups during stress time was measured by inductively coupled plasma mass spectrometry (ICP-MS). It was determined that stomata can be a channel for lead particles in the air and most of the lead entering through the stomata accumulates in the leaves. The spectral variation of treated samples was measured, and it was found that a combination of partial least squares-discriminant analysis (PLS-DA) and spectral responses can perfectly classify the tea samples under different lead concentrations stress with an overall accuracy of 0.979. Then the Vis-NIR spectra were used for fast monitoring physiological and biochemical indicators in tea leaves under atmospheric deposition. Relevant spectra pretreatment methods and characteristic wavelength selection approaches were evaluated for quantitative analysis and then optimal prediction models to instantly detect quality indicators in tea samples were built. Among predictive models, PLS had the best results (RMSE = 0.139 mg/g, 0.663 mmol/g, and 1.494 μmol/g) for the prediction of chlorophyll a (Chl-a), ascorbic acid (ASA), and glutathione (GSH), respectively. Also, principal component regression (PCR) gave the best results (RMSE = 0.053 mg/g, 0.024 mg/g, and 0.011%) for prediction of chlorophyll b (Chl-b), carotenoid (Car) and moisture content (MC), respectively. Results of this study can be applied for developing an effective and reliable approach for monitoring atmospheric deposition in plants.

Potential use of grapevine cv Askari for heavy metal phytoremediation purposes at greenhouse scale

Grapevine varieties possess desirable characteristics for phytoremediation purposes. We investigated the potential of grapevine cv Askari in phytoremediation of heavy metal (HM) pollutions. In total 80 grapevine seedlings were exposed to four levels of HM stress (mild, low, moderate, and severe) in greenhouse condition during two growing years (2018 and 2019). The HM concentrations (Zn, Cu, Cd, Cr, and Pb) were subsequently determined in the soils, roots, and grapevine aboveground parts (AGPs), and then phytoextraction and phytostabilization potential assessment indices, i.e., biological absorption coefficient (BAC), bioconcentration factor (BCF), and translocation factor (TF), were calculated. Results led to ranking of the cumulative concentration order of the HMs, i.e.: soils (3476.6) > AGPs (1418.8) > roots (562.2) mg/kg-DW. The mean concentrations ranking order of studied HMs were in soil: Cu (1184.8) > Pb (865.5) > Cd (803.2) > Cr (623.0) > Zn (277.9) mg/kg-DW; roots, Cu (242.0) > Cd (239.5) > Zn (188.8) > Pb (63.5) > Cr (17.2) mg/kg-DW; and AGP environments, Cu (910.2) > Cd (322.9) > Zn (160.3) > Pb (152.9) > Cr (25.3) mg/kg-DW. Principal component analysis results demonstrated the same distribution pattern for the studied HMs between soil, root, and AGP environments, and the highest correlation coefficients were found for Cu, Zn, and Cd. Based on the obtained results (Cu-BAC (> 1), Zn-BCF (> 1), Zn-TF (< 1), Cu-AGP mean concentrations (> 1000 mg/kg-DW), and Cd-AGP mean concentrations (> 100 mg/kg-DW)), it can be concluded that grapevine cv Askari possesses potentials for phytoremediation purposes of Cu, Zn, and Cd. These results were acquired in a greenhouse environment and under controlled conditions; we suggest that the phytoremediation potential of this grapevine variety be assessed in a contaminated vineyard environment as well.

Special Issue “Hyperspectral Remote Sensing of Agriculture and Vegetation”

The advent of up-to-date hyperspectral technologies, and their increasing performance both spectrally and spatially, allows for new and exciting studies and practical applications in agriculture (soils and crops) and vegetation mapping and monitoring atregional (satellite platforms) andwithin-field (airplanes, drones and ground-based platforms) scales. Within this context, the special issue has included eleven international research studies using different hyperspectral datasets (from the Visible to the Shortwave Infrared spectral region) for agricultural soil, crop and vegetation modelling, mapping, and monitoring. Different classification methods (Support Vector Machine, Random Forest, Artificial Neural Network, Decision Tree) and crop canopy/leaf biophysical parameters (e.g., chlorophyll content) estimation methods (partial least squares and multiple linear regressions) have been evaluated. Further, drone-based hyperspectral mapping by combining bidirectional reflectance distribution function (BRDF) model for multi-angle remote sensing and object-oriented classification methods are also examined. A review article on the recent advances of hyperspectral imaging technology and applications in agriculture is also included in this issue. The special issue is intended to help researchers and farmers involved in precision agriculture technology and practices to a better comprehension of strengths and limitations of the application of hyperspectral measurements for agriculture and vegetation monitoring. The studies published herein can be used by the agriculture and vegetation research and management communities to improve the characterization and evaluation of biophysical variables and processes, as well as for a more accurate prediction of plant nutrient using existing and forthcoming hyperspectral remote sensing technologies.

Optimal Spectral Wavelengths for Discriminating Orchard Species Using Multivariate Statistical Techniques

Sustainable management of orchard fields requires detailed information about the tree types, which is a main component of precision agriculture programs. To this end, hyperspectral imagery can play a major role in orchard tree species mapping. Efficient use of hyperspectral data in combination with field measurements requires the development of optimized band selection strategies to separate tree species. In this study, field spectroscopy (350 to 2500 nm) was performed through scanning 165 spectral leaf samples of dominant orchard tree species (almond, walnut, and grape) in Chaharmahal va Bakhtiyari province, Iran. Two multivariable methods were employed to identify the optimum wavelengths: the first includes three-step approach ANOVA, random forest classifier (RFC) and principal component analysis (PCA), and the second employs partial least squares (PLS). For both methods we determined whether tree species can be spectrally separated using discriminant analysis (DA) and then the optimal wavelengths were identified for this purpose. Results indicate that all species express distinct spectral behaviors at the beginning of the visible range (from 350 to 439 nm), the red edge and the near infrared wavelengths (from 701 to 1405 nm). The ANOVA test was able to reduce primary wavelengths (2151) to 792, which had a significant difference (99% confidence level), then the RFC further reduced the wavelengths to 118. By removing the overlapping wavelengths, the PCA represented five components (99.87% of variance) which extracted optimal wavelengths were: 363, 423, 721, 1064, and 1388 nm. The optimal wavelengths for the species discrimination using the best PLS-DA model (100% accuracy) were at 397, 515, 647, 1386, and 1919 nm.