COVID-19 Spatio-Temporal Evolution Using Deep Learning at a European Level

Evidence-driven spatiotemporal COVID-19 hospitalization prediction with Ising dynamics

In this work, we aim to accurately predict the number of hospitalizations during the COVID-19 pandemic by developing a spatiotemporal prediction model. We propose HOIST, an Ising dynamics-based deep learning model for spatiotemporal COVID-19 hospitalization prediction. By drawing the analogy between locations and lattice sites in statistical mechanics, we use the Ising dynamics to guide the model to extract and utilize spatial relationships across locations and model the complex influence of granular information from real-world clinical evidence. By leveraging rich linked databases, including insurance claims, census information, and hospital resource usage data across the U.S., we evaluate the HOIST model on the large-scale spatiotemporal COVID-19 hospitalization prediction task for 2299 counties in the U.S. In the 4-week hospitalization prediction task, HOIST achieves 368.7 mean absolute error, 0.6 [Formula: see text] and 0.89 concordance correlation coefficient score on average. Our detailed number needed to treat (NNT) and cost analysis suggest that future COVID-19 vaccination efforts may be most impactful in rural areas. This model may serve as a resource for future county and state-level vaccination efforts.

Spatio-temporal variation of Covid-19 health outcomes in India using deep learning based models

Deep learning methods have become the state of the art for spatio-temporal predictive analysis in a wide range of fields, including environmental management, public health, urban planning, pollution monitoring, and so on. Despite the fact that a variety of powerful deep learning-based models can address various problem-specific issues in different research domain, it has been found that no single optimal model can outperform everywhere. Now, in the last two years, various deep learning-based studies have provided a variety of best-performing techniques for predicting COVID-19 health outcomes. In this context, this study attempts to perform a case study that investigates the spatio-temporal variation in the performance of deep-learning-based methods for predicting COVID-19 health outcomes in India. Various widely applied deep learning models namely CNN (convolutional neural network), RNN (recurrent neural network), Vanilla LSTM (long short-term memory), LSTM Autoencoder, and Bidirectional LSTM are considered to investigate their spatio-temporal performance variation. The effectiveness of the models is assessed using various metrics based on COVID-19 mortality time-series from 36 states and union territories of India.

Novel Insights in Spatial Epidemiology Utilizing Explainable AI (XAI) and Remote Sensing

The COVID-19 pandemic has affected many aspects of human life around the world, due to its tremendous outcomes on public health and socio-economic activities. Policy makers have tried to develop efficient responses based on technologies and advanced pandemic control methodologies, to limit the wide spreading of the virus in urban areas. However, techniques such as social isolation and lockdown are short-term solutions that minimize the spread of the pandemic in cities and do not invert long-term issues that derive from climate change, air pollution and urban planning challenges that enhance the spreading ability. Thus, it seems crucial to understand what kind of factors assist or prevent the wide spreading of the virus. Although AI frameworks have a very efficient predictive ability as data-driven procedures, they often struggle to identify strong correlations among multidimensional data and provide robust explanations. In this paper, we propose the fusion of a heterogeneous, spatio-temporal dataset that combine data from eight European cities spanning from 1 January 2020 to 31 December 2021 and describe atmospheric, socio-economic, health, mobility and environmental factors all related to potential links with COVID-19. Remote sensing data are the key solution to monitor the availability on public green spaces between cities in the study period. So, we evaluate the benefits of NIR and RED bands of satellite images to calculate the NDVI and locate the percentage in vegetation cover on each city for each week of our 2-year study. This novel dataset is evaluated by a tree-based machine learning algorithm that utilizes ensemble learning and is trained to make robust predictions on daily cases and deaths. Comparisons with other machine learning techniques justify its robustness on the regression metrics RMSE and MAE. Furthermore, the explainable frameworks SHAP and LIME are utilized to locate potential positive or negative influence of the factors on global and local level, with respect to our model’s predictive ability. A variation of SHAP, namely treeSHAP, is utilized for our tree-based algorithm to make fast and accurate explanations.