Evaluation of Continuous VNIR-SWIR Spectra versus Narrowband Hyperspectral Indices to Discriminate the Invasive Acacia longifolia within a Mediterranean Dune Ecosystem

Detecting and distinguishing between apicultural plants using UAV multispectral imaging

Detecting and distinguishing apicultural plants are important elements of the evaluation and quantification of potential honey production worldwide. Today, remote sensing can provide accurate plant distribution maps using rapid and efficient techniques. In the present study, a five-band multispectral unmanned aerial vehicle (UAV) was used in an established beekeeping area on Lemnos Island, Greece, for the collection of high-resolution images from three areas where Thymus capitatus and Sarcopoterium spinosum are present. Orthophotos of UAV bands for each area were used in combination with vegetation indices in the Google Earth Engine (GEE) platform, to classify the area occupied by the two plant species. From the five classifiers (Random Forest, RF; Gradient Tree Boost, GTB; Classification and Regression Trees, CART; Mahalanobis Minimum Distance, MMD; Support Vector Machine, SVM) in GEE, the RF gave the highest overall accuracy with a Kappa coefficient reaching 93.6%, 98.3%, 94.7%, and coefficient of 0.90, 0.97, 0.92 respectively for each case study. The training method used in the present study detected and distinguish the two plants with great accuracy and results were confirmed using 70% of the total score to train the GEE and 30% to assess the method's accuracy. Based on this study, identification and mapping of Thymus capitatus areas is possible and could help in the promotion and protection of this valuable species which, on many Greek Islands, is the sole foraging plant of honeybees.

Intra-Annual Sentinel-2 Time-Series Supporting Grassland Habitat Discrimination

The present study aims to discriminate four semi-arid grassland habitats in a Mediterranean Natura 2000 site, Southern Italy, involving 6210/E1.263, 62A0/E1.55, 6220/E1.434 and X/E1.61-E1.C2-E1.C4 (according to Annex I of the European Habitat Directive/EUropean Nature Information System (EUNIS) taxonomies). For this purpose, an intra-annual time-series of 30 Sentinel-2 images, embedding phenology information, were investigated for 2018. The methodology adopted was based on a two-stage workflow employing a Support Vector Machine classifier. In the first stage only four Sentinel-2 multi-season images were analyzed, to provide an updated land cover map from where the grassland layer was extracted. The layer obtained was then used for masking the input features to the second stage. The latter stage discriminated the four grassland habitats by analyzing several input features configurations. These included multiple spectral indices selected from the time-series and the Digital Terrain Model. The results obtained from the different input configurations selected were compared to evaluate if the phenology information from time-series could improve grassland habitats discrimination. The highest F1 values (95.25% and 80.27%) were achieved for 6210/E1.263 and 6220/E1.434, respectively, whereas the results remained stable (97,33%) for 62A0/E1.55 and quite low (75,97%) for X/E1.61-E1.C2-E1.C4. However, since for all the four habitats analyzed no single configuration resulted effective, a Majority Vote algorithm was applied to achieve a reduction in classification uncertainty.

Monitoring Invasive Plant Species Using Hyperspectral Remote Sensing Data

The species richness and biodiversity of vegetation in Hungary are increasingly threatened by invasive plant species brought in from other continents and foreign ecosystems. These invasive plant species have spread aggressively in the natural and semi-natural habitats of Europe. Common milkweed (Asclepias syriaca) is one of the species that pose the greatest ecological menace. Therefore, the primary purpose of the present study is to map and monitor the spread of common milkweed, the most common invasive plant species in Europe. Furthermore, the possibilities to detect and validate this special invasive plant by analyzing hyperspectral remote sensing data were investigated. In combination with field reference data, high-resolution hyperspectral aerial images acquired by an unmanned aerial vehicle (UAV) platform in 138 spectral bands in areas infected by common milkweed were examined. Then, support vector machine (SVM) and artificial neural network (ANN) classification algorithms were applied to the highly accurate field reference data. As a result, common milkweed individuals were distinguished in hyperspectral images, achieving an overall accuracy of 92.95% in the case of supervised SVM classification. Using the ANN model, an overall accuracy of 99.61% was achieved. To evaluate the proposed approach, two experimental tests were conducted, and in both cases, we managed to distinguish the individual specimens within the large variety of spreading invasive species in a study area of 2 ha, based on centimeter spatial resolution hyperspectral UAV imagery.

Optical Identification of Middle Ear Infection

Ear infection is one of the most commonly occurring inflammation diseases in the world, especially for children. Almost every child encounters at least one episode of ear infection before he/she reaches the age of seven. The typical treatment currently followed by physicians is visual inspection and antibiotic prescription. In most cases, a lack of improper treatment results in severe bacterial infection. Therefore, it is necessary to design and explore advanced practices for effective diagnosis. In this review paper, we present the various types of ear infection and the related pathogens responsible for middle ear infection. We outline the conventional techniques along with clinical trials using those techniques to detect ear infections. Further, we highlight the need for emerging techniques to reduce ear infection complications. Finally, we emphasize the utility of Raman spectroscopy as a prospective non-invasive technique for the identification of middle ear infection.

Scenario-based discrimination of common grapevine varieties using in-field hyperspectral data in the western of Iran

Field spectroscopy is an accurate, rapid and nondestructive technique for monitoring of agricultural plant characteristics. Among these, identification of grapevine varieties is one of the most important factors in viticulture and wine industry. This study evaluated the discriminatory ability of field hyperspectral data and statistical techniques in case of five common grapevine varieties in the western of Iran. A total of 3000 spectral samples were acquired at leaf and canopy levels. Then, in order to identify the best approach, two types of hyperspectral data (wavelengths from 350 to 2500 nm and 32 spectral indices), two data reduction methods (PLSR and ANOVA-PCA) and two classification algorithms (LDA and SVM) were applied in a total of 16 scenarios. Results showed that the grapevine varieties were discriminated with overall accuracy of 89.88%-100% in test sets. Among the data reduction methods, the combination of ANOVA and PCA yielded higher performance as opposed to PLSR. Accordingly, optimal wavelengths in discrimination of studied grapevine varieties were located in vicinity of 695, 752, 1148, 1606 nm and 582, 687, 1154, 1927 nm at leaf and canopy levels, respectively. Optimal spectral indices were R680, WI, SGB and RATIO975_2, DattA, Greenness at leaf and canopy levels, respectively. Also, the importance of spectral regions in discriminating studied grapevine varieties was ranked as near-infrared > mid-infrared and red edge region > visible. As a general conclusion, the canopyspectral indices-ANOVA-PCA-SVM scenario discriminated the studied species most accurately.

Across Date Species Detection Using Airborne Imaging Spectroscopy

Imaging spectroscopy is a promising tool for airborne tree species recognition in hyper-diverse tropical canopies. However, its widespread application is limited by the signal sensitivity to acquisition parameters, which may require new training data in every new area of application. This study explores how various pre-processing steps may improve species discrimination and species recognition under different operational settings. In the first experiment, a classifier was trained and applied on imaging spectroscopy data acquired on a single date, while in a second experiment, the classifier was trained on data from one date and applied to species identification on data from a different date. A radiative transfer model based on atmospheric compensation was applied with special focus on the automatic retrieval of aerosol amounts. The impact of spatial or spectral filtering and normalisation was explored as an alternative to atmospheric correction. A pixel-wise classification was performed with a linear discriminant analysis trained on individual tree crowns identified at the species level. Tree species were then identified at the crown scale based on a majority vote rule. Atmospheric corrections did not outperform simple statistical processing (i.e., filtering and normalisation) when training and testing sets were taken from the same flight date. However, atmospheric corrections became necessary for reliable species recognition when different dates were considered. Shadow masking improved species classification results in all cases. Single date classification rate was 83.9% for 1297 crowns of 20 tropical species. The loss of mean accuracy observed when using training data from one date to identify species at another date in the same area was limited to 10% when atmospheric correction was applied.

Managing plant invasions through the lens of remote sensing: A review of progress and the way forward

Biological invasions are a challenging driver of global environmental change and a fingerprint of the Anthropocene. Remote sensing has gradually become a fundamental tool for understanding invasion patterns, processes and impacts. Nevertheless, a quantitative overview of the progress and extent of remote sensing applications to the management of plant invasions is lacking. This overview is particularly necessary to support the development of more operational frameworks based on remote sensing that can effectively improve the management of invasions. Here, we evaluate and discuss the progress, current state and future opportunities of remote sensing for the research and management of plant invasions. Supported on a systematic literature review, our study shows that, since the 1970s, remote sensing was mainly used to map and identify invasive plants, evolving, around the mid-2000s, towards a tool for assessing invasion impacts. Although remote sensing studies often focus on detecting plant invaders at advanced invasion stages, they can also contribute to the prediction of early invasion stages and to the assessment of their impacts. Despite the growing awareness of technical limitations, remote sensing offers many opportunities to further improve the management of plant invasions. These opportunities relate to the capacity of remote sensing to: (a) detect and evaluate the extent of invasions, assisting on any management option aiming at mitigating plant invasions and their impacts; (b) consider modelling frameworks that anticipate future invasions, supporting the prevention and eradication at early invasion stages and protecting ecosystems and the services they provide; and (c) monitor changes in invasion dominance, as well as the resulting impacts, supporting mitigation, restoration and adaptation actions. Finally, we discuss the way forward to make remote sensing more effective in the scope of invasion management, considering current and future Earth observation missions.

Mapping the Flowering of an Invasive Plant Using Unmanned Aerial Vehicles: Is There Potential for Biocontrol Monitoring?

Invasion by alien species is a worldwide phenomenon with negative consequences at both natural and production areas. Acacia longifolia is an invasive shrub/small tree well known for its negative ecological impacts in several places around the world. The recent introduction of a biocontrol agent (Trichilogaster acaciaelongifoliae), an Australian bud-galling wasp which decreases flowering of A. longifolia, in Portugal, demands the development of a cost-efficient method to monitor its establishment. We tested how unmanned aerial vehicles (UAV) can be used to map A. longifolia flowering. Our core assumption is as the population of the biocontrol agent increases, its impacts on the reduction of A. longifolia flowering will be increasingly visible. Additionally, we tested if there is a simple linear correlation between the number of flowers of A. longifolia counted in field and the area covered by flowers in the UAV imagery. UAV imagery was acquired over seven coastal areas including frontal dunes, interior sand dunes and pine forests considering two phenological stages: peak and off-peak flowering season. The number of flowers of A. longifolia was counted, in a minimum of 60 1 m² quadrats per study area. For each study area, flower presence/absence maps were obtained using supervised Random Forest. The correlation between the number of flowers and the area covered by flowering plants could then be tested. The flowering of A. longifolia was mapped using UAV mounted with RGB and CIR Cannon IXUS/ELPH cameras (Overall Accuracy > 0.96; Cohen's Kappa > 0.85) varying according to habitat type and flowering season. The correlation between the number of flowers counted and the area covered by flowering was weak (r² between 0.0134 and 0.156). This is probably explained, at least partially, by the high variability of A. longifolia in what regards flowering morphology and distribution. The very high accuracy of our approach to map A. longifolia flowering proved to be cost efficient and replicable, showing great potential for detecting the future decrease in flowering promoted by the biocontrol agent. The attempt to provide a low-cost method to estimate A. longifolia flower productivity using UAV failed, but it provided valuable insights on the future steps.

Heterogeneous environments shape invader impacts: integrating environmental, structural and functional effects by isoscapes and remote sensing

Spatial heterogeneity of ecosystems crucially influences plant performance, while in return plant feedbacks on their environment may increase heterogeneous patterns. This is of particular relevance for exotic plant invaders that transform native ecosystems, yet, approaches integrating geospatial information of environmental heterogeneity and plant-plant interaction are lacking. Here, we combined remotely sensed information of site topography and vegetation cover with a functional tracer of the N cycle, δ15N. Based on the case study of the invasion of an N2-fixing acacia in a nutrient-poor dune ecosystem, we present the first model that can successfully predict (R 2 = 0.6) small-scale spatial variation of foliar δ15N in a non-fixing native species from observed geospatial data. Thereby, the generalized additive mixed model revealed modulating effects of heterogeneous environments on invader impacts. Hence, linking remote sensing techniques with tracers of biological processes will advance our understanding of the dynamics and functioning of spatially structured heterogeneous systems from small to large spatial scales.

Invasive Shrub Mapping in an Urban Environment from Hyperspectral and LiDAR-Derived Attributes

Proactive management of invasive species in urban areas is critical to restricting their overall distribution. The objective of this work is to determine whether advanced remote sensing technologies can help to detect invasions effectively and efficiently in complex urban ecosystems such as parks. In Surrey, BC, Canada, Himalayan blackberry (Rubus armeniacus) and English ivy (Hedera helix) are two invasive shrub species that can negatively affect native ecosystems in cities and managed urban parks. Random forest (RF) models were created to detect these two species using a combination of hyperspectral imagery, and light detection and ranging (LiDAR) data. LiDAR-derived predictor variables included irradiance models, canopy structural characteristics, and orographic variables. RF detection accuracy ranged from 77.8 to 87.8% for Himalayan blackberry and 81.9 to 82.1% for English ivy, with open areas classified more accurately than areas under canopy cover. English ivy was predicted to occur across a greater area than Himalayan blackberry both within parks and across the entire city. Both Himalayan blackberry and English ivy were mostly located in clusters according to a Local Moran's I analysis. The occurrence of both species decreased as the distance from roads increased. This study shows the feasibility of producing highly accurate detection maps of plant invasions in urban environments using a fusion of remotely sensed data, as well as the ability to use these products to guide management decisions.