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Wang H, Zhang J, Dong X, Wang T, Ma X, Wang J. Ambulatory ECG noise reduction algorithm for conditional diffusion model based on multi-kernel convolutional transformer. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2024; 95:095107. [PMID: 39248622 DOI: 10.1063/5.0222123] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/05/2024] [Accepted: 08/23/2024] [Indexed: 09/10/2024]
Abstract
Ambulatory electrocardiogram (ECG) testing plays a crucial role in the early detection, diagnosis, treatment evaluation, and prevention of cardiovascular diseases. Clear ECG signals are essential for the subsequent analysis of these conditions. However, ECG signals obtained during exercise are susceptible to various noise interferences, including electrode motion artifact, baseline wander, and muscle artifact. These interferences can blur the characteristic ECG waveforms, potentially leading to misjudgment by physicians. To suppress noise in ECG signals more effectively, this paper proposes a novel deep learning-based noise reduction method. This method enhances the diffusion model network by introducing conditional noise, designing a multi-kernel convolutional transformer network structure based on noise prediction, and integrating the diffusion model inverse process to achieve noise reduction. Experiments were conducted on the QT database and MIT-BIH Noise Stress Test Database and compared with the algorithms in other papers to verify the effectiveness of the present method. The results indicate that the proposed method achieves optimal noise reduction performance across both statistical and distance-based evaluation metrics as well as waveform visualization, surpassing eight other state-of-the-art methods. The network proposed in this paper demonstrates stable performance in addressing electrode motion artifact, baseline wander, muscle artifact, and the mixed complex noise of these three types, and it is anticipated to be applied in future noise reduction analysis of clinical dynamic ECG signals.
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Affiliation(s)
- Huiquan Wang
- School of Life Sciences, Tiangong University, Tianjin 300387, China
- Tianjin Key Laboratory of Quality Control and Evaluation Technology for Medical Devices, Tianjin 300384, China
| | - Juya Zhang
- School of Life Sciences, Tiangong University, Tianjin 300387, China
| | - Xinming Dong
- Tianjin Rehabilitation Convalescent Center, Tianjin 300191, China
| | - Tong Wang
- School of Life Sciences, Tiangong University, Tianjin 300387, China
| | - Xin Ma
- School of Computer Science and Technology, Tiangong University, Tianjin 300387, China
| | - Jinhai Wang
- School of Life Sciences, Tiangong University, Tianjin 300387, China
- Tianjin Key Laboratory of Quality Control and Evaluation Technology for Medical Devices, Tianjin 300384, China
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Li L, Zhang Y, Bai Y, Sun Y, Tong L, Fan B, Yang H, Li M, Wang Y, Wang F. A low-cost discrete Vis-NIR optical sensing method for the determination of pear internal blackheart. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2024; 304:123344. [PMID: 37678048 DOI: 10.1016/j.saa.2023.123344] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/14/2023] [Revised: 08/28/2023] [Accepted: 09/02/2023] [Indexed: 09/09/2023]
Abstract
In this study, a moldy crown pear core detection system based on a micro-optical sensor was developed. The micro-optical sensor has seven specific wavelengths, 425, 455, 515, 615, 660, 700, and 850 nm, and a cost-effective advantage. For the discrete spectrum, 7 kinds of preprocessing methods were compared. Traditional preprocessing methods, such as the standard normal transform (SNV) and multiple scattering correction (MSC) methods, cannot improve the efficiency of the spectrum. It was verified that the Savitzky - Golay (SG) convolution smoothing preprocessing method could be applied to preprocess discrete spectral data. The correlation of the spectrum after SG preprocessing in the partial least squares regression (PLSR) prediction model was 0.86, and the root mean square error (RMSE) was 0.19. Furthermore, the difference between the nonlinear modeling method without preprocessing and the PLS prediction model after preprocessing was compared. The results showed that the accuracy of the nonlinear modeling method for the discrete spectrum was much higher than that of the PLS linear modeling. The average model accuracy was above 0.9, and the k nearest neighbor (KNN) algorithm had the best effect, reaching an accuracy of 0.96. Finally, a prediction model accuracy of 0.98 was obtained by combining SG + KNN. In summary, the micro-optical sensor system had the advantages of low-cost performance and high precision, which are convenient for popularization and application in practice.
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Affiliation(s)
- Long Li
- Institute of Food Science and Technology, Chinese Academy of Agricultural Sciences, Beijing 100193, China; Weifang Institute of Food Science and Processing Technology, Weifang 261000, China; Sanya Institute, Hainan Academy of Agricultural Sciences, Sanya 572025, China.
| | - Yifan Zhang
- Institute of Food Science and Technology, Chinese Academy of Agricultural Sciences, Beijing 100193, China; Weifang Institute of Food Science and Processing Technology, Weifang 261000, China.
| | - Yajuan Bai
- Sanya Institute, Hainan Academy of Agricultural Sciences, Sanya 572025, China.
| | - Yufeng Sun
- Institute of Food Science and Technology, Chinese Academy of Agricultural Sciences, Beijing 100193, China.
| | - Litao Tong
- Institute of Food Science and Technology, Chinese Academy of Agricultural Sciences, Beijing 100193, China.
| | - Bei Fan
- Institute of Food Science and Technology, Chinese Academy of Agricultural Sciences, Beijing 100193, China.
| | - Huihui Yang
- Institute of Food Science and Technology, Chinese Academy of Agricultural Sciences, Beijing 100193, China; Weifang Institute of Food Science and Processing Technology, Weifang 261000, China.
| | - Minmin Li
- Institute of Food Science and Technology, Chinese Academy of Agricultural Sciences, Beijing 100193, China; Weifang Institute of Food Science and Processing Technology, Weifang 261000, China.
| | - Yutang Wang
- Weifang Institute of Food Science and Processing Technology, Weifang 261000, China.
| | - Fengzhong Wang
- Institute of Food Science and Technology, Chinese Academy of Agricultural Sciences, Beijing 100193, China; Sanya Institute, Hainan Academy of Agricultural Sciences, Sanya 572025, China.
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Swamy CP, Besheli BF, Branco LRF, Provenza NR, Sheth SA, Goodman WK, Viswanathan A, Ince NF. Pulsation artifact removal from intra-operatively recorded local field potentials using sparse signal processing and data-specific dictionary . ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2023; 2023:1-4. [PMID: 38082947 PMCID: PMC10746292 DOI: 10.1109/embc40787.2023.10340160] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/18/2023]
Abstract
Neural recordings frequently get contaminated by ECG or pulsation artifacts. These large amplitude components can mask the neural patterns of interest and make the visual inspection process difficult. The current study describes a sparse signal representation strategy that targets to denoise pulsation artifacts in local field potentials (LFPs) recorded intraoperatively. To estimate the morphology of the artifact, we first detect the QRS-peaks from the simultaneously recorded ECG trace as an anchor point. After the LFP data has been epoched with respect to each beat, a pool of raw data segments of a specific length is generated. Using the K-singular value decomposition (K-SVD) algorithm, we constructed a data-specific dictionary to represent each contaminated LFP epoch in a sparse fashion. Since LFP is aligned to each QRS complex and the background neural activity is uncorrelated to the anchor points, we assumed that constructed dictionary will be formed to mainly represent the pulsation artifact. In this scheme, we performed an orthogonal matching pursuit to represent each LFP epoch as a linear combination of the dictionary atoms. The denoised LFP data is thus obtained by calculating the residual between the raw LFP and its approximation. We discuss and demonstrate the improvements in denoised data and compare the results with respect to principal component analysis (PCA). We noted that there is a comparable change in the signal for visual inspection to observe various oscillating patterns in the alpha and beta bands. We also see a noticeable compression of signal strength in the lower frequency band (<13 Hz), which was masked by the pulsation artifact, and a strong increase in the signal-to-noise ratio (SNR) in the denoised data.Clinical Relevance- Pulsation artifact can mask relevant neural activity patterns and make their visual inspection difficult. Using sparse signal representation, we established a new approach to reconstruct the quasiperiodic pulsation template and computed the residue signal to achieve noise-free neural activity.
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Escalona O, Cullen N, Weli I, McCallan N, Ng KY, Finlay D. Robust Arm Impedocardiography Signal Quality Enhancement Using Recursive Signal Averaging and Multi-Stage Wavelet Denoising Methods for Long-Term Cardiac Contractility Monitoring Armbands. SENSORS (BASEL, SWITZERLAND) 2023; 23:5892. [PMID: 37447749 DOI: 10.3390/s23135892] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/28/2023] [Revised: 06/21/2023] [Accepted: 06/22/2023] [Indexed: 07/15/2023]
Abstract
Impedance cardiography (ICG) is a low-cost, non-invasive technique that enables the clinical assessment of haemodynamic parameters, such as cardiac output and stroke volume (SV). Conventional ICG recordings are taken from the patient's thorax. However, access to ICG vital signs from the upper-arm brachial artery (as an associated surrogate) can enable user-convenient wearable armband sensor devices to provide an attractive option for gathering ICG trend-based indicators of general health, which offers particular advantages in ambulatory long-term monitoring settings. This study considered the upper arm ICG and control Thorax-ICG recordings data from 15 healthy subject cases. A prefiltering stage included a third-order Savitzky-Golay finite impulse response (FIR) filter, which was applied to the raw ICG signals. Then, a multi-stage wavelet-based denoising strategy on a beat-by-beat (BbyB) basis, which was supported by a recursive signal-averaging optimal thresholding adaptation algorithm for Arm-ICG signals, was investigated for robust signal quality enhancement. The performance of the BbyB ICG denoising was evaluated for each case using a 700 ms frame centred on the heartbeat ICG pulse. This frame was extracted from a 600-beat ensemble signal-averaged ICG and was used as the noiseless signal reference vector (gold standard frame). Furthermore, in each subject case, enhanced Arm-ICG and Thorax-ICG above a threshold of correlation of 0.95 with the noiseless vector enabled the analysis of beat inclusion rate (BIR%), yielding an average of 80.9% for Arm-ICG and 100% for Thorax-ICG, and BbyB values of the ICG waveform feature metrics A, B, C and VET accuracy and precision, yielding respective error rates (ER%) of 0.83%, 11.1%, 3.99% and 5.2% for Arm-IG, and 0.41%, 3.82%, 1.66% and 1.25% for Thorax-ICG, respectively. Hence, the functional relationship between ICG metrics within and between the arm and thorax recording modes could be characterised and the linear regression (Arm-ICG vs. Thorax-ICG) trends could be analysed. Overall, it was found in this study that recursive averaging, set with a 36 ICG beats buffer size, was the best Arm-ICG BbyB denoising process, with an average of less than 3.3% in the Arm-ICG time metrics error rate. It was also found that the arm SV versus thorax SV had a linear regression coefficient of determination (R2) of 0.84.
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Affiliation(s)
- Omar Escalona
- School of Engineering, Ulster University, Belfast BT15 1AP, UK
| | - Nicole Cullen
- School of Engineering, Ulster University, Belfast BT15 1AP, UK
| | - Idongesit Weli
- School of Engineering, Ulster University, Belfast BT15 1AP, UK
| | - Niamh McCallan
- School of Engineering, Ulster University, Belfast BT15 1AP, UK
| | - Kok Yew Ng
- School of Engineering, Ulster University, Belfast BT15 1AP, UK
| | - Dewar Finlay
- School of Engineering, Ulster University, Belfast BT15 1AP, UK
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Mir HY, Singh O. ECG denoising and feature extraction techniques - a review. J Med Eng Technol 2021; 45:672-684. [PMID: 34463593 DOI: 10.1080/03091902.2021.1955032] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Abstract
The electrocardiogram (ECG) is a non-invasive approach for the recording of bioelectric signals generated by the heart which is used for the examination of the electro physical state, the function of the heart, and many cardiac diseases. However, various artefacts and measurement noise usually hinder providing accurate feature extraction such as power line interference, baseline wander, electromyographic noise (EMG) and electrode motion artefact. Therefore, for better analysis and interpretation ECG signals must be noise-free. Most recent and efficient techniques for ECG denoising and feature extraction techniques have been reviewed in this paper, as feature extraction and denoising of ECG are remarkably helpful in cardiology. This paper presents the review of contemporary signal processing techniques such as discrete wavelet transform (DWT), Empirical mode decomposition (EMD), Variational mode decomposition (VMD) and Empirical wavelet transform (EWT) for ECG signal denoising and feature extraction.
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Affiliation(s)
- Haroon Yousuf Mir
- Department of Electronics and Communication Engineering, National Institute of Technology Srinagar, Srinagar, J&K, India
| | - Omkar Singh
- Department of Electronics and Communication Engineering, National Institute of Technology Srinagar, Srinagar, J&K, India
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Zhang W, Yin L, Zhao M, Tan Z, Li G. Rapid and non-destructive quality verification of epoxy resin product using ATR-FTIR spectroscopy coupled with chemometric methods. Microchem J 2021. [DOI: 10.1016/j.microc.2021.106397] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Thammasan N, Stuldreher IV, Schreuders E, Giletta M, Brouwer AM. A Usability Study of Physiological Measurement in School Using Wearable Sensors. SENSORS (BASEL, SWITZERLAND) 2020; 20:E5380. [PMID: 32962191 PMCID: PMC7570846 DOI: 10.3390/s20185380] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/01/2020] [Revised: 09/15/2020] [Accepted: 09/17/2020] [Indexed: 12/13/2022]
Abstract
Measuring psychophysiological signals of adolescents using unobtrusive wearable sensors may contribute to understanding the development of emotional disorders. This study investigated the feasibility of measuring high quality physiological data and examined the validity of signal processing in a school setting. Among 86 adolescents, a total of more than 410 h of electrodermal activity (EDA) data were recorded using a wrist-worn sensor with gelled electrodes and over 370 h of heart rate data were recorded using a chest-strap sensor. The results support the feasibility of monitoring physiological signals at school. We describe specific challenges and provide recommendations for signal analysis, including dealing with invalid signals due to loose sensors, and quantization noise that can be caused by limitations in analog-to-digital conversion in wearable devices and be mistaken as physiological responses. Importantly, our results show that using toolboxes for automatic signal preprocessing, decomposition, and artifact detection with default parameters while neglecting differences between devices and measurement contexts yield misleading results. Time courses of students' physiological signals throughout the course of a class were found to be clearer after applying our proposed preprocessing steps.
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Affiliation(s)
- Nattapong Thammasan
- Human Media Interaction, Faculty of Electrical Engineering, Mathematics and Computer Science, University of Twente, 7522 NB Enschede, The Netherlands;
| | - Ivo V. Stuldreher
- Human Media Interaction, Faculty of Electrical Engineering, Mathematics and Computer Science, University of Twente, 7522 NB Enschede, The Netherlands;
- Perceptual and Cognitive Systems, The Netherlands Organisation for Applied Scientific Research (TNO), 3769 DE Soesterberg, The Netherlands;
| | - Elisabeth Schreuders
- Department Developmental Psychology, Institute of Psychology, Tilburg University, 5000 LE Tilburg, The Netherlands; (E.S.); (M.G.)
| | - Matteo Giletta
- Department Developmental Psychology, Institute of Psychology, Tilburg University, 5000 LE Tilburg, The Netherlands; (E.S.); (M.G.)
- Department of Developmental, Personality and Social Psychology, Faculty of Psychology and Educational Sciences, Ghent University, 9000 Ghent, Belgium
| | - Anne-Marie Brouwer
- Perceptual and Cognitive Systems, The Netherlands Organisation for Applied Scientific Research (TNO), 3769 DE Soesterberg, The Netherlands;
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