A Feasibility Study on the Use of a Structured Light Depth-Camera for Three-Dimensional Body Measurements of Dairy Cows in Free-Stall Barns

Animal-based welfare indicators for dairy cows and their validity and practicality: a systematic review of the existing literature

Animal welfare is of increasing importance, with consumers preferring animal products made with ethical practices due to growing awareness. This shift highlights the need for reliable methods to evaluate welfare. This systematic review aims to assess the validity of current animal-based welfare indicators for dairy cows to aid farmers and agricultural professionals in evaluating and improving welfare amidst the lack of a clear legislative definition. The literature search spanned five databases: CAB Direct, PubMed, Scopus, Google Scholar and Livivo, covering publications in English and German from 2011 to 2021. Specific search terms were employed, and abstracts were screened for relevance. Publications were categorized based on exclusion criteria, with a final verification process conducted by three independent scientists. Research highlights correlations between welfare measures, farm characteristics and innovative indicators like hair cortisol concentration. Farming systems and housing methods significantly affect welfare, with pasture-based systems generally resulting in reduced lameness and improved behavior. Proper housing design and management practices are important, as they influence indicators like lameness and cleanliness. Heart rate variability and heart rate monitoring provide insights into dairy cow stress levels during milking and other stressors, making them valuable for welfare assessment. Biomarker research emphasizes the need to balance productivity and health in breeding strategies, as high milk production alone does not indicate good welfare. Behavioral studies and the human-animal relationship are key to understanding welfare. Precision Livestock Farming offers real-time assessment capabilities, although validation is needed. Stress physiology is complex, and while cortisol measurement methods are promising, further research is necessary. Assessment tools like the Animal Needs Index and routine herd data analysis are valuable for identifying welfare concerns. Key findings highlight the WQ® protocol's effectiveness and versatility, the challenge of its time demands, and the DCF protocol's promise for more practical and efficient welfare assessments. Commercial animal welfare audits should prioritize easily observable indicators and herd records due to logistical constraints in measuring biomarkers or heart rate variability. This focus on easily accessible indicators, such as body condition score, lameness, claw health, cleanliness, and somatic cell count allows effective welfare assessments, enabling prompt action to enhance wellbeing.

Calculating Volume of Pig Point Cloud Based on Improved Poisson Reconstruction

Pig point cloud data can be used to digitally reconstruct surface features, calculate pig body volume and estimate pig body weight. Volume, as a pig novel phenotype feature, has the following functions: (a) It can be used to estimate livestock weight based on its high correlation with body weight. (b) The volume proportion of various body parts (such as head, legs, etc.) can be obtained through point cloud segmentation, and the new phenotype information can be utilized for breeding pigs with smaller head volumes and stouter legs. However, as the pig point cloud has an irregular shape and may be partially missing, it is difficult to form a closed loop surface for volume calculation. Considering the better water tightness of Poisson reconstruction, this article adopts an improved Poisson reconstruction algorithm to reconstruct pig body point clouds, making the reconstruction results smoother, more continuous, and more complete. In the present study, standard shape point clouds, a known-volume Stanford rabbit standard model, a measured volume piglet model, and 479 sets of pig point cloud data with known body weight were adopted to confirm the accuracy and reliability of the improved Poisson reconstruction and volume calculation algorithm. Among them, the relative error was 4% in the piglet model volume result. The average absolute error was 2.664 kg in the weight estimation obtained from pig volume by collecting pig point clouds, and the average relative error was 2.478%. Concurrently, it was determined that the correlation coefficient between pig body volume and pig body weight was 0.95.

Evaluation of the application opportunities of precision livestock farming (PLF) for water buffalo (Bubalus bubalis) breeding: SWOT analysis

The use of technology in agriculture is increasing daily with the development of technology in all areas. With the help of PLF (precision livestock farming) technologies and efficient use of inputs, economic, environmentally friendly, and better-quality products are obtained. Significantly its use in dairy cattle is increasing daily, contributing to sustainable milk production in both economic and ecological terms. As the demand increased in the world for water buffalo meat, milk, and dairy products, different breeding systems have been applied for more and higher-quality production purposes. This way the number of water buffalo farms breeding in intensive conditions is increasing. It is necessary to investigate the possibilities of using PLF technologies, which are still widespread in dairy cattle, in water buffalo breeding, and to benefit from the advanced technology in this regard. This study aims to discuss the applicability of PLF technologies by surveying buffalo breeders. With the data obtained from the survey results made with the water buffalo breeders, the strengths, opportunities, threats, and effects of the weaknesses were discussed with the SWOT analysis.

Improving the Reliability of Scale-Free Image Morphometrics in Applications with Minimally Restrained Livestock Using Projective Geometry and Unsupervised Machine Learning

Advances in neural networks have garnered growing interest in applications of machine vision in livestock management, but simpler landmark-based approaches suitable for small, early stage exploratory studies still represent a critical stepping stone towards these more sophisticated analyses. While such approaches are well-validated for calibrated images, the practical limitations of such imaging systems restrict their applicability in working farm environments. The aim of this study was to validate novel algorithmic approaches to improving the reliability of scale-free image biometrics acquired from uncalibrated images of minimally restrained livestock. Using a database of 551 facial images acquired from 108 dairy cows, we demonstrate that, using a simple geometric projection-based approach to metric extraction, a priori knowledge may be leveraged to produce more intuitive and reliable morphometric measurements than conventional informationally complete Euclidean distance matrix analysis. Where uncontrolled variations in image annotation, camera position, and animal pose could not be fully controlled through the design of morphometrics, we further demonstrate how modern unsupervised machine learning tools may be used to leverage the systematic error structures created by such lurking variables in order to generate bias correction terms that may subsequently be used to improve the reliability of downstream statistical analyses and dimension reduction.

Body Condition Score Change throughout Lactation Utilizing an Automated BCS System: A Descriptive Study

Simple Summary

The aim of this study was to implement a commercially available automated body condition scoring (ABCS) camera system to collect data for developing a predictive equation of body condition dynamics throughout the lactation period. The body condition score can vary depending on many factors relative to a specific cow. Lactation number, DIM, disease status, and 305d-predicted-milk-yield (305PMY) were significant factors to create a multivariate prediction model for automatic body condition scores throughout lactation.

Abstract

Body condition scoring (BCS) is a traditional visual technique often using a five-point scale to non-invasively assess fat reserves in cattle. However, recent studies have highlighted the potential in automating body condition scoring using imaging technology. Therefore, the objective was to implement a commercially available automated body condition scoring (ABCS) camera system to collect data for developing a predictive equation of body condition dynamics throughout the lactation period. Holstein cows (n = 2343, parity = 2.1 ± 1.1, calving BCS = 3.42 ± 0.24), up to 300 days in milk (DIM), were scored daily using two ABCS cameras mounted on sort-gates at the milk parlor exits. Scores were reported on a 1 to 5 scale in 0.1 increments. Lactation number, DIM, disease status, and 305d-predicted-milk-yield (305PMY) were used to create a multivariate prediction model for body condition scores throughout lactation. The equation derived from the model was: ABCS_ijk = 1.4838 − 0.00452 × DIM_i − 0.03851 × Lactation number_j + 0.5970 × Calving ABCS_k + 0.02998 × Disease Status(neg)_l − 1.52 × 10⁻⁶ × 305PMY_m + e_ijklm. We identified factors which are significant for predicting the BCS curve during lactation. These could be used to monitor deviations or benchmark ABCS in lactating dairy cows. The advantage of BCS automation is that it may provide objective, frequent, and accurate BCS with a higher degree of sensitivity compared with more sporadic and subjective manual BCS. Applying ABCS technology in future studies on commercial dairies may assist in providing improved dairy management protocols based on more available BCS.

Contribution of Precision Livestock Farming Systems to the Improvement of Welfare Status and Productivity of Dairy Animals

Although the effects of human–dairy cattle interaction have been extensively examined, data concerning small ruminants are scarce. The present review article aims at highlighting the effects of management practices on the productivity, physiology and behaviour of dairy animals. In general, aversive handling is associated with a milk yield reduction and welfare impairment. Precision livestock farming systems have therefore been applied and have rapidly changed the management process with the introduction of technological and computer innovations that contribute to the minimization of animal disturbances, the promotion of good practices and the maintenance of cattle’s welfare status and milk production and farms’ sustainability and competitiveness at high levels. However, although dairy farmers acknowledge the advantages deriving from the application of precision livestock farming advancements, a reluctance concerning their regular application to small ruminants is observed, due to economic and cultural constraints and poor technological infrastructures. As a result, targeted intervention training programmes are also necessary in order to improve the efficacy and efficiency of handling, especially of small ruminants.

A Systematic Review of Automatic Health Monitoring in Calves: Glimpsing the Future From Current Practice

Infectious diseases, particularly bovine respiratory disease (BRD) and neonatal calf diarrhea (NCD), are prevalent in calves. Efficient health-monitoring tools to identify such diseases on time are lacking. Common practice (i.e., health checks) often identifies sick calves at a late stage of disease or not at all. Sensor technology enables the automatic and continuous monitoring of calf physiology or behavior, potentially offering timely and precise detection of sick calves. A systematic overview of automated disease detection in calves is still lacking. The objectives of this literature review were hence: to investigate previously applied sensor validation methods used in the context of calf health, to identify sensors used on calves, the parameters these sensors monitor, and the statistical tools applied to identify diseases, to explore potential research gaps and to point to future research opportunities. To achieve these objectives, systematic literature searches were conducted. We defined four stages in the development of health-monitoring systems: (1) sensor technique, (2) data interpretation, (3) information integration, and (4) decision support. Fifty-four articles were included (stage one: 26; stage two: 19; stage three: 9; and stage four: 0). Common parameters that assess the performance of these systems are sensitivity, specificity, accuracy, precision, and negative predictive value. Gold standards that typically assess these parameters include manual measurement and manual health-assessment protocols. At stage one, automatic feeding stations, accelerometers, infrared thermography cameras, microphones, and 3-D cameras are accurate in screening behavior and physiology in calves. At stage two, changes in feeding behaviors, lying, activity, or body temperature corresponded to changes in health status, and point to health issues earlier than manual health checks. At stage three, accelerometers, thermometers, and automatic feeding stations have been integrated into one system that was shown to be able to successfully detect diseases in calves, including BRD and NCD. We discuss these findings, look into potentials at stage four, and touch upon the topic of resilience, whereby health-monitoring system might be used to detect low resilience (i.e., prone to disease but clinically healthy calves), promoting further improvements in calf health and welfare.

3DPhenoFish: Application for two- and three-dimensional fish morphological phenotype extraction from point cloud analysis

Fish morphological phenotypes are important resources in artificial breeding, functional gene mapping, and population-based studies in aquaculture and ecology. Traditional morphological measurement of phenotypes is rather expensive in terms of time and labor. More importantly, manual measurement is highly dependent on operational experience, which can lead to subjective phenotyping results. Here, we developed 3DPhenoFish software to extract fish morphological phenotypes from three-dimensional (3D) point cloud data. Algorithms for background elimination, coordinate normalization, image segmentation, key point recognition, and phenotype extraction were developed and integrated into an intuitive user interface. Furthermore, 18 key points and traditional 2D morphological traits, along with 3D phenotypes, including area and volume, can be automatically obtained in a visualized manner. Intuitive fine-tuning of key points and customized definitions of phenotypes are also allowed in the software. Using 3DPhenoFish, we performed high-throughput phenotyping for four endemic Schizothoracinae species, including Schizopygopsis younghusbandi, Oxygymnocypris stewartii, Ptychobarbus dipogon, and Schizothorax oconnori. Results indicated that the morphological phenotypes from 3DPhenoFish exhibited high linear correlation (>0.94) with manual measurements and offered informative traits to discriminate samples of different species and even for different populations of the same species. In summary, we developed an efficient, accurate, and customizable tool, 3DPhenoFish, to extract morphological phenotypes from point cloud data, which should help overcome traditional challenges in manual measurements. 3DPhenoFish can be used for research on morphological phenotypes in fish, including functional gene mapping, artificial selection, and conservation studies. 3DPhenoFish is an open-source software and can be downloaded for free at https://github.com/lyh24k/3DPhenoFish/tree/master.

Welfare Health and Productivity in Commercial Pig Herds

In recent years, there have been very dynamic changes in both pork production and pig breeding technology around the world. The general trend of increasing the efficiency of pig production, with reduced employment, requires optimisation and a comprehensive approach to herd management. One of the most important elements on the way to achieving this goal is to maintain animal welfare and health. The health of the pigs on the farm is also a key aspect in production economics. The need to maintain a high health status of pig herds by eliminating the frequency of different disease units and reducing the need for antimicrobial substances is part of a broadly understood high potential herd management strategy. Thanks to the use of sensors (cameras, microphones, accelerometers, or radio-frequency identification transponders), the images, sounds, movements, and vital signs of animals are combined through algorithms and analysed for non-invasive monitoring of animals, which allows for early detection of diseases, improves their welfare, and increases the productivity of breeding. Automated, innovative early warning systems based on continuous monitoring of specific physiological (e.g., body temperature) and behavioural parameters can provide an alternative to direct diagnosis and visual assessment by the veterinarian or the herd keeper.

Challenges and Tendencies of Automatic Milking Systems (AMS): A 20-Years Systematic Review of Literature and Patents

Over the last two decades, the dairy industry has adopted the use of Automatic Milking Systems (AMS). AMS have the potential to increase the effectiveness of the milking process and sustain animal welfare. This study assessed the state of the art of research activities on AMS through a systematic review of scientific and industrial research. The papers and patents of the last 20 years (2000-2019) were analysed to assess the research tendencies. The words appearing in title, abstract and keywords of a total of 802 documents were processed with the text mining tool. Four clusters were identified (Components, Technology, Process and Animal). For each cluster, the words frequency analysis enabled us to identify the research tendencies and gaps. The results showed that focuses of the scientific and industrial research areas complementary, with scientific papers mainly dealing with topics related to animal and process, and patents giving priority to technology and components. Both scientific and industrial research converged on some crucial objectives, such as animal welfare, process sustainability and technological development. Despite the increasing interest in animal welfare, this review highlighted that further progress is needed to meet the consumers' demand. Moreover, milk yield is still regarded as more valuable compared to milk quality. Therefore, additional effort is necessary on the latter. At the process level, some gaps have been found related to cleaning operations, necessary to improve milk quality and animal health. The use of farm data and their incorporation on herd decision support systems (DSS) appeared optimal. The results presented in this review may be used as an overall assessment useful to address future research.

A Review: Development of Computer Vision-Based Lameness Detection for Dairy Cows and Discussion of the Practical Applications

The computer vision technique has been rapidly adopted in cow lameness detection research due to its noncontact characteristic and moderate price. This paper attempted to summarize the research progress of computer vision in the detection of lameness. Computer vision lameness detection systems are not popular on farms, and the accuracy and applicability still need to be improved. This paper discusses the problems and development prospects of this technique from three aspects: detection methods, verification methods and application implementation. The paper aims to provide the reader with a summary of the literature and the latest advances in the field of computer vision detection of lameness in dairy cows.

Automated Measurement of Heart Girth for Pigs Using Two Kinect Depth Sensors

The heart girth parameter is an important indicator reflecting the growth and development of pigs that provides critical guidance for the optimization of healthy pig breeding. To overcome the heavy workloads and poor adaptability of traditional measurement methods currently used in pig breeding, this paper proposes an automated pig heart girth measurement method using two Kinect depth sensors. First, a two-view pig depth image acquisition platform is established for data collection; the two-view point clouds after preprocessing are registered and fused by feature-based improved 4-Point Congruent Set (4PCS) method. Second, the fused point cloud is pose-normalized, and the axillary contour is used to automatically extract the heart girth measurement point. Finally, this point is taken as the starting point to intercept the circumferential perpendicular to the ground from the pig point cloud, and the complete heart girth point cloud is obtained by mirror symmetry. The heart girth is measured along this point cloud using the shortest path method. Using the proposed method, experiments were conducted on two-view data from 26 live pigs. The results showed that the heart girth measurement absolute errors were all less than 4.19 cm, and the average relative error was 2.14%, which indicating a high accuracy and efficiency of this method.

Recording behaviour of indoor-housed farm animals automatically using machine vision technology: A systematic review

Large-scale phenotyping of animal behaviour traits is time consuming and has led to increased demand for technologies that can automate these procedures. Automated tracking of animals has been successful in controlled laboratory settings, but recording from animals in large groups in highly variable farm settings presents challenges. The aim of this review is to provide a systematic overview of the advances that have occurred in automated, high throughput image detection of farm animal behavioural traits with welfare and production implications. Peer-reviewed publications written in English were reviewed systematically following Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) guidelines. After identification, screening, and assessment for eligibility, 108 publications met these specifications and were included for qualitative synthesis. Data collected from the papers included camera specifications, housing conditions, group size, algorithm details, procedures, and results. Most studies utilized standard digital colour video cameras for data collection, with increasing use of 3D cameras in papers published after 2013. Papers including pigs (across production stages) were the most common (n = 63). The most common behaviours recorded included activity level, area occupancy, aggression, gait scores, resource use, and posture. Our review revealed many overlaps in methods applied to analysing behaviour, and most studies started from scratch instead of building upon previous work. Training and validation sample sizes were generally small (mean±s.d. groups = 3.8±5.8) and in data collection and testing took place in relatively controlled environments. To advance our ability to automatically phenotype behaviour, future research should build upon existing knowledge and validate technology under commercial settings and publications should explicitly describe recording conditions in detail to allow studies to be reproduced.

Body Dimension Measurements of Qinchuan Cattle with Transfer Learning from LiDAR Sensing

For the time-consuming and stressful body measuring task of Qinchuan cattle and farmers, the demand for the automatic measurement of body dimensions has become more and more urgent. It is necessary to explore automatic measurements with deep learning to improve breeding efficiency and promote the development of industry. In this paper, a novel approach to measuring the body dimensions of live Qinchuan cattle with on transfer learning is proposed. Deep learning of the Kd-network was trained with classical three-dimensional (3D) point cloud datasets (PCD) of the ShapeNet datasets. After a series of processes of PCD sensed by the light detection and ranging (LiDAR) sensor, the cattle silhouettes could be extracted, which after augmentation could be applied as an input layer to the Kd-network. With the output of a convolutional layer of the trained deep model, the output layer of the deep model could be applied to pre-train the full connection network. The TrAdaBoost algorithm was employed to transfer the pre-trained convolutional layer and full connection of the deep model. To classify and recognize the PCD of the cattle silhouette, the average accuracy rate after training with transfer learning could reach up to 93.6%. On the basis of silhouette extraction, the candidate region of the feature surface shape could be extracted with mean curvature and Gaussian curvature. After the computation of the FPFH (fast point feature histogram) of the surface shape, the center of the feature surface could be recognized and the body dimensions of the cattle could finally be calculated. The experimental results showed that the comprehensive error of body dimensions was close to 2%, which could provide a feasible approach to the non-contact observations of the bodies of large physique livestock without any human intervention.

Risk Factors and Detection of Lameness Using Infrared Thermography in Dairy Cows – A Review

Lameness in dairy cows is a worldwide problem, usually a consequence of hoof diseases. Hoof problems have a negative impact on animal health and welfare as well as the economy of the farm. Prevention and early diagnosis of lameness should prevent the development of the disease and consequent high costs of animal treatment. In this review, the most common causes of both infectious and noninfectious lesions are described. Susceptibility to lesions is primarily influenced by the quality of the horn. The quality of the horn is influenced by internal and external conditions such as hygiene, nutrition, hormonal changes during calving and lactation, the animal’s age or genetic predisposition. The next part of this review summarizes the basic principles and possibilities of using infrared thermography in the early detection of lameness in dairy cows.

On-Barn Pig Weight Estimation Based on Body Measurements by Structure-from-Motion (SfM)

Information on the body shape of pigs is a key indicator to monitor their performance and health and to control or predict their market weight. Manual measurements are among the most common ways to obtain an indication of animal growth. However, this approach is laborious and difficult, and it may be stressful for both the pigs and the stockman. The present paper proposes the implementation of a Structure from Motion (SfM) photogrammetry approach as a new tool for on-barn animal reconstruction applications. This is possible also to new software tools allowing automatic estimation of camera parameters during the reconstruction process even without a preliminary calibration phase. An analysis on pig body 3D SfM characterization is here proposed, carried out under different conditions in terms of number of camera poses and animal movements. The work takes advantage of the total reconstructed surface as reference index to quantify the quality of the achieved 3D reconstruction, showing how as much as 80% of the total animal area can be characterized.

Non-Contact Body Measurement for Qinchuan Cattle with LiDAR Sensor

The body dimension measurement of large animals plays a significant role in quality improvement and genetic breeding, and the non-contact measurements by computer vision-based remote sensing could represent great progress in the case of dangerous stress responses and time-costing manual measurements. This paper presents a novel approach for three-dimensional digital modeling of live adult Qinchuan cattle for body size measurement. On the basis of capturing the original point data series of live cattle by a Light Detection and Ranging (LiDAR) sensor, the conditional, statistical outliers and voxel grid filtering methods are fused to cancel the background and outliers. After the segmentation of K-means clustering extraction and the RANdom SAmple Consensus (RANSAC) algorithm, the Fast Point Feature Histogram (FPFH) is put forward to get the cattle data automatically. The cattle surface is reconstructed to get the 3D cattle model using fast Iterative Closest Point (ICP) matching with Bi-directional Random K-D Trees and a Greedy Projection Triangulation (GPT) reconstruction method by which the feature points of cattle silhouettes could be clicked and calculated. Finally, the five body parameters (withers height, chest depth, back height, body length, and waist height) are measured in the field and verified within an accuracy of 2 mm and an error close to 2%. The experimental results show that this approach could be considered as a new feasible method towards the non-contact body measurement for large physique livestock.