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Zhu W, Lee SJ. Similarity-Driven Fine-Tuning Methods for Regularization Parameter Optimization in PET Image Reconstruction. SENSORS (BASEL, SWITZERLAND) 2023; 23:5783. [PMID: 37447633 DOI: 10.3390/s23135783] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/08/2023] [Revised: 06/18/2023] [Accepted: 06/19/2023] [Indexed: 07/15/2023]
Abstract
We present an adaptive method for fine-tuning hyperparameters in edge-preserving regularization for PET image reconstruction. For edge-preserving regularization, in addition to the smoothing parameter that balances data fidelity and regularization, one or more control parameters are typically incorporated to adjust the sensitivity of edge preservation by modifying the shape of the penalty function. Although there have been efforts to develop automated methods for tuning the hyperparameters in regularized PET reconstruction, the majority of these methods primarily focus on the smoothing parameter. However, it is challenging to obtain high-quality images without appropriately selecting the control parameters that adjust the edge preservation sensitivity. In this work, we propose a method to precisely tune the hyperparameters, which are initially set with a fixed value for the entire image, either manually or using an automated approach. Our core strategy involves adaptively adjusting the control parameter at each pixel, taking into account the degree of patch similarities calculated from the previous iteration within the pixel's neighborhood that is being updated. This approach allows our new method to integrate with a wide range of existing parameter-tuning techniques for edge-preserving regularization. Experimental results demonstrate that our proposed method effectively enhances the overall reconstruction accuracy across multiple image quality metrics, including peak signal-to-noise ratio, structural similarity, visual information fidelity, mean absolute error, root-mean-square error, and mean percentage error.
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Affiliation(s)
- Wen Zhu
- Department of Electrical and Electronic Engineering, Pai Chai University, Daejeon 35345, Republic of Korea
| | - Soo-Jin Lee
- Department of Electrical and Electronic Engineering, Pai Chai University, Daejeon 35345, Republic of Korea
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Gao D, Zhang X, Zhou C, Fan W, Zeng T, Yang Q, Yuan J, He Q, Liang D, Liu X, Yang Y, Zheng H, Hu Z. MRI-aided kernel PET image reconstruction method based on texture features. Phys Med Biol 2021; 66. [PMID: 34192685 DOI: 10.1088/1361-6560/ac1024] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2020] [Accepted: 06/30/2021] [Indexed: 11/11/2022]
Abstract
We investigate the reconstruction of low-count positron emission tomography (PET) projection, which is an important, but challenging, task. Using the texture feature extraction method of radiomics, i.e. the gray-level co-occurrence matrix (GLCM), texture features can be extracted from magnetic resonance imaging images with high-spatial resolution. In this work, we propose a kernel reconstruction method combining autocorrelation texture features derived from the GLCM. The new kernel function includes the correlations of both the intensity and texture features from the prior image. By regarding the GLCM as a discrete approximation of a probability density function, the asymptotically gray-level-invariant autocorrelation texture feature is generated, which can maintain the accuracy of texture features extracted from small image regions by reducing the number of quantized image gray levels. A computer simulation shows that the proposed method can effectively reduce the noise in the reconstructed image compared to the maximum likelihood expectation maximum method and improve the image quality and tumor region accuracy compared to the original kernel method for low-count PET reconstruction. A simulation study on clinical patient images also shows that the proposed method can improve the whole image quality and that the reconstruction of a high-uptake lesion is more accurate than that achieved by the original kernel method.
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Affiliation(s)
- Dongfang Gao
- Lauterbur Research Center for Biomedical Imaging, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, People's Republic of China.,Chinese Academy of Sciences Key Laboratory of Health Informatics, Shenzhen 518055, People's Republic of China
| | - Xu Zhang
- Department of Nuclear Medicine, Sun Yat-sen University Cancer Center, Guangzhou 510060, People's Republic of China
| | - Chao Zhou
- Department of Nuclear Medicine, Sun Yat-sen University Cancer Center, Guangzhou 510060, People's Republic of China
| | - Wei Fan
- Department of Nuclear Medicine, Sun Yat-sen University Cancer Center, Guangzhou 510060, People's Republic of China
| | - Tianyi Zeng
- Lauterbur Research Center for Biomedical Imaging, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, People's Republic of China.,Chinese Academy of Sciences Key Laboratory of Health Informatics, Shenzhen 518055, People's Republic of China
| | - Qian Yang
- Lauterbur Research Center for Biomedical Imaging, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, People's Republic of China.,Chinese Academy of Sciences Key Laboratory of Health Informatics, Shenzhen 518055, People's Republic of China
| | - Jianmin Yuan
- Central Research Institute, Shanghai United Imaging Healthcare, Shanghai 201807, People's Republic of China
| | - Qiang He
- Central Research Institute, Shanghai United Imaging Healthcare, Shanghai 201807, People's Republic of China
| | - Dong Liang
- Lauterbur Research Center for Biomedical Imaging, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, People's Republic of China.,Chinese Academy of Sciences Key Laboratory of Health Informatics, Shenzhen 518055, People's Republic of China
| | - Xin Liu
- Lauterbur Research Center for Biomedical Imaging, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, People's Republic of China.,Chinese Academy of Sciences Key Laboratory of Health Informatics, Shenzhen 518055, People's Republic of China
| | - Yongfeng Yang
- Lauterbur Research Center for Biomedical Imaging, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, People's Republic of China.,Chinese Academy of Sciences Key Laboratory of Health Informatics, Shenzhen 518055, People's Republic of China
| | - Hairong Zheng
- Lauterbur Research Center for Biomedical Imaging, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, People's Republic of China.,Chinese Academy of Sciences Key Laboratory of Health Informatics, Shenzhen 518055, People's Republic of China
| | - Zhanli Hu
- Lauterbur Research Center for Biomedical Imaging, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, People's Republic of China.,Chinese Academy of Sciences Key Laboratory of Health Informatics, Shenzhen 518055, People's Republic of China
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Xie N, Gong K, Guo N, Qin Z, Wu Z, Liu H, Li Q. Rapid high-quality PET Patlak parametric image generation based on direct reconstruction and temporal nonlocal neural network. Neuroimage 2021; 240:118380. [PMID: 34252526 DOI: 10.1016/j.neuroimage.2021.118380] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2021] [Revised: 07/04/2021] [Accepted: 07/07/2021] [Indexed: 11/25/2022] Open
Abstract
Parametric imaging based on dynamic positron emission tomography (PET) has wide applications in neurology. Compared to indirect methods, direct reconstruction methods, which reconstruct parametric images directly from the raw PET data, have superior image quality due to better noise modeling and richer information extracted from the PET raw data. For low-dose scenarios, the advantages of direct methods are more obvious. However, the wide adoption of direct reconstruction is inevitably impeded by the excessive computational demand and deficiency of the accessible raw data. In addition, motion modeling inside dynamic PET image reconstruction raises more computational challenges for direct reconstruction methods. In this work, we focused on the 18F-FDG Patlak model, and proposed a data-driven approach which can estimate the motion corrected full-dose direct Patlak images from the dynamic PET reconstruction series, based on a proposed novel temporal non-local convolutional neural network. During network training, direct reconstruction with motion correction based on full-dose dynamic PET sinograms was performed to obtain the training labels. The reconstructed full-dose /low-dose dynamic PET images were supplied as the network input. In addition, a temporal non-local block based on the dynamic PET images was proposed to better recover the structural information and reduce the image noise. During testing, the proposed network can directly output high-quality Patlak parametric images from the full-dose /low-dose dynamic PET images in seconds. Experiments based on 15 full-dose and 15 low-dose 18F-FDG brain datasets were conducted and analyzed to validate the feasibility of the proposed framework. Results show that the proposed framework can generate better image quality than reference methods.
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Affiliation(s)
- Nuobei Xie
- College of Optical Science and Engineering, Zhejiang University, 38 Zheda Road, Building 3, Hangzhou 310027, China; Center for Advanced Medical Computing and Analysis, Massachusetts General Hospital and Harvard Medical School, 55 Fruit St, White 427, 125 Nashua Street, Suite 660, Boston, MA 02114, United States.
| | - Kuang Gong
- Center for Advanced Medical Computing and Analysis, Massachusetts General Hospital and Harvard Medical School, 55 Fruit St, White 427, 125 Nashua Street, Suite 660, Boston, MA 02114, United States.
| | - Ning Guo
- Center for Advanced Medical Computing and Analysis, Massachusetts General Hospital and Harvard Medical School, 55 Fruit St, White 427, 125 Nashua Street, Suite 660, Boston, MA 02114, United States
| | - Zhixing Qin
- Department of Nuclear Medicine, First Hospital of Shanxi Medical University, Taiyuan, Shanxi, China
| | - Zhifang Wu
- Department of Nuclear Medicine, First Hospital of Shanxi Medical University, Taiyuan, Shanxi, China
| | - Huafeng Liu
- College of Optical Science and Engineering, Zhejiang University, 38 Zheda Road, Building 3, Hangzhou 310027, China.
| | - Quanzheng Li
- Center for Advanced Medical Computing and Analysis, Massachusetts General Hospital and Harvard Medical School, 55 Fruit St, White 427, 125 Nashua Street, Suite 660, Boston, MA 02114, United States.
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Xie N, Gong K, Guo N, Qin Z, Wu Z, Liu H, Li Q. Penalized-likelihood PET Image Reconstruction Using 3D Structural Convolutional Sparse Coding. IEEE Trans Biomed Eng 2020; 69:4-14. [PMID: 33284746 DOI: 10.1109/tbme.2020.3042907] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
Positron emission tomography (PET) is widely used for clinical diagnosis. As PET suffers from low resolution and high noise, numerous efforts try to incorporate anatomical priors into PET image reconstruction, especially with the development of hybrid PET/CT and PET/MRI systems. In this work, we proposed a cube-based 3D structural convolutional sparse coding (CSC) concept for penalized-likelihood PET image reconstruction, named 3D PET-CSC. The proposed 3D PET-CSC takes advantage of the convolutional operation and manages to incorporate anatomical priors without the need of registration or supervised training. As 3D PET-CSC codes the whole 3D PET image, instead of patches, it alleviates the staircase artifacts commonly presented in traditional patch-based sparse coding methods. Compared with traditional coding methods in Fourier domain, the proposed method extends the 3D CSC to a straightforward approach based on the pursuit of localized cubes. Moreover, we developed the residual-image and order-subset mechanisms to further reduce the computational cost and accelerate the convergence for the proposed 3D PET-CSC method. Experiments based on computer simulations and clinical datasets demonstrate the superiority of 3D PET-CSC compared with other reference methods.
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A Non-Local Low-Rank Algorithm for Sub-Bottom Profile Sonar Image Denoising. REMOTE SENSING 2020. [DOI: 10.3390/rs12142336] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Due to the influence of equipment instability and surveying environment, scattering echoes and other factors, it is sometimes difficult to obtain high-quality sub-bottom profile (SBP) images by traditional denoising methods. In this paper, a novel SBP image denoising method is developed for obtaining underlying clean images based on a non-local low-rank framework. Firstly, to take advantage of the inherent layering structures of the SBP image, a direction image is obtained and used as a guidance image. Secondly, the robust guidance weight for accurately selecting the similar patches is given. A novel denoising method combining the weight and a non-local low-rank filtering framework is proposed. Thirdly, after discussing the filtering parameter settings, the proposed method is tested in actual measurements of sub-bottom, both in deep water and shallow water. Experimental results validate the excellent performance of the proposed method. Finally, the proposed method is verified and compared with other methods quantificationally based on the synthetic images and has achieved the total average peak signal-to-noise ratio (PSNR) of 21.77 and structural similarity index (SSIM) of 0.573, which is far better than other methods.
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