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Barea-Sepúlveda M, Calle JLP, Ferreiro-González M, Palma M. Development of a Novel HS-GC/MS Method Using the Total Ion Spectra Combined with Machine Learning for the Intelligent and Automatic Evaluation of Food-Grade Paraffin Wax Odor Level. Foods 2024; 13:1352. [PMID: 38731723 PMCID: PMC11083247 DOI: 10.3390/foods13091352] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2024] [Revised: 04/24/2024] [Accepted: 04/25/2024] [Indexed: 05/13/2024] Open
Abstract
The intensity of the odor in food-grade paraffin waxes is a pivotal quality characteristic, with odor panel ratings currently serving as the primary criterion for its assessment. This study presents an innovative method for assessing odor intensity in food-grade paraffin waxes, employing headspace gas chromatography with mass spectrometry (HS/GC-MS) and integrating total ion spectra with advanced machine learning (ML) algorithms for enhanced detection and quantification. Optimization was conducted using Box-Behnken design and response surface methodology, ensuring precision with coefficients of variance below 9%. Analytical techniques, including hierarchical cluster analysis (HCA) and principal component analysis (PCA), efficiently categorized samples by odor intensity. The Gaussian support vector machine (SVM), random forest, partial least squares regression, and support vector regression (SVR) algorithms were evaluated for their efficacy in odor grade classification and quantification. Gaussian SVM emerged as superior in classification tasks, achieving 100% accuracy, while Gaussian SVR excelled in quantifying odor levels, with a coefficient of determination (R2) of 0.9667 and a root mean square error (RMSE) of 6.789. This approach offers a fast, reliable, robust, objective, and reproducible alternative to the current ASTM sensory panel assessments, leveraging the analytical capabilities of HS-GC/MS and the predictive power of ML for quality control in the petrochemical sector's food-grade paraffin waxes.
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Affiliation(s)
| | | | - Marta Ferreiro-González
- Department of Analytical Chemistry, Faculty of Sciences, University of Cadiz, Agri-Food Campus of International Excellence (ceiA3), IVAGRO, 11510 Puerto Real, Spain; (M.B.-S.); (J.L.P.C.); (M.P.)
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Borowik P, Dyshko V, Tarakowski R, Tkaczyk M, Okorski A, Oszako T. Analysis of the Response Signals of an Electronic Nose Sensor for Differentiation between Fusarium Species. SENSORS (BASEL, SWITZERLAND) 2023; 23:7907. [PMID: 37765964 PMCID: PMC10535949 DOI: 10.3390/s23187907] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/26/2023] [Revised: 09/12/2023] [Accepted: 09/14/2023] [Indexed: 09/29/2023]
Abstract
Fusarium is a genus of fungi found throughout the world. It includes many pathogenic species that produce toxins of agricultural importance. These fungi are also found in buildings and the toxins they spread can be harmful to humans. Distinguishing Fusarium species can be important for selecting effective preventive measures against their spread. A low-cost electronic nose applying six commercially available TGS-series gas sensors from Figaro Inc. was used in our research. Different modes of operation of the electronic nose were applied and compared, namely, gas adsorption and desorption, as well as modulation of the sensor's heating voltage. Classification models using the random forest technique were applied to differentiate between measured sample categories of four species: F. avenaceum, F. culmorum, F. greaminarum, and F. oxysporum. In our research, it was found that the mode of operation with modulation of the heating voltage had the advantage of collecting data from which features can be extracted, leading to the training of machine learning classification models with better performance compared to cases where the sensor's response to the change in composition of the measured gas was exploited. The optimization of the data collection time was investigated and led to the conclusion that the response of the sensor at the beginning of the heating voltage modulation provides the most useful information. For sensor operation in the mode of gas desorption/absorption (i.e., modulation of the gas composition), the optimal time of data collection was found to be longer.
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Affiliation(s)
- Piotr Borowik
- Faculty of Physics, Warsaw University of Technology, ul. Koszykowa 75, 00-662 Warszawa, Poland;
| | - Valentyna Dyshko
- Ukrainian Research Institute of Forestry and Forest Melioration Named after G. M. Vysotsky, 61024 Kharkiv, Ukraine;
| | - Rafał Tarakowski
- Faculty of Physics, Warsaw University of Technology, ul. Koszykowa 75, 00-662 Warszawa, Poland;
| | - Miłosz Tkaczyk
- Forest Protection Department, Forest Research Institute, ul. Braci Leśnej 3, 05-090 Sękocin Stary, Poland (T.O.)
| | - Adam Okorski
- Department of Entomology, Phytopathology and Molecular Diagnostics, Faculty of Agriculture and Forestry, University of Warmia and Mazury in Olsztyn, Pl. Łódzki 5, 10-727 Olsztyn, Poland;
| | - Tomasz Oszako
- Forest Protection Department, Forest Research Institute, ul. Braci Leśnej 3, 05-090 Sękocin Stary, Poland (T.O.)
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Piłat-Rożek M, Łazuka E, Majerek D, Szeląg B, Duda-Saternus S, Łagód G. Application of Machine Learning Methods for an Analysis of E-Nose Multidimensional Signals in Wastewater Treatment. SENSORS (BASEL, SWITZERLAND) 2023; 23:487. [PMID: 36617095 PMCID: PMC9824643 DOI: 10.3390/s23010487] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/20/2022] [Revised: 12/26/2022] [Accepted: 12/27/2022] [Indexed: 06/17/2023]
Abstract
The work represents a successful attempt to combine a gas sensors array with instrumentation (hardware), and machine learning methods as the basis for creating numerical codes (software), together constituting an electronic nose, to correct the classification of the various stages of the wastewater treatment process. To evaluate the multidimensional measurement derived from the gas sensors array, dimensionality reduction was performed using the t-SNE method, which (unlike the commonly used PCA method) preserves the local structure of the data by minimizing the Kullback-Leibler divergence between the two distributions with respect to the location of points on the map. The k-median method was used to evaluate the discretization potential of the collected multidimensional data. It showed that observations from different stages of the wastewater treatment process have varying chemical fingerprints. In the final stage of data analysis, a supervised machine learning method, in the form of a random forest, was used to classify observations based on the measurements from the sensors array. The quality of the resulting model was assessed based on several measures commonly used in classification tasks. All the measures used confirmed that the classification model perfectly assigned classes to the observations from the test set, which also confirmed the absence of model overfitting.
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Affiliation(s)
- Magdalena Piłat-Rożek
- Faculty of Technology Fundamentals, Lublin University of Technology, 20-618 Lublin, Poland
| | - Ewa Łazuka
- Faculty of Technology Fundamentals, Lublin University of Technology, 20-618 Lublin, Poland
| | - Dariusz Majerek
- Faculty of Technology Fundamentals, Lublin University of Technology, 20-618 Lublin, Poland
| | - Bartosz Szeląg
- Faculty of Environmental, Geomatic and Energy Engineering, Kielce University of Technology, 25-314 Kielce, Poland
| | | | - Grzegorz Łagód
- Faculty of Environmental Engineering, Lublin University of Technology, 20-618 Lublin, Poland
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Calle JLP, Falatová B, Aliaño-González MJ, Ferreiro-González M, Palma M. Machine learning approaches over ion mobility spectra for the discrimination of ignitable liquids residues from interfering substrates. TALANTA OPEN 2022. [DOI: 10.1016/j.talo.2022.100125] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022] Open
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Astuti SD, Isyrofie AIFA, Nashichah R, Kashif M, Mujiwati T, Susilo Y, Winarno, Syahrom A. Gas Array Sensors based on Electronic Nose for Detection of Tuna ( Euthynnus Affinis) Contaminated by Pseudomonas Aeruginosa. JOURNAL OF MEDICAL SIGNALS & SENSORS 2022; 12:306-316. [PMID: 36726418 PMCID: PMC9885512 DOI: 10.4103/jmss.jmss_139_21] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2021] [Revised: 11/07/2021] [Accepted: 12/09/2021] [Indexed: 02/03/2023]
Abstract
Background Fish is a food ingredient that is consumed throughout the world. When fishes die, their freshness begins to decrease. The freshness of the fish can be determined by the aroma it produces. The purpose of this study is to monitor the odor of fish using a collection of gas sensors that can detect distinct odors. Methods The sensor was tested with three kinds of samples, namely Pseudomonas aeruginosa, tuna, and tuna that was contaminated with P. aeruginosa bacteria. During the process of collecting sensor data, all samples were placed in a vacuum so that the gas or aroma produced was not contaminated with other aromas. Eight sensors were used which were designed and implemented in an electronic nose (E-nose) device that can withstand aroma. The data collection process was carried out for 48 h, with an interval of 6 h for each data collection. Data processing was performed by using the principal component analysis and support vector machine (SVM) methods to obtain a plot score visualization and classification and to determine the aroma pattern of the fish. Results The results of this study indicate that the E-nose system is able to smell fish based on the hour with 95% of the cumulative variance of the main component in the classification test between fresh tuna and tuna fish contaminated with P. aeruginosa. Conclusion The SVM classifier was able to classify the healthy and unhealthy fish with an accuracy of 99%. The sensors that provided the highest response are the TGS 825 and TGS 826 sensors.
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Affiliation(s)
- Suryani Dyah Astuti
- Forensic Sciences Studies Research Group, Magister of Forensic, Post Graduate School, Airlangga University, Johor, Malaysia,Address for correspondence: Dr. Suryani Dyah Astuti, Campus C Jl. Mulyorejo, Surabaya, Indonesia. E-mail:
| | - Achmad Ilham Fanany Al Isyrofie
- Department of Physics, Magister of Biomedical Engineering, Faculty of Science and Technology, Airlangga University, Johor, Malaysia
| | - Roichatun Nashichah
- Department of Physics, Magister of Biomedical Engineering, Faculty of Science and Technology, Airlangga University, Johor, Malaysia
| | - Muhammad Kashif
- Department of Physics, Magister of Biomedical Engineering, Faculty of Science and Technology, Airlangga University, Johor, Malaysia
| | - Tri Mujiwati
- Department of Physics, Faculty of Science and Technology, Airlangga University, Johor, Malaysia
| | - Yunus Susilo
- Faculty of Engineering, Universitas Dr Soetomo, Surabaya, Indonesia
| | - Winarno
- Department of Physics, Faculty of Science and Technology, Airlangga University, Johor, Malaysia
| | - Ardiyansyah Syahrom
- Medical Devices and Technology Centre, Universiti Teknologi Malaysia, Johor, Malaysia
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Li D, Hu J, Zhang L, Li L, Yin Q, Shi J, Guo H, Zhang Y, Zhuang P. Deep learning and machine intelligence: New computational modeling techniques for discovery of the combination rules and pharmacodynamic characteristics of Traditional Chinese Medicine. Eur J Pharmacol 2022; 933:175260. [PMID: 36116517 DOI: 10.1016/j.ejphar.2022.175260] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2022] [Revised: 08/15/2022] [Accepted: 09/05/2022] [Indexed: 11/19/2022]
Abstract
It has been increasingly accepted that Multi-Ingredient-Based interventions provide advantages over single-target therapy for complex diseases. With the growing development of Traditional Chinese Medicine (TCM) and continually being refined of a holistic view, "multi-target" and "multi-pathway" integration characteristics of which are being accepted. However, its effector substances, efficacy targets, especially the combination rules and mechanisms remain unclear, and more powerful strategies to interpret the synergy are urgently needed. Artificial intelligence (AI) and computer vision lead to a rapidly expanding in many fields, including diagnosis and treatment of TCM. AI technology significantly improves the reliability and accuracy of diagnostics, target screening, and new drug research. While all AI techniques are capable of matching models to biological big data, the specific methods are complex and varied. Retrieves literature by the keywords such as "artificial intelligence", "machine learning", "deep learning", "traditional Chinese medicine" and "Chinese medicine". Search the application of computer algorithms of TCM between 2000 and 2021 in PubMed, Web of Science, China National Knowledge Infrastructure (CNKI), Elsevier and Springer. This review concentrates on the application of computational in herb quality evaluation, drug target discovery, optimized compatibility and medical diagnoses of TCM. We describe the characteristics of biological data for which different AI techniques are applicable, and discuss some of the best data mining methods and the problems faced by deep learning and machine learning methods applied to Chinese medicine.
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Affiliation(s)
- Dongna Li
- State Key Laboratory of Component-based Chinese Medicine, Haihe Laboratory of Modern Chinese Medicine, Tianjin University of Traditional Chinese Medicine, Tianjin, 301617, China
| | - Jing Hu
- State Key Laboratory of Component-based Chinese Medicine, Haihe Laboratory of Modern Chinese Medicine, Tianjin University of Traditional Chinese Medicine, Tianjin, 301617, China
| | - Lin Zhang
- State Key Laboratory of Component-based Chinese Medicine, Haihe Laboratory of Modern Chinese Medicine, Tianjin University of Traditional Chinese Medicine, Tianjin, 301617, China
| | - Lili Li
- State Key Laboratory of Component-based Chinese Medicine, Haihe Laboratory of Modern Chinese Medicine, Tianjin University of Traditional Chinese Medicine, Tianjin, 301617, China
| | - Qingsheng Yin
- State Key Laboratory of Component-based Chinese Medicine, Haihe Laboratory of Modern Chinese Medicine, Tianjin University of Traditional Chinese Medicine, Tianjin, 301617, China
| | - Jiangwei Shi
- First Teaching Hospital of Tianjin University of Traditional Chinese Medicine, Tianjin, China; National Clinical Research Center for Chinese Medicine Acupuncture and Moxibustion, China
| | - Hong Guo
- State Key Laboratory of Component-based Chinese Medicine, Haihe Laboratory of Modern Chinese Medicine, Tianjin University of Traditional Chinese Medicine, Tianjin, 301617, China
| | - Yanjun Zhang
- State Key Laboratory of Component-based Chinese Medicine, Haihe Laboratory of Modern Chinese Medicine, Tianjin University of Traditional Chinese Medicine, Tianjin, 301617, China; First Teaching Hospital of Tianjin University of Traditional Chinese Medicine, Tianjin, China; National Clinical Research Center for Chinese Medicine Acupuncture and Moxibustion, China.
| | - Pengwei Zhuang
- State Key Laboratory of Component-based Chinese Medicine, Haihe Laboratory of Modern Chinese Medicine, Tianjin University of Traditional Chinese Medicine, Tianjin, 301617, China.
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Calle JLP, Barea-Sepúlveda M, Ruiz-Rodríguez A, Álvarez JÁ, Ferreiro-González M, Palma M. Rapid Detection and Quantification of Adulterants in Fruit Juices Using Machine Learning Tools and Spectroscopy Data. SENSORS (BASEL, SWITZERLAND) 2022; 22:3852. [PMID: 35632260 PMCID: PMC9145498 DOI: 10.3390/s22103852] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/27/2022] [Revised: 05/15/2022] [Accepted: 05/17/2022] [Indexed: 06/15/2023]
Abstract
Fruit juice production is one of the most important sectors in the beverage industry, and its adulteration by adding cheaper juices is very common. This study presents a methodology based on the combination of machine learning models and near-infrared spectroscopy for the detection and quantification of juice-to-juice adulteration. We evaluated 100% squeezed apple, pineapple, and orange juices, which were adulterated with grape juice at different percentages (5%, 10%, 15%, 20%, 30%, 40%, and 50%). The spectroscopic data have been combined with different machine learning tools to develop predictive models for the control of the juice quality. The use of non-supervised techniques, specifically model-based clustering, revealed a grouping trend of the samples depending on the type of juice. The use of supervised techniques such as random forest and linear discriminant analysis models has allowed for the detection of the adulterated samples with an accuracy of 98% in the test set. In addition, a Boruta algorithm was applied which selected 89 variables as significant for adulterant quantification, and support vector regression achieved a regression coefficient of 0.989 and a root mean squared error of 1.683 in the test set. These results show the suitability of the machine learning tools combined with spectroscopic data as a screening method for the quality control of fruit juices. In addition, a prototype application has been developed to share the models with other users and facilitate the detection and quantification of adulteration in juices.
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Affiliation(s)
- José Luis P. Calle
- Department of Analytical Chemistry, Faculty of Sciences, IVAGRO, CeiA3, University of Cadiz, 11510 Puerto Real, Spain; (J.L.P.C.); (M.B.-S.); (A.R.-R.); (M.P.)
| | - Marta Barea-Sepúlveda
- Department of Analytical Chemistry, Faculty of Sciences, IVAGRO, CeiA3, University of Cadiz, 11510 Puerto Real, Spain; (J.L.P.C.); (M.B.-S.); (A.R.-R.); (M.P.)
| | - Ana Ruiz-Rodríguez
- Department of Analytical Chemistry, Faculty of Sciences, IVAGRO, CeiA3, University of Cadiz, 11510 Puerto Real, Spain; (J.L.P.C.); (M.B.-S.); (A.R.-R.); (M.P.)
| | - José Ángel Álvarez
- Department of Physical Chemistry, Faculty of Sciences, INBIO, University of Cadiz, Apartado 40, 11510 Puerto Real, Spain;
| | - Marta Ferreiro-González
- Department of Analytical Chemistry, Faculty of Sciences, IVAGRO, CeiA3, University of Cadiz, 11510 Puerto Real, Spain; (J.L.P.C.); (M.B.-S.); (A.R.-R.); (M.P.)
| | - Miguel Palma
- Department of Analytical Chemistry, Faculty of Sciences, IVAGRO, CeiA3, University of Cadiz, 11510 Puerto Real, Spain; (J.L.P.C.); (M.B.-S.); (A.R.-R.); (M.P.)
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Comparison of different processing approaches by SVM and RF on HS-MS eNose and NIR Spectrometry data for the discrimination of gasoline samples. Microchem J 2022. [DOI: 10.1016/j.microc.2021.106893] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
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Celaya-Padilla JM, Villagrana-Bañuelos KE, Oropeza-Valdez JJ, Monárrez-Espino J, Castañeda-Delgado JE, Oostdam ASHV, Fernández-Ruiz JC, Ochoa-González F, Borrego JC, Enciso-Moreno JA, López JA, López-Hernández Y, Galván-Tejada CE. Kynurenine and Hemoglobin as Sex-Specific Variables in COVID-19 Patients: A Machine Learning and Genetic Algorithms Approach. Diagnostics (Basel) 2021; 11:2197. [PMID: 34943434 PMCID: PMC8700648 DOI: 10.3390/diagnostics11122197] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2021] [Revised: 11/21/2021] [Accepted: 11/21/2021] [Indexed: 11/16/2022] Open
Abstract
Differences in clinical manifestations, immune response, metabolic alterations, and outcomes (including disease severity and mortality) between men and women with COVID-19 have been reported since the pandemic outbreak, making it necessary to implement sex-specific biomarkers for disease diagnosis and treatment. This study aimed to identify sex-associated differences in COVID-19 patients by means of a genetic algorithm (GALGO) and machine learning, employing support vector machine (SVM) and logistic regression (LR) for the data analysis. Both algorithms identified kynurenine and hemoglobin as the most important variables to distinguish between men and women with COVID-19. LR and SVM identified C10:1, cough, and lysoPC a 14:0 to discriminate between men with COVID-19 from men without, with LR being the best model. In the case of women with COVID-19 vs. women without, SVM had a higher performance, and both models identified a higher number of variables, including 10:2, lysoPC a C26:0, lysoPC a C28:0, alpha-ketoglutaric acid, lactic acid, cough, fever, anosmia, and dysgeusia. Our results demonstrate that differences in sexes have implications in the diagnosis and outcome of the disease. Further, genetic and machine learning algorithms are useful tools to predict sex-associated differences in COVID-19.
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Affiliation(s)
- Jose M. Celaya-Padilla
- Unidad Académica de Ingeniería Eléctrica, Universidad Autónoma de Zacatecas, Jardín Juárez 147, Centro, Zacatecas 98000, Mexico; (J.M.C.-P.); (K.E.V.-B.)
| | - Karen E. Villagrana-Bañuelos
- Unidad Académica de Ingeniería Eléctrica, Universidad Autónoma de Zacatecas, Jardín Juárez 147, Centro, Zacatecas 98000, Mexico; (J.M.C.-P.); (K.E.V.-B.)
| | - Juan José Oropeza-Valdez
- Unidad de Investigación Biomédica de Zacatecas, Instituto Mexicano del Seguro Social, Centro, Zacatecas 98000, Mexico; (J.J.O.-V.); (J.E.C.-D.); (J.C.F.-R.); (F.O.-G.); (J.A.E.-M.)
| | - Joel Monárrez-Espino
- Department of Health Research, Christus Muguerza del Parque Hospital Chihuahua, University of Monterrey, San Pedro Garza García 66238, Mexico;
| | - Julio E. Castañeda-Delgado
- Unidad de Investigación Biomédica de Zacatecas, Instituto Mexicano del Seguro Social, Centro, Zacatecas 98000, Mexico; (J.J.O.-V.); (J.E.C.-D.); (J.C.F.-R.); (F.O.-G.); (J.A.E.-M.)
- Cátedras-CONACyT, Consejo Nacional de Ciencia y Tecnología, Ciudad de México 03940, Mexico
| | - Ana Sofía Herrera-Van Oostdam
- Doctorado en Ciencias Biomédicas Básicas, Centro de Investigación en Ciencias de la Salud y Biomedicina, Universidad Autónoma de San Luis Potosí, San Luis Potosí 78210, Mexico;
| | - Julio César Fernández-Ruiz
- Unidad de Investigación Biomédica de Zacatecas, Instituto Mexicano del Seguro Social, Centro, Zacatecas 98000, Mexico; (J.J.O.-V.); (J.E.C.-D.); (J.C.F.-R.); (F.O.-G.); (J.A.E.-M.)
| | - Fátima Ochoa-González
- Unidad de Investigación Biomédica de Zacatecas, Instituto Mexicano del Seguro Social, Centro, Zacatecas 98000, Mexico; (J.J.O.-V.); (J.E.C.-D.); (J.C.F.-R.); (F.O.-G.); (J.A.E.-M.)
- Área de Ciencias de la Salud, Universidad Autónoma de Zacatecas, Carretera Zacatecas–Guadalajara kilometro 6, Ejido la Escondida, Zacatecas 98160, Mexico
| | - Juan Carlos Borrego
- Departamento de Epidemiología, Hospital General de Zona #1 “Emilio Varela Luján”, Instituto Mexicano del Seguro Social, Centro, Zacatecas 98000, Mexico;
| | - Jose Antonio Enciso-Moreno
- Unidad de Investigación Biomédica de Zacatecas, Instituto Mexicano del Seguro Social, Centro, Zacatecas 98000, Mexico; (J.J.O.-V.); (J.E.C.-D.); (J.C.F.-R.); (F.O.-G.); (J.A.E.-M.)
| | - Jesús Adrián López
- Laboratorio de MicroRNAs y Cáncer, Unidad Académica de Ciencias Biológicas, Universidad Autónoma de Zacatecas, Zacatecas 98000, Mexico;
| | - Yamilé López-Hernández
- Cátedras-CONACyT, Consejo Nacional de Ciencia y Tecnología, Ciudad de México 03940, Mexico
- Metabolomics and Proteomics Laboratory, Autonomous University of Zacatecas, Zacatecas 98000, Mexico
| | - Carlos E. Galván-Tejada
- Unidad Académica de Ingeniería Eléctrica, Universidad Autónoma de Zacatecas, Jardín Juárez 147, Centro, Zacatecas 98000, Mexico; (J.M.C.-P.); (K.E.V.-B.)
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Pareek V, Chaudhury S. Deep learning-based gas identification and quantification with auto-tuning of hyper-parameters. Soft comput 2021. [DOI: 10.1007/s00500-021-06222-1] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Optimization of Electronic Nose Sensor Array for Tea Aroma Detecting Based on Correlation Coefficient and Cluster Analysis. CHEMOSENSORS 2021. [DOI: 10.3390/chemosensors9090266] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
The electronic nose system is widely used in tea aroma detecting, and the sensor array plays a fundamental role for obtaining good results. Here, a sensor array optimization (SAO) method based on correlation coefficient and cluster analysis (CA) is proposed. First, correlation coefficient and distinguishing performance value (DPV) are calculated to eliminate redundant sensors. Then, the sensor independence is obtained through cluster analysis and the number of sensors is confirmed. Finally, the optimized sensor array is constructed. According to the results of the proposed method, sensor array for green tea (LG), fried green tea (LF) and baked green tea (LB) are constructed, and validation experiments are carried out. The classification accuracy using methods of linear discriminant analysis (LDA) based on the average value (LDA-ave) combined with nearest-neighbor classifier (NNC) can almost reach 94.44~100%. When the proposed method is used to discriminate between various grades of West Lake Longjing tea, LF can show comparable performance to that of the German PEN2 electronic nose. The electronic nose SAO method proposed in this paper can effectively eliminate redundant sensors and improve the quality of original tea aroma data. With fewer sensors, the optimized sensor array contributes to the miniaturization and cost reduction of the electronic nose system.
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Cangialosi F, Bruno E, De Santis G. Application of Machine Learning for Fenceline Monitoring of Odor Classes and Concentrations at a Wastewater Treatment Plant. SENSORS 2021; 21:s21144716. [PMID: 34300455 PMCID: PMC8309642 DOI: 10.3390/s21144716] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/11/2021] [Revised: 07/06/2021] [Accepted: 07/08/2021] [Indexed: 11/16/2022]
Abstract
The development of low-cost sensors, the introduction of technical performance specifications, and increasingly effective machine learning algorithms for managing big data have led to a growing interest in the use of instrumental odor monitoring systems (IOMS) for odor measurements from industrial plants. The classification and quantification of odor concentration are the main goals of IOMS installed inside industrial plants in order to identify the most important odor sources and to assess whether the regulatory thresholds have been exceeded. This paper illustrates the use of two machine learning algorithms applied to the concurrent classification and quantification of odors. Random Forest was employed, which is a machine learning algorithm that thus far has not been used in the field of odor quantification and classification for complex industrial situations. Furthermore, the results were compared with commonly used algorithms in this field, such as artificial neural network (ANN), which was here employed in the form of a deep neural network. Both techniques were applied to the data collected from an IOMS installed for fenceline monitoring at a wastewater treatment plant. Cohen’s kappa and Normalized RMSE are used as specifical performance indicators for classification and regression: the indicators were calculated for the test dataset, and the results were compared with data in the literature obtained in contexts of similar complexity. A Cohen’s kappa of 97% was reached for the classification task, while the best Normalized RMSE, namely 4%, for the interval 20–2435 ouE/m3 was obtained with Random Forest.
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Nissim N, Dudaie M, Barnea I, Shaked NT. Real-Time Stain-Free Classification of Cancer Cells and Blood Cells Using Interferometric Phase Microscopy and Machine Learning. Cytometry A 2020; 99:511-523. [PMID: 32910546 DOI: 10.1002/cyto.a.24227] [Citation(s) in RCA: 31] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2020] [Revised: 07/29/2020] [Accepted: 09/07/2020] [Indexed: 12/14/2022]
Abstract
We present a method for real-time visualization and automatic processing for detection and classification of untreated cancer cells in blood during stain-free imaging flow cytometry using digital holographic microscopy and machine learning in throughput of 15 cells per second. As a preliminary model for circulating tumor cells in the blood, following an initial label-free rapid enrichment stage based on the cell size, we applied our holographic imaging approach, providing the quantitative optical thickness profiles of the cells during flow. We automatically classified primary and metastatic colon cancer cells, where the two types of cancer cells were isolated from the same individual, as well as four types of blood cells. We used low-coherence off-axis interferometric phase microscopy and a microfluidic channel to image cells during flow quantitatively. The acquired images were processed and classified based on their morphology and quantitative phase features during the cell flow. We achieved high accuracy of 92.56% for distinguishing between the cells, enabling further automatic enrichment and cancer-cell grading from blood. © 2020 International Society for Advancement of Cytometry.
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Affiliation(s)
- Noga Nissim
- Department of Biomedical Engineering, Faculty of Engineering, Tel Aviv University, Tel Aviv, Ramat Aviv, Israel
| | - Matan Dudaie
- Department of Biomedical Engineering, Faculty of Engineering, Tel Aviv University, Tel Aviv, Ramat Aviv, Israel
| | - Itay Barnea
- Department of Biomedical Engineering, Faculty of Engineering, Tel Aviv University, Tel Aviv, Ramat Aviv, Israel
| | - Natan T Shaked
- Department of Biomedical Engineering, Faculty of Engineering, Tel Aviv University, Tel Aviv, Ramat Aviv, Israel
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14
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Jiang W, Gao D. Five Typical Stenches Detection Using an Electronic Nose. SENSORS 2020; 20:s20092514. [PMID: 32365549 PMCID: PMC7248900 DOI: 10.3390/s20092514] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/24/2020] [Revised: 04/03/2020] [Accepted: 04/07/2020] [Indexed: 02/06/2023]
Abstract
This paper deals with the classification of stenches, which can stimulate olfactory organs to discomfort people and pollute the environment. In China, the triangle odor bag method, which only depends on the state of the panelist, is widely used in determining odor concentration. In this paper, we propose a stenches detection system composed of an electronic nose and machine learning algorithms to discriminate five typical stenches. These five chemicals producing stenches are 2-phenylethyl alcohol, isovaleric acid, methylcyclopentanone, γ-undecalactone, and 2-methylindole. We will use random forest, support vector machines, backpropagation neural network, principal components analysis (PCA), and linear discriminant analysis (LDA) in this paper. The result shows that LDA (support vector machine (SVM)) has better performance in detecting the stenches considered in this paper.
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15
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Abstract
In recent years, citizens’ attention towards air quality and pollution has increased significantly, and nowadays, odor pollution related to different industrial activities is recognized as a well-known environmental issue. For this reason, odors are subjected to control and regulation in many countries, and specific methods for odor measurement have been developed and standardized over the years. This paper, conceived within the H2020 D-NOSES project, summarizes odor measurement techniques, highlighting their applicability, advantages, and limits, with the aim of providing experienced as well as non-experienced users a useful tool that can be consulted in the management of specific odor problems for evaluating and identifying the most suitable approach. The paper also presents relevant examples of the application of the different methods discussed, thereby mainly referring to scientific articles published over the last 10 years.
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16
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A deep feature mining method of electronic nose sensor data for identifying beer olfactory information. J FOOD ENG 2019. [DOI: 10.1016/j.jfoodeng.2019.07.023] [Citation(s) in RCA: 38] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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17
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Quantitative and Qualitative Analysis of Multicomponent Gas Using Sensor Array. SENSORS 2019; 19:s19183917. [PMID: 31514381 PMCID: PMC6767133 DOI: 10.3390/s19183917] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/03/2019] [Revised: 08/27/2019] [Accepted: 09/09/2019] [Indexed: 12/22/2022]
Abstract
The gas sensor array has long been a major tool for measuring gas due to its high sensitivity, quick response, and low power consumption. This goal, however, faces a difficult challenge because of the cross-sensitivity of the gas sensor. This paper presents a novel gas mixture analysis method for gas sensor array applications. The features extracted from the raw data utilizing principal component analysis (PCA) were used to complete random forest (RF) modeling, which enabled qualitative identification. Support vector regression (SVR), optimized by the particle swarm optimization (PSO) algorithm, was used to select hyperparameters C and γ to establish the optimal regression model for the purpose of quantitative analysis. Utilizing the dataset, we evaluated the effectiveness of our approach. Compared with logistic regression (LR) and support vector machine (SVM), the average recognition rate of PCA combined with RF was the highest (97%). The fitting effect of SVR optimized by PSO for gas concentration was better than that of SVR and solved the problem of hyperparameters selection.
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18
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Wang D, Xie L, Yang SX, Tian F. Support Vector Machine Optimized by Genetic Algorithm for Data Analysis of Near-Infrared Spectroscopy Sensors. SENSORS (BASEL, SWITZERLAND) 2018; 18:E3222. [PMID: 30257420 PMCID: PMC6210373 DOI: 10.3390/s18103222] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/20/2018] [Revised: 09/14/2018] [Accepted: 09/20/2018] [Indexed: 01/07/2023]
Abstract
Near-infrared (NIR) spectral sensors deliver the spectral response of the light absorbed by materials for quantification, qualification or identification. Spectral analysis technology based on the NIR sensor has been a useful tool for complex information processing and high precision identification in the tobacco industry. In this paper, a novel method based on the support vector machine (SVM) is proposed to discriminate the tobacco cultivation region using the near-infrared (NIR) sensors, where the genetic algorithm (GA) is employed for input subset selection to identify the effective principal components (PCs) for the SVM model. With the same number of PCs as the inputs to the SVM model, a number of comparative experiments were conducted between the effective PCs selected by GA and the PCs orderly starting from the first one. The model performance was evaluated in terms of prediction accuracy and four parameters of assessment criteria (true positive rate, true negative rate, positive predictive value and F1 score). From the results, it is interesting to find that some PCs with less information may contribute more to the cultivation regions and are considered as more effective PCs, and the SVM model with the effective PCs selected by GA has a superior discrimination capacity. The proposed GA-SVM model can effectively learn the relationship between tobacco cultivation regions and tobacco NIR sensor data.
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Affiliation(s)
- Di Wang
- College of Communications Engineering, Chongqing University, Chongqing 400044, China.
- School of Engineering, University of Guelph, Guelph, ON N1G 2W1, Canada.
| | - Lin Xie
- School of Engineering, University of Guelph, Guelph, ON N1G 2W1, Canada.
| | - Simon X Yang
- School of Engineering, University of Guelph, Guelph, ON N1G 2W1, Canada.
| | - Fengchun Tian
- College of Communications Engineering, Chongqing University, Chongqing 400044, China.
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19
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Guo W, Kong H, Wu J, Gan F. Odor Discrimination by Similarity Measures of Abstract Odor Factor Maps from Electronic Noses. SENSORS (BASEL, SWITZERLAND) 2018; 18:E2658. [PMID: 30104514 PMCID: PMC6111723 DOI: 10.3390/s18082658] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/23/2018] [Revised: 08/06/2018] [Accepted: 08/07/2018] [Indexed: 11/16/2022]
Abstract
The aim of this study is to improve the discrimination performance of electronic noses by introducing a new method for measuring the similarity of the signals obtained from the electronic nose. We constructed abstract odor factor maps (AOFMs) as the characteristic maps of odor samples by decomposition of three-way signal data array of an electronic nose. A similarity measure for two-way data was introduced to evaluate the similarities and differences of AOFMs from different samples. The method was assessed by three types of pipe and powder tobacco samples. Comparisons were made with other techniques based on PCA, SIMCA, PARAFAC and PARAFAC2. The results showed that our method had significant advantages in discriminating odor samples with similar flavors or with high VOCs release.
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Affiliation(s)
- Weiqing Guo
- School of Chemistry, Sun Yat-Sen University, Guangzhou 510275, China.
| | - Haohui Kong
- Technology Center, China Tobacco Guangdong Industrial Co., Ltd., Guangzhou 510385, China.
| | - Junzhang Wu
- Technology Center, China Tobacco Guangdong Industrial Co., Ltd., Guangzhou 510385, China.
| | - Feng Gan
- School of Chemistry, Sun Yat-Sen University, Guangzhou 510275, China.
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Force Trends and Pulsatility for Catheter Contact Identification in Intracardiac Electrograms during Arrhythmia Ablation. SENSORS 2018; 18:s18051399. [PMID: 29724033 PMCID: PMC5981834 DOI: 10.3390/s18051399] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/19/2018] [Revised: 04/25/2018] [Accepted: 04/28/2018] [Indexed: 01/28/2023]
Abstract
The intracardiac electrical activation maps are commonly used as a guide in the ablation of cardiac arrhythmias. The use of catheters with force sensors has been proposed in order to know if the electrode is in contact with the tissue during the registration of intracardiac electrograms (EGM). Although threshold criteria on force signals are often used to determine the catheter contact, this may be a limited criterion due to the complexity of the heart dynamics and cardiac vorticity. The present paper is devoted to determining the criteria and force signal profiles that guarantee the contact of the electrode with the tissue. In this study, we analyzed 1391 force signals and their associated EGM recorded during 2 and 8 s, respectively, in 17 patients (82 ± 60 points per patient). We aimed to establish a contact pattern by first visually examining and classifying the signals, according to their likely-contact joint profile and following the suggestions from experts in the doubtful cases. First, we used Principal Component Analysis to scrutinize the force signal dynamics by analyzing the main eigen-directions, first globally and then grouped according to the certainty of their tissue-catheter contact. Second, we used two different linear classifiers (Fisher discriminant and support vector machines) to identify the most relevant components of the previous signal models. We obtained three main types of eigenvectors, namely, pulsatile relevant, non-pulsatile relevant, and irrelevant components. The classifiers reached a moderate to sufficient discrimination capacity (areas under the curve between 0.84 and 0.95 depending on the contact certainty and on the classifier), which allowed us to analyze the relevant properties in the force signals. We conclude that the catheter-tissue contact profiles in force recordings are complex and do not depend only on the signal intensity being above a threshold at a single time instant, but also on time pulsatility and trends. These findings pave the way towards a subsystem which can be included in current intracardiac navigation systems assisted by force contact sensors, and it can provide the clinician with an estimate of the reliability on the tissue-catheter contact in the point-by-point EGM acquisition procedure.
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