Remote Distinction of A Noxious Weed (Musk Thistle: CarduusNutans) Using Airborne Hyperspectral Imagery and the Support Vector Machine Classifier

Mapping forest and site quality of planted Chinese fir forest using sentinel images

Normally, forest quality (FQ) and site quality (SQ) play an important role in evaluating actual and potential forest productivity. Traditionally, these assessment indices (FQ and SQ) are mainly based on forest parameters extracted from ground measurement (forest height, age, density, forest stem volume (FSV), and DBH), which is labor-intensive and difficult to access in certain remote forest areas. Recently, remote sensing images combined with a small number of samples were gradually applied to map forest parameters because of the various advantages of remote sensing technology, such as low cost, spatial coverage, and high efficiency. However, FQ and SQ related to forest parameters are rarely estimated using remote sensing images and machine learning models. In this study, the Sentinel images and ground samples of planted Chinese fir forest located in the ecological "green-core" area of Changzhutan urban cluster, were initially employed to explore the feasibility of mapping the FQ and SQ. And then, four types of alternative variables (backscattering coefficients (VV and VH), multi-spectral bands, vegetation indices, and texture characteristics) were extracted from Sentinel-1A and Sentinel-2A images, respectively. After selecting variables using a stepwise regression model, three machine learning models (SVR, RF, and KNN) were employed to estimate various forest parameters. Finally, the FQ of the study region was directly mapped by the weights sum of related factors extracted by the factor analysis method, and the SQ was also extracted using mapped forest height and age. The results illustrated that the accuracy of estimated forest parameters (DBH, H, and Age) was significantly higher than FSV, FCC, and Age and the largest and smallest rRMSEs were observed from FSV (0.38~0.40) and forest height (0.20~0.21), respectively. Using mapped forest parameters, it also resulted that the rRMSEs of estimated FQ and SQ were 0.19 and 0.15, respectively. Furthermore, after normalization and grading, the grades of forest quality were mainly concentrated in grades I, II, and III in the study region. Though the accuracy of mapping FQ and SQ is limited by the saturation phenomenon, it is significantly proved that using machine learning models and Sentinel images has great potential to indirectly map FQ and SQ.

Mapping Invasive Plant Species with Hyperspectral Data Based on Iterative Accuracy Assessment Techniques

Recent developments in computer hardware made it possible to assess the viability of permutation-based approaches in image classification. Such approaches sample a reference dataset multiple times in order to train an arbitrary number of machine learning models while assessing their accuracy. So-called iterative accuracy assessment techniques or Monte-Carlo-based approaches can be a useful tool when it comes to assessment of algorithm/model performance but are lacking when it comes to actual image classification and map creation. Due to the multitude of models trained, one has to somehow reason which one of them, if any, should be used in the creation of a map. This poses an interesting challenge since there is a clear disconnect between algorithm assessment and the act of map creation. Our work shows one of the ways this disconnect can be bridged. We calculate how often a given pixel was classified as given class in all variations of a multitude of post-classification images delivered by models trained during the iterative assessment procedure. As a classification problem, a mapping of Calamagrostis epigejos, Rubus spp., Solidago spp. invasive plant species using three HySpex hyperspectral datasets collected in June, August and September was used. As a classification algorithm, the support vector machine approach was chosen, with training hyperparameters obtained using a grid search approach. The resulting maps obtained F1-scores ranging from 0.87 to 0.89 for Calamagrostis epigejos, 0.89 to 0.97 for Rubus spp. and 0.99 for Solidago spp.

The Use of an Unmanned Aerial Vehicle for Tree Phenotyping Studies

A strip of 20th-century landscape woodland planted alongside a 17th to mid-18th century ancient and semi-natural woodland (ASNW) was investigated by applied aerial spectroscopy using an unmanned aerial vehicle (UAV) with a multispectral image camera (MSI). A simple classification approach of normalized difference spectral index (NDSI), derived using principal component analysis (PCA), enabled the identification of the non-native trees within the 20th-century boundary. The tree species within this boundary, classified by NDSI, were further segmented by the machine learning segmentation method of k-means clustering. This combined innovative approach has enabled the identification of multiple tree species in the 20th-century boundary. Phenotyping of trees at canopy level using the UAV with MSI, across 8052 m2, identified black pine (23%), Norway maple (19%), Scots pine (12%), and sycamore (19%) as well as native trees (oak and silver birch, 27%). This derived data was corroborated by field identification at ground-level, over an area of 6785 m2, that confirmed the presence of black pine (26%), Norway maple (30%), Scots pine (10%), and sycamore (14%) as well as other trees (oak and silver birch, 20%). The benefits of using a UAV, with an MSI camera, for monitoring tree boundaries next to a new housing development are demonstrated.

Delineating Smallholder Maize Farms from Sentinel-1 Coupled with Sentinel-2 Data Using Machine Learning

Rural communities rely on smallholder maize farms for subsistence agriculture, the main driver of local economic activity and food security. However, their planted area estimates are unknown in most developing countries. This study explores the use of Sentinel-1 and Sentinel-2 data to map smallholder maize farms. The random forest (RF), support vector (SVM) machine learning algorithms and model stacking (ST) were applied. Results show that the classification of combined Sentinel-1 and Sentinel-2 data improved the RF, SVM and ST algorithms by 24.2%, 8.7%, and 9.1%, respectively, compared to the classification of Sentinel-1 data individually. Similarities in the estimated areas (7001.35 ± 1.2 ha for RF, 7926.03 ± 0.7 ha for SVM and 7099.59 ± 0.8 ha for ST) show that machine learning can estimate smallholder maize areas with high accuracies. The study concludes that the single-date Sentinel-1 data were insufficient to map smallholder maize farms. However, single-date Sentinel-1 combined with Sentinel-2 data were sufficient in mapping smallholder farms. These results can be used to support the generation and validation of national crop statistics, thus contributing to food security.

Monitoring Invasive Plant Species Using Hyperspectral Remote Sensing Data

The species richness and biodiversity of vegetation in Hungary are increasingly threatened by invasive plant species brought in from other continents and foreign ecosystems. These invasive plant species have spread aggressively in the natural and semi-natural habitats of Europe. Common milkweed (Asclepias syriaca) is one of the species that pose the greatest ecological menace. Therefore, the primary purpose of the present study is to map and monitor the spread of common milkweed, the most common invasive plant species in Europe. Furthermore, the possibilities to detect and validate this special invasive plant by analyzing hyperspectral remote sensing data were investigated. In combination with field reference data, high-resolution hyperspectral aerial images acquired by an unmanned aerial vehicle (UAV) platform in 138 spectral bands in areas infected by common milkweed were examined. Then, support vector machine (SVM) and artificial neural network (ANN) classification algorithms were applied to the highly accurate field reference data. As a result, common milkweed individuals were distinguished in hyperspectral images, achieving an overall accuracy of 92.95% in the case of supervised SVM classification. Using the ANN model, an overall accuracy of 99.61% was achieved. To evaluate the proposed approach, two experimental tests were conducted, and in both cases, we managed to distinguish the individual specimens within the large variety of spreading invasive species in a study area of 2 ha, based on centimeter spatial resolution hyperspectral UAV imagery.

Advanced Machine Learning in Point Spectroscopy, RGB- and Hyperspectral-Imaging for Automatic Discriminations of Crops and Weeds: A Review

Crop productivity is readily reduced by competition from weeds. It is particularly important to control weeds early to prevent yield losses. Limited herbicide choices and increasing costs of weed management are threatening the profitability of crops. Smart agriculture can use intelligent technology to accurately measure the distribution of weeds in the field and perform weed control tasks in selected areas, which cannot only improve the effectiveness of pesticides, but also increase the economic benefits of agricultural products. The most important thing for an automatic system to remove weeds within crop rows is to utilize reliable sensing technology to achieve accurate differentiation of weeds and crops at specific locations in the field. In recent years, there have been many significant achievements involving the differentiation of crops and weeds. These studies are related to the development of rapid and non-destructive sensors, as well as the analysis methods for the data obtained. This paper presents a review of the use of three sensing methods including spectroscopy, color imaging, and hyperspectral imaging in the discrimination of crops and weeds. Several algorithms of machine learning have been employed for data analysis such as convolutional neural network (CNN), artificial neural network (ANN), and support vector machine (SVM). Successful applications include the weed detection in grain crops (such as maize, wheat, and soybean), vegetable crops (such as tomato, lettuce, and radish), and fiber crops (such as cotton) with unsupervised or supervised learning. This review gives a brief introduction into proposed sensing and machine learning methods, then provides an overview of instructive examples of these techniques for weed/crop discrimination. The discussion describes the recent progress made in the development of automated technology for accurate plant identification as well as the challenges and future prospects. It is believed that this review is of great significance to those who study automatic plant care in crops using intelligent technology.

Mapping and Estimating Weeds in Cotton Using Unmanned Aerial Systems-Borne Imagery

In recent years, Unmanned Aerial Systems (UAS) have emerged as an innovative technology to provide spatio-temporal information about weed species in crop fields. Such information is a critical input for any site-specific weed management program. A multi-rotor UAS (Phantom 4) equipped with an RGB sensor was used to collect imagery in three bands (Red, Green, and Blue; 0.8 cm/pixel resolution) with the objectives of (a) mapping weeds in cotton and (b) determining the relationship between image-based weed coverage and ground-based weed densities. For weed mapping, three different weed density levels (high, medium, and low) were established for a mix of different weed species, with three replications. To determine weed densities through ground truthing, five quadrats (1 m × 1 m) were laid out in each plot. The aerial imageries were preprocessed and subjected to Hough transformation to delineate cotton rows. Following the separation of inter-row vegetation from crop rows, a multi-level classification coupled with machine learning algorithms were used to distinguish intra-row weeds from cotton. Overall, accuracy levels of 89.16%, 85.83%, and 83.33% and kappa values of 0.84, 0.79, and 0.75 were achieved for detecting weed occurrence in high, medium, and low density plots, respectively. Further, ground-truthing based overall weed density values were fairly correlated (r2 = 0.80) with image-based weed coverage assessments. Among the specific weed species evaluated, Palmer amaranth (Amaranthus palmeri S. Watson) showed the highest correlation (r2 = 0.91) followed by red sprangletop (Leptochloa mucronata Michx) (r2 = 0.88). The results highlight the utility of UAS-borne RGB imagery for weed mapping and density estimation in cotton for precision weed management.

Early Detection of Invasive Exotic Trees Using UAV and Manned Aircraft Multispectral and LiDAR Data

Exotic conifers can provide significant ecosystem services, but in some environments, they have become invasive and threaten indigenous ecosystems. In New Zealand, this phenomenon is of considerable concern as the area occupied by invasive exotic trees is large and increasing rapidly. Remote sensing methods offer a potential means of identifying and monitoring land infested by these trees, enabling managers to efficiently allocate resources for their control. In this study, we sought to develop methods for remote detection of exotic invasive trees, namely Pinus sylvestris and P. ponderosa. Critically, the study aimed to detect these species prior to the onset of maturity and coning as this is important for preventing further spread. In the study environment in New Zealand’s South Island, these species reach maturity and begin bearing cones at a young age. As such, detection of these smaller individuals requires specialist methods and very high-resolution remote sensing data. We examined the efficacy of classifiers developed using two machine learning algorithms with multispectral and laser scanning data collected from two platforms—manned aircraft and unmanned aerial vehicles (UAV). The study focused on a localized conifer invasion originating from a multi-species pine shelter belt in a grassland environment. This environment provided a useful means of defining the detection thresholds of the methods and technologies employed. An extensive field dataset including over 17,000 trees (height range = 1 cm to 476 cm) was used as an independent validation dataset for the detection methods developed. We found that data from both platforms and using both logistic regression and random forests for classification provided highly accurate (kappa < 0.996 ) detection of invasive conifers. Our analysis showed that the data from both UAV and manned aircraft was useful for detecting trees down to 1 m in height and therefore shorter than 99.3% of the coning individuals in the study dataset. We also explored the relative contribution of both multispectral and airborne laser scanning (ALS) data in the detection of invasive trees through fitting classification models with different combinations of predictors and found that the most useful models included data from both sensors. However, the combination of ALS and multispectral data did not significantly improve classification accuracy. We believe that this was due to the simplistic vegetation and terrain structure in the study site that resulted in uncomplicated separability of invasive conifers from other vegetation. This study provides valuable new knowledge of the efficacy of detecting invasive conifers prior to the onset of coning using high-resolution data from UAV and manned aircraft. This will be an important tool in managing the spread of these important invasive plants.

Using Airborne Hyperspectral Imaging Spectroscopy to Accurately Monitor Invasive and Expansive Herb Plants: Limitations and Requirements of the Method

Remote sensing (RS) is currently regarded as one of the standard tools used for mapping invasive and expansive plants for scientific purposes and it is increasingly widely used in nature conservation management. The applicability of RS methods is determined by its limitations and requirements. One of the most important limitations is the species percentage cover at which the classification result is correct and useful for nature conservation. The primary objective, carried out in 2017 in three areas of Poland, was to determine the minimum percentage cover from which it is possible to identify a target species by RS methods. A secondary objective of this research, related to the requirements of the method, was to optimize the set of training polygons for a target species in terms of the number of polygons and abundance percentage cover of the target species. Our method has to be easy to use, effective, and applicable, therefore the analysis was carried out using the basic set of rasters—the first 30 channels after the Minimum Noise Fraction (MNF) transformation (the mosaic of hyperspectral data from HySpex sensors with spectral range 0.4–2.5 µm) and commonly used Random Forest algorithm. The analysis used airborne hyperspectral data with a spatial resolution of 1 m to perform classification of one invasive and three expansive plants—two grasses and two large perennials. On-ground training and validation data sets were collected simultaneously with airborne data collection. When testing different classification scenarios, only the set of training polygons for a target species was changed. Classification results were evaluated based on three methods: accuracy measures (Kappa and F1), true-positive pixels in subclasses with different species cover and compatibility with field mapping. The classification results indicate that to classify the target plant species at the accepted level, the training dataset should contain polygons with a species cover ranging from 80–100%. Training performed only using polygons with a species characterized by a variable, but lower, cover (20–70%) and missing samples in the 80–100% range, led to a map which was not acceptable because of a high overestimation of target species. We achieved effective identification of species in areas where the species cover is above 50%, considering that ecosystems are heterogeneous. The results of these studies developed a methodology of field data acquisition and the necessity of synchronization in the acquisition of airborne data, and training and validation of on-ground sampling.

The utility of Sentinel-2 Vegetation Indices (VIs) and Sentinel-1 Synthetic Aperture Radar (SAR) for invasive alien species detection and mapping

The threat of invasive alien plant species is progressively becoming a serious global concern. Alien plant invasions adversely affect both ecological services and socio-economic systems. Hence, accurate detection and mapping of invasive alien species is valuable in mitigating adverse ecological and socio-economic effects. Recent advances in active and passive remote sensing technology have created new and cost-effective opportunities for the application of remote sensing to invasive species mapping. In this study, new generation Sentinel-2 (S2) optical imagery was compared to S2 derived Vegetation Indices (VIs) and S2 VIs fused with Sentinel-1 (S1) Synthetic Aperture Radar (SAR) imagery for detecting and mapping the American Bramble (Rubuscuneifolius). Fusion of S2 VIs and S1SAR imagery was conducted at pixel level and multi-class Support Vector Machine (SVM) image classification was used to determine the dominant land use land cover classes. Results indicated that S2 derived VIs were the most accurate (80%) in detecting and mapping Bramble, while fused S2 VIs and S1SAR were the least accurate (54%). Findings from this study suggest that the application of S2 VIs is more suitable for Bramble detection and mapping than the fused S2 VIs and S1SAR. The superior performance of S2 VIs highlights the value of the new generation S2 VIs for invasive alien species detection and mapping. Furthermore, this study recommends the use of freely available new generation satellite imagery for cost effective and timeous mapping of Bramble from surrounding native vegetation and other land use land cover types.

Invasive Shrub Mapping in an Urban Environment from Hyperspectral and LiDAR-Derived Attributes

Proactive management of invasive species in urban areas is critical to restricting their overall distribution. The objective of this work is to determine whether advanced remote sensing technologies can help to detect invasions effectively and efficiently in complex urban ecosystems such as parks. In Surrey, BC, Canada, Himalayan blackberry (Rubus armeniacus) and English ivy (Hedera helix) are two invasive shrub species that can negatively affect native ecosystems in cities and managed urban parks. Random forest (RF) models were created to detect these two species using a combination of hyperspectral imagery, and light detection and ranging (LiDAR) data. LiDAR-derived predictor variables included irradiance models, canopy structural characteristics, and orographic variables. RF detection accuracy ranged from 77.8 to 87.8% for Himalayan blackberry and 81.9 to 82.1% for English ivy, with open areas classified more accurately than areas under canopy cover. English ivy was predicted to occur across a greater area than Himalayan blackberry both within parks and across the entire city. Both Himalayan blackberry and English ivy were mostly located in clusters according to a Local Moran's I analysis. The occurrence of both species decreased as the distance from roads increased. This study shows the feasibility of producing highly accurate detection maps of plant invasions in urban environments using a fusion of remotely sensed data, as well as the ability to use these products to guide management decisions.