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Zhang W, Cheng X, Jing Z, Cao Y, Yuan S, Zhang H, Zhang Y. Exogenous GA 3 Enhances Nitrogen Uptake and Metabolism under Low Nitrate Conditions in 'Duli' ( Pyrus betulifolia Bunge) Seedlings. Int J Mol Sci 2024; 25:7967. [PMID: 39063209 PMCID: PMC11277063 DOI: 10.3390/ijms25147967] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2024] [Revised: 07/18/2024] [Accepted: 07/18/2024] [Indexed: 07/28/2024] Open
Abstract
'Duli' (Pyrus betulifolia Bunge) is one of the main rootstocks of pear trees in China. Gibberellin (GA) is a key plant hormone and the roles of GA in nitrate (NO3-) uptake and metabolism in plants remain unclear. In this study, we investigated the effects of exogenous GA3 on the N metabolism of 'Duli' seedlings under NO3- deficiency. The results showed that exogenous GA3 significantly improves 'Duli' growth under NO3- deficiency. On the one hand, GA3 altered the root architecture, increased the content of endogenous hormones (GA3, IAA, and ZR), and enhanced photosynthesis; on the other hand, it enhanced the activities of N-metabolizing enzymes and the accumulation of N, and increased the expression levels of N absorption (PbNRT2) and the metabolism genes (PbNR, PbGILE, PbGS, and PbGOGAT). However, GA3 did not delay the degradation of chlorophyll. Paclobutrazol had the opposite effect on growth. Overall, GA3 can increase NO3- uptake and metabolism and relieve the growth inhibition of 'Duli' seedlings under NO3- deficiency.
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Affiliation(s)
| | | | | | | | | | | | - Yuxing Zhang
- College of Horticulture, Hebei Agricultural University, Baoding 071001, China; (W.Z.); (X.C.); (S.Y.); (H.Z.)
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2
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Katsavou E, Sarafoglou C, Balabanidou V, Skoufa E, Nauen R, Linka M, Geibel S, Denecke S, Vontas J. Characterisation of lepidopteran geranylgeranyl diphosphate synthase as a putative pesticide target. INSECT MOLECULAR BIOLOGY 2024; 33:147-156. [PMID: 37962063 DOI: 10.1111/imb.12885] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/04/2023] [Accepted: 10/11/2023] [Indexed: 11/15/2023]
Abstract
Geranylgeranyl pyrophosphate (diphosphate) synthase (GGPPS) plays an important role in various physiological processes in insects, such as isoprenoid biosynthesis and protein prenylation. Here, we functionally characterised the GGPPS from the major agricultural lepidopteran pests Spodoptera frugiperda and Helicoverpa armigera. Partial disruption of GGPPS by CRISPR in S. frugiperda decreased embryo hatching rate and larval survival, suggesting that this gene is essential. Functional expression in vitro of Helicoverpa armigera GGPPS in Escherichia coli revealed a catalytically active enzyme. Next, we developed and optimised an enzyme assay to screen for potential inhibitors, such as the zoledronate and the minodronate, which showed a dose-dependent inhibition. Phylogenetic analysis of GGPPS across insects showed that GGPPS is highly conserved but also revealed several residues likely to be involved in substrate binding, which were substantially different in bee pollinator and human GGPPS. Considering the essentiality of GGPPS and its putative binding residue variability qualifies a GGPPS as a novel pesticide target. The developed assay may contribute to the identification of novel insecticide leads.
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Affiliation(s)
- Evangelia Katsavou
- Pesticide Science Laboratory, Department of Crop Science, Agricultural University of Athens, Athens, Greece
| | - Chara Sarafoglou
- Department of Biology, University of Crete, Crete, Greece
- Institute of Molecular Biology and Biotechnology, Foundation for Research and Technology-Hellas, Heraklion, Greece
| | - Vasileia Balabanidou
- Institute of Molecular Biology and Biotechnology, Foundation for Research and Technology-Hellas, Heraklion, Greece
| | - Evangelia Skoufa
- Institute of Molecular Biology and Biotechnology, Foundation for Research and Technology-Hellas, Heraklion, Greece
| | - Ralf Nauen
- R&D Pest Control, Crop Science Division, Bayer AG, Monheim am Rhein, Germany
| | - Marc Linka
- R&D Pest Control, Crop Science Division, Bayer AG, Monheim am Rhein, Germany
| | - Sven Geibel
- R&D Pest Control, Crop Science Division, Bayer AG, Monheim am Rhein, Germany
| | - Shane Denecke
- Department of Biology, University of Crete, Crete, Greece
- Department of Pathobiology, University of Pennsylvania, Philadelphia, Pennsylvania, USA
| | - John Vontas
- Pesticide Science Laboratory, Department of Crop Science, Agricultural University of Athens, Athens, Greece
- Department of Biology, University of Crete, Crete, Greece
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Talukder B, Schubert JE, Tofighi M, Likongwe PJ, Choi EY, Mphepo GY, Asgary A, Bunch MJ, Chiotha SS, Matthew R, Sanders BF, Hipel KW, vanLoon GW, Orbinski J. Complex adaptive systems-based framework for modeling the health impacts of climate change. THE JOURNAL OF CLIMATE CHANGE AND HEALTH 2024; 15:100292. [PMID: 38425789 PMCID: PMC10900873 DOI: 10.1016/j.joclim.2023.100292] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/25/2022] [Accepted: 12/01/2023] [Indexed: 03/02/2024]
Abstract
Introduction Climate change is a global phenomenon with far-reaching consequences, and its impact on human health is a growing concern. The intricate interplay of various factors makes it challenging to accurately predict and understand the implications of climate change on human well-being. Conventional methodologies have limitations in comprehensively addressing the complexity and nonlinearity inherent in the relationships between climate change and health outcomes. Objectives The primary objective of this paper is to develop a robust theoretical framework that can effectively analyze and interpret the intricate web of variables influencing the human health impacts of climate change. By doing so, we aim to overcome the limitations of conventional approaches and provide a more nuanced understanding of the complex relationships involved. Furthermore, we seek to explore practical applications of this theoretical framework to enhance our ability to predict, mitigate, and adapt to the diverse health challenges posed by a changing climate. Methods Addressing the challenges outlined in the objectives, this study introduces the Complex Adaptive Systems (CAS) framework, acknowledging its significance in capturing the nuanced dynamics of health effects linked to climate change. The research utilizes a blend of field observations, expert interviews, key informant interviews, and an extensive literature review to shape the development of the CAS framework. Results and discussion The proposed CAS framework categorizes findings into six key sub-systems: ecological services, extreme weather, infectious diseases, food security, disaster risk management, and clinical public health. The study employs agent-based modeling, using causal loop diagrams (CLDs) tailored for each CAS sub-system. A set of identified variables is incorporated into predictive modeling to enhance the understanding of health outcomes within the CAS framework. Through a combination of theoretical development and practical application, this paper aspires to contribute valuable insights to the interdisciplinary field of climate change and health. Integrating agent-based modeling and CLDs enhances the predictive capabilities required for effective health outcome analysis in the context of climate change. Conclusion This paper serves as a valuable resource for policymakers, researchers, and public health professionals by employing a CAS framework to understand and assess the complex network of health impacts associated with climate change. It offers insights into effective strategies for safeguarding human health amidst current and future climate challenges.
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Affiliation(s)
- Byomkesh Talukder
- Department of Global Health, Florida International University, USA
- Dahdaleh Institute for Global Health Research, York University, Canada
| | - Jochen E. Schubert
- Department of Civil and Environmental Engineering, University of California, Irvine, USA
| | - Mohammadali Tofighi
- Dahdaleh Institute for Global Health Research, York University, Canada
- ADERSIM & Disaster & Emergency Management, York University, Canada
| | - Patrick J. Likongwe
- Leadership for Environment and Development Southern and Eastern Africa (LEAD SEA), Malawi
| | - Eunice Y. Choi
- Dahdaleh Institute for Global Health Research, York University, Canada
| | - Gibson Y. Mphepo
- Leadership for Environment and Development Southern and Eastern Africa (LEAD SEA), Malawi
| | - Ali Asgary
- ADERSIM & Disaster & Emergency Management, York University, Canada
| | - Martin J. Bunch
- Faculty of Environmental and Urban Change, York University, Canada
| | - Sosten S. Chiotha
- Leadership for Environment and Development Southern and Eastern Africa (LEAD SEA), Malawi
| | - Richard Matthew
- Department of Urban Planning and Public Policy, University of California, Irvine, USA
| | - Brett F. Sanders
- Department of Civil and Environmental Engineering, University of California, Irvine, USA
- Department of Urban Planning and Public Policy, University of California, Irvine, USA
| | - Keith W. Hipel
- System Engineering Department, Waterloo University, Canada
| | - Gary W. vanLoon
- School of Environmental Studies, Queen's University, Kingston, Canada
| | - James Orbinski
- Dahdaleh Institute for Global Health Research, York University, Canada
- Faculty of Health, York University, Canada
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Srikanth B, Subrahmanyam D, Sanjeeva Rao D, Narender Reddy S, Supriya K, Raghuveer Rao P, Surekha K, Sundaram RM, Neeraja CN. Promising physiological traits associated with nitrogen use efficiency in rice under reduced N application. FRONTIERS IN PLANT SCIENCE 2023; 14:1268739. [PMID: 38053767 PMCID: PMC10694615 DOI: 10.3389/fpls.2023.1268739] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/28/2023] [Accepted: 10/05/2023] [Indexed: 12/07/2023]
Abstract
Higher grain yield in high-yielding rice varieties is mostly driven by nitrogen (N) fertilizer applied in abundant amounts leading to increased production cost and environmental pollution. This has fueled the studies on nitrogen use efficiency (NUE) to decrease the N fertilizer application in rice to the possible extent. NUE is a complex physiological trait controlled by multiple genes, but yet to be completely deciphered in rice. With an objective of identifying the promising physiological traits associated with NUE in rice, the performance of 14 rice genotypes was assessed at N0, N50, N100, and N150 for four (two wet and two dry) seasons using agro-morphological, grain yield, flag leaf traits, photosynthetic pigment content, flag leaf gas exchange traits, and chlorophyll fluorescence traits. Furthermore, the data were used to derive various NUE indices to identify the most appropriate indices useful to screen rice genotypes at N50. Results indicate that with the increase in N application, cumulative grain yield increased significantly up to N100 (5.02 t ha-1); however, the increment in grain yield was marginal at N150 (5.09 t ha-1). The mean reduction of grain yield was only 26.66% at N50 ranging from 15.0% to 34.2%. The significant finding of the study is the identification of flag leaf chlorophyll fluorescence traits (Fv/Fm, ΦPSII, ETR, and qP) and Ci associated with grain yield under N50, which can be used to screen N use efficient genotypes in rice under reduced N application. Out of nine NUE indices assessed, NUpE, NUtE, and NUEyield were able to delineate the high-yielding genotypes at N50 and were useful to screen rice under reduced N conditions. Birupa emerged as one of the high yielders under N50, even though it is a moderate yielder at N100 and infers the possibility of cultivating some of the released rice varieties under reduced N inputs. The study indicates the possibility of the existence of promising genetic variability for grain yield under reduced N, the potential of flag leaf chlorophyll fluorescence, and gas exchange traits as physiological markers and best suitable NUE indices to be deployed in rice breeding programs.
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Affiliation(s)
- Bathula Srikanth
- ICAR-Indian Institute of Rice Research, Hyderabad, India
- Professor Jayashankar Telangana State Agricultural University, Hyderabad, India
| | | | | | - Sadu Narender Reddy
- Professor Jayashankar Telangana State Agricultural University, Hyderabad, India
| | - Kallakuri Supriya
- Professor Jayashankar Telangana State Agricultural University, Hyderabad, India
| | | | - Kuchi Surekha
- ICAR-Indian Institute of Rice Research, Hyderabad, India
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Jia W, Ma Q, Li L, Dai C, Zhu M, Li C, Ding J, Guo W, Zhu X. The fate of nitrogen from different sources in a rice-wheat rotation system - A 15N labeling study. FRONTIERS IN PLANT SCIENCE 2023; 14:1271325. [PMID: 37929166 PMCID: PMC10620804 DOI: 10.3389/fpls.2023.1271325] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/02/2023] [Accepted: 09/25/2023] [Indexed: 11/07/2023]
Abstract
High loss and low nitrogen (N) efficiency in agricultural production is severe. Also, ammonia volatilization and N leaching aggravated environmental pollution. The eutrophication of surface water and the emissions of N2O increased, hence green fertilization management urgently needs to be rationalized. Coordinating N supply from different sources has been shown to reduce environmental pollution. Therefore, this study was dedicated to clarifying the transport of N sources in the rice-wheat rotation system. The stable isotope tracer technology was used to label fertilizer (F), soil (T), and straw (J) with 15N, respectively. The utilization of N by crops (the N ratio in organs), as well as the residual N in soil and loss status, were measured. According to the potential of response to N, all the wheat cultivars were divided into groups with high (HNV) and low efficiency (LNV). The N contribution ratio showed that 43.28%~45.70% of total N accumulation was from T, while 30.11%~41.73% and 13.82%~24.19% came from F and J. The trend in soil N residue (T > F > J) was consistent with the above, while it was the opposite in N loss (T< F< J). The seasonal effectiveness showed that T achieved the highest N utilization efficiency (31.83%~44.69%), followed by F (21.05%~39.18%) and J (11.02%~16.91%). The post-season sustainability showed that T decreased the most in soil N residue (2.08%~12.53%), and F decreased the most in N accumulation (9.64%~18.13%). However, J showed an increase in N recovery rate (2.87%~5.89%). N translocation and distribution showed that N from different sources in grains was significantly higher than that in stems, glumes, and leaves. The ratio of HNV (75.14%~79.62%) was higher than that of LNV (71.90%~74.59%) in grain, while it was the opposite in other organs. Plant N accumulation, soil N supply, and straw N transformation were determined jointly by the three N sources, thus reducing N loss and N2O production. Therefore, the results will highlight the insights for constructing local N and emission reduction models.
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Affiliation(s)
- Wenxin Jia
- Jiangsu Key Laboratory of Crop Genetics and Physiology, Agricultural College of Yangzhou University, Yangzhou, Jiangsu, China
| | - Quan Ma
- Jiangsu Key Laboratory of Crop Genetics and Physiology, Agricultural College of Yangzhou University, Yangzhou, Jiangsu, China
| | - Li Li
- Jiangsu Key Laboratory of Crop Genetics and Physiology, Agricultural College of Yangzhou University, Yangzhou, Jiangsu, China
| | - Cunhu Dai
- Jiangsu Key Laboratory of Crop Genetics and Physiology, Agricultural College of Yangzhou University, Yangzhou, Jiangsu, China
| | - Min Zhu
- Jiangsu Key Laboratory of Crop Genetics and Physiology, Agricultural College of Yangzhou University, Yangzhou, Jiangsu, China
- Co-Innovation Center for Modern Production Technology of Grain Crops, Yangzhou University, Yangzhou, Jiangsu, China
| | - Chunyan Li
- Jiangsu Key Laboratory of Crop Genetics and Physiology, Agricultural College of Yangzhou University, Yangzhou, Jiangsu, China
- Co-Innovation Center for Modern Production Technology of Grain Crops, Yangzhou University, Yangzhou, Jiangsu, China
| | - Jinfeng Ding
- Jiangsu Key Laboratory of Crop Genetics and Physiology, Agricultural College of Yangzhou University, Yangzhou, Jiangsu, China
- Co-Innovation Center for Modern Production Technology of Grain Crops, Yangzhou University, Yangzhou, Jiangsu, China
| | - Wenshan Guo
- Jiangsu Key Laboratory of Crop Genetics and Physiology, Agricultural College of Yangzhou University, Yangzhou, Jiangsu, China
- Co-Innovation Center for Modern Production Technology of Grain Crops, Yangzhou University, Yangzhou, Jiangsu, China
| | - Xinkai Zhu
- Jiangsu Key Laboratory of Crop Genetics and Physiology, Agricultural College of Yangzhou University, Yangzhou, Jiangsu, China
- Co-Innovation Center for Modern Production Technology of Grain Crops, Yangzhou University, Yangzhou, Jiangsu, China
- Joint International Research Laboratory of Agriculture and Agri-Product Safety, the Ministry of Education of China, Yangzhou University, Yangzhou, Jiangsu, China
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Villanueva G, Plazas M, Gramazio P, Moya RD, Prohens J, Vilanova S. Evaluation of three sets of advanced backcrosses of eggplant with wild relatives from different gene pools under low N fertilization conditions. HORTICULTURE RESEARCH 2023; 10:uhad141. [PMID: 37575654 PMCID: PMC10421729 DOI: 10.1093/hr/uhad141] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/04/2023] [Accepted: 07/08/2023] [Indexed: 08/15/2023]
Abstract
The development of new cultivars with improved nitrogen use efficiency (NUE) is key for implementing sustainable agriculture practices. Crop wild relatives (CWRs) provide valuable genetic resources for breeding programs aimed at achieving this goal. In this study, three eggplant (Solanum melongena) accessions together with their advanced backcrosses (ABs; BC3 to BC5 generations) were evaluated for 22 morpho-agronomic, physiological, and NUE traits under low nitrogen (LN) fertilization conditions. The ABs were developed with introgressions from the wild relatives Solanum insanum, Solanum dasyphyllum, and Solanum elaeagnifolium. The AB population comprised a total of 25, 59, and 59 genotypes, respectively, with overall donor wild relative genome coverage percentages of 58.8%, 46.3%, and 99.2%. The three S. melongena recurrent parents were also evaluated under control (normal) N fertilization. Reduction of N fertilization in the parents resulted in decreased chlorophyll content-related traits, aerial biomass, stem diameter, and yield and increased NUE, nitrogen uptake efficiency (NUpE), and nitrogen utilization efficiency (NUtE). However, the decrease in yield was moderate, ranging between 62.6% and 72.6%. A high phenotypic variation was observed within each of the three sets of ABs under LN conditions, with some individuals displaying improved transgressive characteristics over the recurrent parents. Using the single primer enrichment technology 5 k probes platform for high-throughput genotyping, we observed a variable but high degree of recurrent parent genome recovery in the ABs attributable to the lines recombination, allowing the successful identification of 16 quantitative trait loci (QTL). Different allelic effects were observed for the introgressed QTL alleles. Several candidate genes were identified in the QTL regions associated with plant growth, yield, fruit size, and NUE-related parameters. Our results show that eggplant materials with introgressions from CWRs can result in a dramatic impact in eggplant breeding for a more sustainable agriculture.
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Affiliation(s)
- Gloria Villanueva
- Instituto de Conservación y Mejora de la Agrodiversidad Valenciana, Universitat Politècnica de València, Camino de Vera 14, 46022, Valencia, Spain
| | - Mariola Plazas
- Instituto de Conservación y Mejora de la Agrodiversidad Valenciana, Universitat Politècnica de València, Camino de Vera 14, 46022, Valencia, Spain
| | - Pietro Gramazio
- Instituto de Conservación y Mejora de la Agrodiversidad Valenciana, Universitat Politècnica de València, Camino de Vera 14, 46022, Valencia, Spain
| | - Reyes D Moya
- Instituto de Conservación y Mejora de la Agrodiversidad Valenciana, Universitat Politècnica de València, Camino de Vera 14, 46022, Valencia, Spain
| | - Jaime Prohens
- Instituto de Conservación y Mejora de la Agrodiversidad Valenciana, Universitat Politècnica de València, Camino de Vera 14, 46022, Valencia, Spain
| | - Santiago Vilanova
- Instituto de Conservación y Mejora de la Agrodiversidad Valenciana, Universitat Politècnica de València, Camino de Vera 14, 46022, Valencia, Spains
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7
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Sheoran P, Kamboj P, Kumar A, Kumar A, Singh RK, Barman A, Prajapat K, Mandal S, Yousuf DJ, Narjary B, Kumar S. Matching N supply for yield maximization in salt-affected wheat agri-food systems: On-farm participatory assessment and validation. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 875:162573. [PMID: 36871711 DOI: 10.1016/j.scitotenv.2023.162573] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/09/2022] [Revised: 02/09/2023] [Accepted: 02/27/2023] [Indexed: 06/18/2023]
Abstract
Driven by the UN-SDGs of achieving food security and agricultural sustainability, it remains more challenging in degraded ecosystems to simultaneously improve the crop performance without creating unintended favour for excessive fertilization and associated environmental consequences. We assessed the N-use pattern of 105 wheat-growers in sodicity affected Ghaghar Basin of Haryana, India, and then experimented upon to optimize and identify indicators of efficient N use in contrasting wheat cultivars for sustainable production. The survey results revealed that majority of farmers (88%) have increased their reliance on N nutrition (∼18 % extra N), and even extended their duration of N scheduling (12-15 days) for better plant adaptation and yield insurance in sodicity stressed wheat; albeit to a greater extent in moderately sodic soils applying 192 kg N ha-1 in 62 days. The participatory trials validated the farmers' perception of using more than the recommended N in sodic lands. This could realize the transformative improvements in plant physiological [higher photosynthetic rate (Pn; 5 %) and transpiration rate (E; 9 %)] and yield [more tillers (ET; 3 %), grains spike-1 (GS; 6 %) and healthier grains (TGW; 3 %)] traits culminating in ∼20 % higher yield at 200 kg N ha-1 (N200). However, further incremental N application had no apparent yield advantage or monetary benefits. At N200, every additional kilogram of N captured by the crop beyond the recommended N improved grain yields by 36.1 kg ha-1 in KRL 210 and 33.7 kg ha-1 in HD 2967. Further, the varietal differences for N requirements, with 173 kg ha-1 in KRL 210 and 188 kg ha-1 in HD 2967, warrants the need of applying balanced fertilizer dose and advocate revision of existing N recommendations to cope up the sodicity induced agricultural vulnerability. Principal Component Analysis (PCA) and correlation matrix showed N uptake efficiency (NUpE) and total N uptake (TNUP) as the highly weighted variables illustrating strong positive association with grain yield, and potentially deciding the fate of proper N utilization in sodicity stressed wheat. Key insights suggested that combining participatory research with farmers' knowledge and local perspective could be decisive in better integration of technologies, and serving to adapt the real-time soil sodicity stress and sustaining wheat yields with economized farm profits.
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Affiliation(s)
| | - Paras Kamboj
- ICAR-Central Soil Salinity Research Institute, Karnal, India
| | - Arvind Kumar
- ICAR-Central Soil Salinity Research Institute, Karnal, India.
| | - Ashwani Kumar
- ICAR-Central Soil Salinity Research Institute, Karnal, India.
| | - Ranjay K Singh
- ICAR-Central Soil Salinity Research Institute, Karnal, India.
| | - Arijit Barman
- ICAR-Central Soil Salinity Research Institute, Karnal, India; ICAR-National Bureau of Soil Survey & Land Use Planning, Regional Station, Jorhat, Assam, India.
| | | | - Subhasis Mandal
- ICAR-Central Soil Salinity Research Institute, Karnal, India
| | | | - Bhaskar Narjary
- ICAR-Central Soil Salinity Research Institute, Karnal, India.
| | - Satyendra Kumar
- ICAR-Central Soil Salinity Research Institute, Karnal, India.
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8
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Ahmad N, Jiang Z, Zhang L, Hussain I, Yang X. Insights on Phytohormonal Crosstalk in Plant Response to Nitrogen Stress: A Focus on Plant Root Growth and Development. Int J Mol Sci 2023; 24:ijms24043631. [PMID: 36835044 PMCID: PMC9958644 DOI: 10.3390/ijms24043631] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2023] [Revised: 02/08/2023] [Accepted: 02/09/2023] [Indexed: 02/15/2023] Open
Abstract
Nitrogen (N) is a vital mineral component that can restrict the growth and development of plants if supplied inappropriately. In order to benefit their growth and development, plants have complex physiological and structural responses to changes in their nitrogen supply. As higher plants have multiple organs with varying functions and nutritional requirements, they coordinate their responses at the whole-plant level based on local and long-distance signaling pathways. It has been suggested that phytohormones are signaling substances in such pathways. The nitrogen signaling pathway is closely associated with phytohormones such as auxin (AUX), abscisic acid (ABA), cytokinins (CKs), ethylene (ETH), brassinosteroid (BR), strigolactones (SLs), jasmonic acid (JA), and salicylic acid (SA). Recent research has shed light on how nitrogen and phytohormones interact to modulate physiology and morphology. This review provides a summary of the research on how phytohormone signaling affects root system architecture (RSA) in response to nitrogen availability. Overall, this review contributes to identifying recent developments in the interaction between phytohormones and N, as well as serving as a foundation for further study.
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Affiliation(s)
- Nazir Ahmad
- State Key Laboratory of Conservation and Utilization of Subtropical Agro-Bioresources, Guangxi Key Laboratory of Sugarcane Biology, Guangxi University, Nanning 530004, China
| | - Zhengjie Jiang
- State Key Laboratory of Conservation and Utilization of Subtropical Agro-Bioresources, Guangxi Key Laboratory of Sugarcane Biology, Guangxi University, Nanning 530004, China
| | - Lijun Zhang
- State Key Laboratory of Conservation and Utilization of Subtropical Agro-Bioresources, Guangxi Key Laboratory of Sugarcane Biology, Guangxi University, Nanning 530004, China
| | - Iqbal Hussain
- Department of Horticulture, Institute of Vegetable Science, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310058, China
| | - Xiping Yang
- State Key Laboratory of Conservation and Utilization of Subtropical Agro-Bioresources, Guangxi Key Laboratory of Sugarcane Biology, Guangxi University, Nanning 530004, China
- National Demonstration Center for Experimental Plant Science Education, College of Agriculture, Guangxi University, Nanning 530004, China
- Correspondence:
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9
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Szulc P, Krauklis D, Ambroży-Deręgowska K, Wróbel B, Niedbała G, Niazian M, Selwet M. Response of Maize Varieties ( Zea mays L.) to the Application of Classic and Stabilized Nitrogen Fertilizers-Nitrogen as a Predictor of Generative Yield. PLANTS (BASEL, SWITZERLAND) 2023; 12:600. [PMID: 36771683 PMCID: PMC9919166 DOI: 10.3390/plants12030600] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/07/2023] [Revised: 01/24/2023] [Accepted: 01/27/2023] [Indexed: 06/18/2023]
Abstract
The study presents the results of a 3-year field trial aimed at assessing the yield and efficiency indicators of nitrogen application in the cultivation of three maize cultivars differing in agronomic and genetic profile. The advantages of the UltraGrain stabilo formulation (NBPT and NPPT) over ammonium nitrate and urea are apparent if a maize cultivar capable of efficient nutrient uptake in the pre-flowering period and effective utilization during the grain filling stage is selected. Therefore, the rational fertilization of maize with urea-based nitrogen fertilizer with a urease inhibitor requires the simultaneous selection of cultivars that are physiologically profiled for efficient nitrogen utilization from this form of fertilizer ("stay-green" cultivar). The interaction of a selective cultivar with a high genetically targeted potential for nitrogen uptake from soil, combined with a targeted selection of nitrogen fertilizer, is important not only in terms of production, but also environmental and economic purposes.
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Affiliation(s)
- Piotr Szulc
- Department of Agronomy, Poznań University of Life Sciences, Dojazd 11, 60-632 Poznań, Poland
| | - Daniel Krauklis
- Experimental Station for the Cultivar Testing in Chrząstowo, Research Centre for Cultivar Testing in Słupia Wielka, Chrząstowo 8, 89-100 Nakło nad Notecią, Poland
| | - Katarzyna Ambroży-Deręgowska
- Department of Mathematical and Statistical Methods, Poznań University of Life Sciences, Wojska Polskiego 28, 60-637 Poznań, Poland
| | - Barbara Wróbel
- Institute of Technology and Life Sciences-National Research Institute, 3 Hrabska Avenue, 05-090 Raszyn, Poland
| | - Gniewko Niedbała
- Department of Biosystems Engineering, Faculty of Environmental and Mechanical Engineering, Poznań University of Life Sciences, Wojska Polskiego 50, 60-627 Poznań, Poland
| | - Mohsen Niazian
- Field and Horticultural Crops Research Department, Kurdistan Agricultural and Natural Resources Research and Education Center, Agricultural Research, Education and Extension Organization (AREEO), Sanandaj 6616936311, Iran
| | - Marek Selwet
- Department of Soil Science and Microbiology, Poznań University of Life Sciences, Szydłowska 50, 60-656 Poznań, Poland
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10
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Koltun A, Maniero RA, Vitti M, de Setta N, Giehl RFH, Lima JE, Figueira A. Functional characterization of the sugarcane ( Saccharum spp.) ammonium transporter AMT2;1 suggests a role in ammonium root-to-shoot translocation. FRONTIERS IN PLANT SCIENCE 2022; 13:1039041. [PMID: 36466275 PMCID: PMC9716016 DOI: 10.3389/fpls.2022.1039041] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/07/2022] [Accepted: 10/31/2022] [Indexed: 06/17/2023]
Abstract
AMMONIUM TRANSPORTER/METHYLAMMONIUM PERMEASE/RHESUS (AMT) family members transport ammonium across membranes in all life domains. Plant AMTs can be categorized into AMT1 and AMT2 subfamilies. Functional studies of AMTs, particularly AMT1-type, have been conducted using model plants but little is known about the function of AMTs from crops. Sugarcane (Saccharum spp.) is a major bioenergy crop that requires heavy nitrogen fertilization but depends on a low carbon-footprint for competitive sustainability. Here, we identified and functionally characterized sugarcane ScAMT2;1 by complementing ammonium uptake-defective mutants of Saccharomyces cerevisiae and Arabidopsis thaliana. Reporter gene driven by the ScAMT2;1 promoter in A. thaliana revealed preferential expression in the shoot vasculature and root endodermis/pericycle according to nitrogen availability and source. Arabidopsis quadruple mutant plants expressing ScAMT2;1 driven by the CaMV35S promoter or by a sugarcane endogenous promoter produced significantly more biomass than mutant plants when grown in NH4 + and showed more 15N-ammonium uptake by roots and nitrogen translocation to shoots. In A. thaliana, ScAMT2;1 displayed a Km of 90.17 µM and Vmax of 338.99 µmoles h-1 g-1 root DW. Altogether, our results suggest that ScAMT2;1 is a functional high-affinity ammonium transporter that might contribute to ammonium uptake and presumably to root-to-shoot translocation under high NH4 + conditions.
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Affiliation(s)
- Alessandra Koltun
- Centro de Energia Nuclear na Agricultura, Universidade de São Paulo, Piracicaba, SP, Brazil
| | - Rodolfo A. Maniero
- Centro de Energia Nuclear na Agricultura, Universidade de São Paulo, Piracicaba, SP, Brazil
| | - Marielle Vitti
- Centro de Energia Nuclear na Agricultura, Universidade de São Paulo, Piracicaba, SP, Brazil
| | - Nathalia de Setta
- Centro de Ciências Naturais e Humanas, Universidade Federal do ABC, São Bernardo do Campo, SP, Brazil
- Instituto de Biociências, Universidade de São Paulo, São Paulo, SP, Brazil
| | - Ricardo F. H. Giehl
- Department of Physiology and Cell Biology, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany
| | - Joni E. Lima
- Centro de Energia Nuclear na Agricultura, Universidade de São Paulo, Piracicaba, SP, Brazil
- Departamento de Botânica, Universidade Federal de Minas Gerais, Belo Horizonte, MG, Brazil
| | - Antonio Figueira
- Centro de Energia Nuclear na Agricultura, Universidade de São Paulo, Piracicaba, SP, Brazil
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11
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Liu J, Zhu Y, Tao X, Chen X, Li X. Rapid prediction of winter wheat yield and nitrogen use efficiency using consumer-grade unmanned aerial vehicles multispectral imagery. FRONTIERS IN PLANT SCIENCE 2022; 13:1032170. [PMID: 36352879 PMCID: PMC9638066 DOI: 10.3389/fpls.2022.1032170] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/30/2022] [Accepted: 10/07/2022] [Indexed: 06/12/2023]
Abstract
Rapid and accurate assessment of yield and nitrogen use efficiency (NUE) is essential for growth monitoring, efficient utilization of fertilizer and precision management. This study explored the potential of a consumer-grade DJI Phantom 4 Multispectral (P4M) camera for yield or NUE assessment in winter wheat by using the universal vegetation indices independent of growth period. Three vegetation indices having a strong correlation with yield or NUE during the entire growth season were determined through Pearson's correlational analysis, while multiple linear regression (MLR), stepwise MLR (SMLR), and partial least-squares regression (PLSR) methods based on the aforementioned vegetation indices were adopted during different growth periods. The cumulative results showed that the reciprocal ratio vegetation index (repRVI) had a high potential for yield assessment throughout the growing season, and the late grain-filling stage was deemed as the optimal single stage with R2, root mean square error (RMSE), and mean absolute error (MAE) of 0.85, 793.96 kg/ha, and 656.31 kg/ha, respectively. MERIS terrestrial chlorophyll index (MTCI) performed better in the vegetative period and provided the best prediction results for the N partial factor productivity (NPFP) at the jointing stage, with R2, RMSE, and MAE of 0.65, 10.53 kg yield/kg N, and 8.90 kg yield/kg N, respectively. At the same time, the modified normalized difference blue index (mNDblue) was more accurate during the reproductive period, providing the best accuracy for agronomical NUE (aNUE) assessment at the late grain-filling stage, with R2, RMSE, and MAE of 0.61, 7.48 kg yield/kg N, and 6.05 kg yield/kg N, respectively. Furthermore, the findings indicated that model accuracy cannot be improved by increasing the number of input features. Overall, these results indicate that the consumer-grade P4M camera is suitable for early and efficient monitoring of important crop traits, providing a cost-effective choice for the development of the precision agricultural system.
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Affiliation(s)
- Jikai Liu
- College of Resource and Environment, Anhui Science and Technology University, Fengyang, China
- Anhui Province Agricultural Waste Fertilizer Utilization and Cultivated Land Quality Improvement Engineering Research Center, Anhui Science and Technology University, Fengyang, China
| | - Yongji Zhu
- College of Resource and Environment, Anhui Science and Technology University, Fengyang, China
- Anhui Province Agricultural Waste Fertilizer Utilization and Cultivated Land Quality Improvement Engineering Research Center, Anhui Science and Technology University, Fengyang, China
| | - Xinyu Tao
- College of Resource and Environment, Anhui Science and Technology University, Fengyang, China
- Anhui Province Agricultural Waste Fertilizer Utilization and Cultivated Land Quality Improvement Engineering Research Center, Anhui Science and Technology University, Fengyang, China
| | - Xiaofang Chen
- College of Resource and Environment, Anhui Science and Technology University, Fengyang, China
- Anhui Province Agricultural Waste Fertilizer Utilization and Cultivated Land Quality Improvement Engineering Research Center, Anhui Science and Technology University, Fengyang, China
| | - Xinwei Li
- College of Resource and Environment, Anhui Science and Technology University, Fengyang, China
- Anhui Province Agricultural Waste Fertilizer Utilization and Cultivated Land Quality Improvement Engineering Research Center, Anhui Science and Technology University, Fengyang, China
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12
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Ntinyari W, Gweyi-Onyango J, Giweta M, Mutegi J, Mochoge B, Nziguheba G, Masso C. Nitrogen budgets and nitrogen use efficiency as agricultural performance indicators in Lake Victoria basin. FRONTIERS IN SUSTAINABLE FOOD SYSTEMS 2022. [DOI: 10.3389/fsufs.2022.1023579] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Too little nitrogen (N) is a threat to crop productivity and soil fertility in sub-Saharan Africa (SSA). Nitrogen budgets (NB) and nitrogen use efficiency (NUE) are critical tools for assessing N dynamics in agriculture and have received little or no attention in the region. Data were collected from smallholder farmers clustered into two categories, farmers applying and farmers not applying N fertilizers. NB were calculated using the Coupled Human and Natural Systems (CHANS) model approach for field and farm spatial scales. The results showed spatial variabilities in NB and NUE at the field level (maize and rice) across all the catchments. At the field level, N balances were negative for the two crops in all the catchments. Similarly, at the farm gate, a deficit of −78.37 kg N ha−1 was observed, an indicator of soil N mining. NUE values at the field scale varied across the catchments for both crops, with values for maize grown without N ranging from 25.76 to 140.18%. Even with the application of mineral N at higher levels in rice fields compared to maize fields, NUE values ranged between 81.92 and 224.6%. Our study revealed that the Lake Victoria region suffers from inefficient N cycling due to depleted soil N pools and low synchrony between N input and N removal. Therefore, a challenge lies in exploiting more sustainable N sources for farmers in the region for sustainable farming systems. The NB and NUE provide critical information to agriculture stakeholders to develop environmental, agronomic, and economically viable N management solutions.
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13
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Chattha MS, Ali Q, Haroon M, Afzal MJ, Javed T, Hussain S, Mahmood T, Solanki MK, Umar A, Abbas W, Nasar S, Schwartz-Lazaro LM, Zhou L. Enhancement of nitrogen use efficiency through agronomic and molecular based approaches in cotton. FRONTIERS IN PLANT SCIENCE 2022; 13:994306. [PMID: 36237509 PMCID: PMC9552886 DOI: 10.3389/fpls.2022.994306] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/14/2022] [Accepted: 08/22/2022] [Indexed: 05/22/2023]
Abstract
Cotton is a major fiber crop grown worldwide. Nitrogen (N) is an essential nutrient for cotton production and supports efficient crop production. It is a crucial nutrient that is required more than any other. Nitrogen management is a daunting task for plants; thus, various strategies, individually and collectively, have been adopted to improve its efficacy. The negative environmental impacts of excessive N application on cotton production have become harmful to consumers and growers. The 4R's of nutrient stewardship (right product, right rate, right time, and right place) is a newly developed agronomic practice that provides a solid foundation for achieving nitrogen use efficiency (NUE) in cotton production. Cropping systems are equally crucial for increasing production, profitability, environmental growth protection, and sustainability. This concept incorporates the right fertilizer source at the right rate, time, and place. In addition to agronomic practices, molecular approaches are equally important for improving cotton NUE. This could be achieved by increasing the efficacy of metabolic pathways at the cellular, organ, and structural levels and NUE-regulating enzymes and genes. This is a potential method to improve the role of N transporters in plants, resulting in better utilization and remobilization of N in cotton plants. Therefore, we suggest effective methods for accelerating NUE in cotton. This review aims to provide a detailed overview of agronomic and molecular approaches for improving NUE in cotton production, which benefits both the environment and growers.
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Affiliation(s)
- Muhammad Sohaib Chattha
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-Products, Institute of Agro-Product Safety and Nutrition, Zhejiang Academy of Agricultural Sciences, Hangzhou, China
- School of Plant, Environmental and Soil Sciences, Louisiana State University Agricultural Center, Baton Rouge, LA, United States
| | - Qurban Ali
- Laboratory of Integrated Management of Crop Diseases and Pests, Department of Plant Pathology, College of Plant Protection, Ministry of Education, Nanjing Agricultural University, Nanjing, China
| | - Muhammad Haroon
- National Key Laboratory of Crop Genetic Improvement and National Centre of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan, China
| | | | - Talha Javed
- College of Agriculture, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Sadam Hussain
- Department of Agronomy, University of Agriculture Faisalabad, Faisalabad, Pakistan
| | - Tahir Mahmood
- Department of Plant Breeding & Genetics, Pir Mehr Ali Shah Arid Agriculture University, Rawalpindi, Pakistan
| | - Manoj K. Solanki
- Institute of Biology, Biotechnology and Environmental Protection, Faculty of Natural Sciences, University of Silesia in Katowice, Katowice, Poland
| | - Aisha Umar
- Institute of Botany, University of the Punjab, Lahore, Pakistan
| | - Waseem Abbas
- National Key Laboratory of Crop Genetic Improvement and National Centre of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan, China
| | - Shanza Nasar
- Department of Botany, University of Gujrat Hafiz Hayat Campus, Gujrat, Pakistan
| | - Lauren M. Schwartz-Lazaro
- School of Plant, Environmental and Soil Sciences, Louisiana State University Agricultural Center, Baton Rouge, LA, United States
| | - Lei Zhou
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-Products, Institute of Agro-Product Safety and Nutrition, Zhejiang Academy of Agricultural Sciences, Hangzhou, China
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14
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Liu S, Teng Z, Liu H, Wang T, Wang G, Xu Q, Zhang X, Jiang M, Wang C, Huang W, Pang H. A Ce‐UiO‐66 Metal–Organic Framework‐Based Graphene‐Embedded Photocatalyst with Controllable Activation for Solar Ammonia Fertilizer Production. Angew Chem Int Ed Engl 2022; 61:e202207026. [DOI: 10.1002/anie.202207026] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2022] [Indexed: 11/12/2022]
Affiliation(s)
- Sixiao Liu
- College of Chemistry and Chemical Engineering Yangzhou University Yangzhou 225002 P. R. China
| | - Zhenyuan Teng
- Department of Applied Chemistry Faculty of Engineering Kyushu Institute of Technology Kitakyushu 804-8550 Japan
| | - Hang Liu
- College of Chemistry and Chemical Engineering Yangzhou University Yangzhou 225002 P. R. China
| | - Tianyi Wang
- College of Chemistry and Chemical Engineering Yangzhou University Yangzhou 225002 P. R. China
| | - Guoxiu Wang
- School of Mathematical and Physical Science University of Technology Sydney Sydney NSW 2007 Australia
| | - Qiang Xu
- College of Chemistry and Chemical Engineering Yangzhou University Yangzhou 225002 P. R. China
| | - Xiuyun Zhang
- College of Physical Science and Technology Yangzhou University Yangzhou 225002 P. R. China
| | - Min Jiang
- College of Agriculture Yangzhou University Yangzhou 225002 P. R. China
| | - Chengyin Wang
- College of Chemistry and Chemical Engineering Yangzhou University Yangzhou 225002 P. R. China
| | - Wei Huang
- State Key Laboratory of Organic Electronics and Information Displays & Institute of Advanced Materials (IAM) Nanjing University of Posts & Telecommunications Nanjing 210023 P R. China
- Frontiers Science Center for Flexible Electronics (FSCFE) MIIT Key Laboratory of Flexible Electronics (KLoFE) Northwestern Polytechnical University Xi'an 710072 P. R. China
| | - Huan Pang
- College of Chemistry and Chemical Engineering Yangzhou University Yangzhou 225002 P. R. China
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15
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Begho T, Eory V, Glenk K. Demystifying risk attitudes and fertilizer use: A review focusing on the behavioral factors associated with agricultural nitrogen emissions in South Asia. FRONTIERS IN SUSTAINABLE FOOD SYSTEMS 2022. [DOI: 10.3389/fsufs.2022.991185] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Fertilizer use is environmentally unsustainable in South Asia. Ideally, farmers would follow optimal fertilization rates for crops based on scientific recommendations. However, there is ample evidence on why farmers under-fertilize or over-fertilize their crops. Important amongst them is that farmers' attitude to risk influences decisions on fertilizer use. This paper reviews studies on the effects of risk attitude on fertilizer use, the timing of application, and application intensity. We observe that the use of fertilizer is affected by perceptions of fertilizer as a risk-enhancing or risk-reducing input. In order to influence the future fertilizer decisions of farmers, several policy measures are suggested. Among these, gradual withdrawal of fertilizer subsidies, repurposing subsides toward improved technologies that increase productivity, improves nitrogen use efficiency (NUE) and reduce emission, providing enhanced-efficiency fertilizers and eliminating the fraudulent practice of fertilizer adulteration may be the most appropriate in a South Asian context.
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16
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Cunha-Zeri G, Guidolini JF, Branco EA, Ometto JP. How sustainable is the nitrogen management in Brazil? A sustainability assessment using the Entropy Weight Method. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2022; 316:115330. [PMID: 35658265 DOI: 10.1016/j.jenvman.2022.115330] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/24/2022] [Revised: 05/02/2022] [Accepted: 05/14/2022] [Indexed: 06/15/2023]
Abstract
Nitrogen pollution is one of Brazil's most threatening and challenging environmental problems, caused mainly by productive activities aimed at meeting the demand of food, energy, and housing by a fast-growing population. Sustainable nitrogen management involves optimizing the beneficial effects of reactive nitrogen (Nr) use and, at the same time, mitigating the negative impacts of its excess on the environment and human health. Here we conduct an assessment of nitrogen sustainability in Brazil from 2000 to 2018 applying the Entropy Weight Method (EWM) to a set of nitrogen-related indicators within four subsystems: environmental, economic, social, and institutional. Our research objectives are to determine an overall Nitrogen Sustainability Index and discuss the relevance of indicators linked to the main anthropogenic sources of nitrogen pollution. By our analysis, the following indicators play a key role in determining nitrogen sustainability levels in the country: political stability, fertilizer consumption, population growth, and investments in water and sanitation. Our findings suggest that political and institutional concerns are greatly impacting sustainable actions towards nitrogen management, leading Brazil to reach only a weak-to-basic level of sustainability in the studied period. We highlight that neglecting the problems caused by the unsustainable nitrogen management can increase environmental, economic, and social issues, and jeopardize the achievement of the Sustainable Development Goals (SDGs). In addition to fostering of sustainability goals on the agriculture and energy sectors from the environmental, socioeconomic, and political perspectives, the importance of this assessment lies in supporting governments, policymakers, and civil society to develop sustainable nitrogen roadmaps to significantly reduce nitrogen waste by 2030, as outlined in the 2019 Colombo Declaration on Sustainable Nitrogen Management backed by the UN Environment Programme.
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Affiliation(s)
- Gisleine Cunha-Zeri
- National Institute for Space Research (INPE), São José dos Campos, SP, 12227-010, Brazil.
| | | | - Evandro Albiach Branco
- National Institute for Space Research (INPE), São José dos Campos, SP, 12227-010, Brazil
| | - Jean Pierre Ometto
- National Institute for Space Research (INPE), São José dos Campos, SP, 12227-010, Brazil
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17
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Nadeem F, Mahmood R, Sabir M, Khan WUD, Haider MS, Wang R, Zhong Y, Ishfaq M, Li X. Foxtail millet [Setaria italica (L.) Beauv.] over-accumulates ammonium under low nitrogen supply. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2022; 185:35-44. [PMID: 35660775 DOI: 10.1016/j.plaphy.2022.05.031] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/25/2022] [Revised: 05/22/2022] [Accepted: 05/24/2022] [Indexed: 06/15/2023]
Abstract
Nitrogen (N) deficiency is a primary limiting factor for crop production worldwide. Previously, we reported root system architectural modifications of hydroponically cultured foxtail millet [Setaria italica (L.) Beauv.] to facilitate N translocation under N limitation. Here, we investigated foxtail millet for its shoot adaptation to low N in terms of internal N regulation under hydroponic culture. The results of this study revealed that the shoot N and nitrate (NO3-) concentrations significantly declined as compared to control (CK); however, the shoot over-accumulated ammonium (NH4+) under low N (LN). N shortage resulted in down-regulation of expressions of SiPetA, SiccsA, SipsbA, SirpoB, SipsaA, SiatpA, Sirps16, and SiPEPC which, undermined chloroplast functioning and CO2 assimilation for the provision of carbon skeleton. Carbon deficiency and lower activities of GS decelerated ammonia assimilation and led to over-accumulation of NH4+ in the LN-shoot, as indicated by lower concentrations of total amino acids. Thus, enhanced GOGAT activity was to assimilate NH4+ while, those of catalase (CAT), superoxide dismutase (SOD) and peroxidase (POD) were to scavenge reactive oxygen species (ROS) of NH4+ toxicity framework. The weakened chloroplast factory eventually minimized photosynthesis and reduced dry mass of the LN shoot. Such regulation of N by the shoot, perhaps, resurrected physiological functions which maintained internal mineral status under nitrogen limitation in foxtail millet.
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Affiliation(s)
- Faisal Nadeem
- MOE Key Laboratory of Plant-Soil Interactions, Department of Plant Nutrition, China Agricultural University, Beijing, 100193, China; Department of Soil Science, University of the Punjab, Lahore, 54590, Pakistan
| | - Rashid Mahmood
- Department of Soil Science, University of the Punjab, Lahore, 54590, Pakistan
| | - Muhammad Sabir
- Institute of Soil and Environmental Sciences, University of Agriculture, Faisalabad, 38040, Pakistan
| | - Waqas-Ud-Din Khan
- Sustainable Development Study Centre, Government College University, Lahore, 54000, Pakistan
| | | | - Ruifeng Wang
- MOE Key Laboratory of Plant-Soil Interactions, Department of Plant Nutrition, China Agricultural University, Beijing, 100193, China
| | - Yanting Zhong
- Department of Vegetable Sciences, China Agricultural University, Beijing, 100193, China
| | - Muhammad Ishfaq
- MOE Key Laboratory of Plant-Soil Interactions, Department of Plant Nutrition, China Agricultural University, Beijing, 100193, China
| | - Xuexian Li
- MOE Key Laboratory of Plant-Soil Interactions, Department of Plant Nutrition, China Agricultural University, Beijing, 100193, China.
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18
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Hashemi SZ, Darzi-Naftchali A, Karandish F, Ritzema H, Solaimani K. Assessing agro-environmental sustainability of intensive agricultural systems. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 831:154994. [PMID: 35378191 DOI: 10.1016/j.scitotenv.2022.154994] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/21/2022] [Revised: 03/26/2022] [Accepted: 03/29/2022] [Indexed: 06/14/2023]
Abstract
Sustainable production in water-scarce regions entails not to overshoot the sustainable blue water availability (BWA), which in turn requires addressing environmental flow requirements (EFRs). We explored the long-term effects of agricultural development, before (1984-1997) and during (1998-2018) the operation of the modern irrigation and drainage network of Tajan (TIDN), northern Iran, on the sustainability of blue water consumptions. A combination of different methods were applied to estimate hydrological EFRs of rivers, ab-bandans (traditional water reservoirs), and groundwater resources. Three major pollutants in the region's water resources, including nitrogen, phosphorus, and salinity, were used to estimate water quality EFR. Monthly agriculture water footprints (WFs) were calculated using the AquaCrop model, and then were compared with the region's BWA, which was calculated by subtracting monthly EFRs from monthly natural runoff. When WF exceeded BWA, the production system includes unsustainable water consumption. The EFR satisfaction of surface water decreased after TIDN operation by about 19%. Unmanaged nitrogen application and post-TIDN overexploitation of groundwater resulted in substantial increase in groundwater EFR violation. The TIDN led to more water consuming cropping pattern resulting in increased agricultural water consumption by about 73%. Overall, agricultural development in TIDN was beyond the capacity of the area, which resulted in up to about 167 MCM y-1 unsustainable blue water consumption. Based on the results, the new framework presented for assessing agro-environmental sustainability could assist managers and policy makers to modify agricultural systems according to environment resilience.
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Affiliation(s)
- Seyedeh-Zohreh Hashemi
- Water Engineering Department, Sari Agricultural Sciences and Natural Resources University, Sari, Iran
| | - Abdullah Darzi-Naftchali
- Water Engineering Department, Sari Agricultural Sciences and Natural Resources University, Sari, Iran.
| | | | - Henk Ritzema
- Water Resources Management Group, Wageningen University, 6708 PB Wageningen, the Netherlands.
| | - Karim Solaimani
- Department of Watershed Management, Sari Agricultural Sciences and Natural Resources University, Sari, Iran.
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Ahmad N, Su B, Ibrahim S, Kuang L, Tian Z, Wang X, Wang H, Dun X. Deciphering the Genetic Basis of Root and Biomass Traits in Rapeseed (Brassica napus L.) through the Integration of GWAS and RNA-Seq under Nitrogen Stress. Int J Mol Sci 2022; 23:ijms23147958. [PMID: 35887301 PMCID: PMC9323118 DOI: 10.3390/ijms23147958] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2022] [Revised: 07/16/2022] [Accepted: 07/16/2022] [Indexed: 02/06/2023] Open
Abstract
An excellent root system is responsible for crops with high nitrogen-use efficiency (NUE). The current study evaluated the natural variations in 13 root- and biomass-related traits under a low nitrogen (LN) treatment in a rapeseed association panel. The studied traits exhibited significant phenotypic differences with heritabilities ranging from 0.53 to 0.66, and most of the traits showed significant correlations with each other. The genome-wide association study (GWAS) found 51 significant and 30 suggestive trait–SNP associations that integrated into 14 valid quantitative trait loci (QTL) clusters and explained 5.7–21.2% phenotypic variance. In addition, RNA sequencing was performed at two time points to examine the differential expression of genes (DEGs) between high and low NUE lines. In total, 245, 540, and 399 DEGs were identified as LN stress-specific, high nitrogen (HN) condition-specific, and HNLN common DEGs, respectively. An integrated analysis of GWAS, weighted gene co-expression network, and DEGs revealed 16 genes involved in rapeseed root development under LN stress. Previous studies have reported that the homologs of seven out of sixteen potential genes control root growth and NUE. These findings revealed the genetic basis underlying nitrogen stress and provided worthwhile SNPs/genes information for the genetic improvement of NUE in rapeseed.
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Affiliation(s)
- Nazir Ahmad
- Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences/Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture and Rural Affairs, Wuhan 430062, China; (N.A.); (B.S.); (S.I.); (L.K.); (Z.T.); (X.W.)
| | - Bin Su
- Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences/Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture and Rural Affairs, Wuhan 430062, China; (N.A.); (B.S.); (S.I.); (L.K.); (Z.T.); (X.W.)
| | - Sani Ibrahim
- Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences/Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture and Rural Affairs, Wuhan 430062, China; (N.A.); (B.S.); (S.I.); (L.K.); (Z.T.); (X.W.)
- Department of Plant Biology, Faculty of Life Sciences, College of Physical and Pharmaceutical Sciences, Bayero University, P.M.B. 3011, Kano 700006, Nigeria
| | - Lieqiong Kuang
- Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences/Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture and Rural Affairs, Wuhan 430062, China; (N.A.); (B.S.); (S.I.); (L.K.); (Z.T.); (X.W.)
| | - Ze Tian
- Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences/Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture and Rural Affairs, Wuhan 430062, China; (N.A.); (B.S.); (S.I.); (L.K.); (Z.T.); (X.W.)
| | - Xinfa Wang
- Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences/Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture and Rural Affairs, Wuhan 430062, China; (N.A.); (B.S.); (S.I.); (L.K.); (Z.T.); (X.W.)
- Hubei Hongshan Laboratory, Wuhan 430070, China
| | - Hanzhong Wang
- Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences/Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture and Rural Affairs, Wuhan 430062, China; (N.A.); (B.S.); (S.I.); (L.K.); (Z.T.); (X.W.)
- Hubei Hongshan Laboratory, Wuhan 430070, China
- Correspondence: (H.W.); (X.D.)
| | - Xiaoling Dun
- Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences/Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture and Rural Affairs, Wuhan 430062, China; (N.A.); (B.S.); (S.I.); (L.K.); (Z.T.); (X.W.)
- Correspondence: (H.W.); (X.D.)
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20
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Liu S, Teng Z, Liu H, Wang T, Xu Q, Zhang X, Jiang M, Wang C, Huang W, Pang H. A Ce–UiO‐66 Metal–Organic Framework‐based Graphene‐embedded Photocatalyst with Controllable Activation for Solar Ammonia Fertilizer Production. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202207026] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Sixiao Liu
- Yangzhou University College of Chemistry and Chemical Engineering CHINA
| | - Zhenyuan Teng
- Kyushu Institute of Technology School of Engineering Graduate School of Engineering: Kyushu Kogyo Daigaku Kogakubu Daigakuin Kogakufu Department of Applied Chemistry CHINA
| | - Hang Liu
- Yangzhou University College of Chemistry and Chemical Engineering CHINA
| | - Tianyi Wang
- Yangzhou University College of Chemistry and Chemical Engineering CHINA
| | - Qiang Xu
- Yangzhou University College of Chemistry and Chemical Engineering CHINA
| | - Xiuyun Zhang
- Yangzhou University College of Physical Science and Technology CHINA
| | - Min Jiang
- Yangzhou University College of Agriculture CHINA
| | - Chengyin Wang
- Yangzhou University College of Chemistry and Chemical Engineering CHINA
| | - Wei Huang
- Nanjing University of Posts and Telecommunications State Key Laboratory of Organic Electronics and Information Displays & Institute of Advanced Materials CHINA
| | - Huan Pang
- Yangzhou University College of Chemistry and Chemical Engineering Siwangting road, NO.180 225002 Yangzhou CHINA
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21
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Pool S, Francés F, Garcia-Prats A, Puertes C, Pulido-Velazquez M, Sanchis-Ibor C, Schirmer M, Yang H, Jiménez-Martínez J. Impact of a transformation from flood to drip irrigation on groundwater recharge and nitrogen leaching under variable climatic conditions. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 825:153805. [PMID: 35157867 DOI: 10.1016/j.scitotenv.2022.153805] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/23/2021] [Revised: 02/04/2022] [Accepted: 02/07/2022] [Indexed: 06/14/2023]
Abstract
The sustainability of agriculture in the Mediterranean climate is challenged by high irrigation water demands and nitrogen fertilizer losses to the environment, causing significant pressure on groundwater resources and groundwater-dependent ecosystems. Advanced irrigation technologies and improved fertilizer management have been promoted as key solutions to reduce the agricultural impact on aquatic systems. However, it remains unclear how different irrigation-fertilizer practices perform on the long-term under a highly variable climate, such as the Mediterranean one. Here, we conduct hydrological simulations over a fifty-year period to quantify the magnitude and dynamics of groundwater recharge and nitrogen leaching under five real-case irrigation-fertilizer practices observed in Valencia (eastern Spain). The Valencian Region is the largest citrus-producing region of Europe and current irrigation-fertilizer practices reflect the ongoing transformation of irrigation systems from flood to drip irrigation. Our simulations highlight three major implications of the irrigation transformation for groundwater resources. First, the transformation from flood to drip irrigation reduces the recharge fraction (19% vs. 16%) and especially the nitrogen leaching fraction (33% vs. 18%) on the long term. Second, the long-term performance of the two irrigation practices is subject to substantial inter-annual differences controlled by precipitation variability. The sensitivity of recharge and nitrogen leaching to annual meteorological conditions is stronger in drip irrigation, which eventually leads to a similar performance of flood and drip irrigation in wet years if fertilizer inputs are similar. Third, we identify a pronounced year-to-year nitrogen memory in the soil, whereby an enhanced (decreased) nitrogen leaching is observed after anomalously dry (wet) years, affecting the performance of irrigation-fertilizer practices. Overall, the study demonstrates the highly variable nature of the performance of irrigation-fertilizer practices, and the major findings can guide future efforts in designing sustainable water management strategies for agricultural areas with a Mediterranean climate.
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Affiliation(s)
- Sandra Pool
- Eawag, Swiss Federal Institute of Aquatic Science and Technology, Department Water Resources and Drinking Water, Überlandstrasse 133, 8600 Dübendorf, Switzerland; Eawag, Swiss Federal Institute of Aquatic Science and Technology, Department Systems Analysis, Integrated Assessment and Modelling, Überlandstrasse 133, 8600 Dübendorf, Switzerland.
| | - Félix Francés
- Universitat Politècnica de València, Research Institute of Water and Environmental Engineering (IIAMA), Camí de Vera s/n, 46022 Valencia, Spain
| | - Alberto Garcia-Prats
- Universitat Politècnica de València, Research Institute of Water and Environmental Engineering (IIAMA), Camí de Vera s/n, 46022 Valencia, Spain
| | - Cristina Puertes
- Universitat Politècnica de València, Research Institute of Water and Environmental Engineering (IIAMA), Camí de Vera s/n, 46022 Valencia, Spain; TYPSA Consulting Engineers & Architects, C/ Botiguers, 5 - 5°, 46980 Paterna, Spain
| | - Manuel Pulido-Velazquez
- Universitat Politècnica de València, Research Institute of Water and Environmental Engineering (IIAMA), Camí de Vera s/n, 46022 Valencia, Spain
| | - Carles Sanchis-Ibor
- Universitat Politècnica de València, Valencian Center for Irrigation Studies, Camí de Vera s/n, 46022 Valencia, Spain
| | - Mario Schirmer
- Eawag, Swiss Federal Institute of Aquatic Science and Technology, Department Water Resources and Drinking Water, Überlandstrasse 133, 8600 Dübendorf, Switzerland; University of Neuchâtel, Centre of Hydrogeology and Geothermics (CHYN), Rue Emile-Argand 11, 2000 Neuchâtel, Switzerland
| | - Hong Yang
- Eawag, Swiss Federal Institute of Aquatic Science and Technology, Department Systems Analysis, Integrated Assessment and Modelling, Überlandstrasse 133, 8600 Dübendorf, Switzerland; University of Basel, Department of Environmental Science, Bernoullistrasse 32, 4056 Basel, Switzerland
| | - Joaquín Jiménez-Martínez
- Eawag, Swiss Federal Institute of Aquatic Science and Technology, Department Water Resources and Drinking Water, Überlandstrasse 133, 8600 Dübendorf, Switzerland; ETH Zürich, Department of Civil, Environmental and Geomatic Engineering, Stefano-Franscini-Platz 5, 8093 Zürich, Switzerland.
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22
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Communicating Nitrogen Loss Mechanisms for Improving Nitrogen Use Efficiency Management, Focused on Global Wheat. NITROGEN 2022. [DOI: 10.3390/nitrogen3020016] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
Abstract
Nitrogen (N) losses are a major environmental issue. Globally, crop N fertilizer applications are excessive, and N use efficiency (NUE) is low. N loss represents a significant economic loss to the farmer. NUE is difficult to quantify in real time because of the multiple chemical–biological–physical factors interacting. While there is much scientific understanding of N interactions in the plant–soil system, there is little formal expression of scientific knowledge in farm practice. The objective of this study was to clearly define the factors controlling NUE in wheat production, focusing on N inputs, flows, transformations, and outputs from the plant–soil system. A series of focus groups were conducted with professional agronomists and industry experts, and their technical information was considered alongside a structured literature review. To express this understanding, clear graphical representations are provided in the text. The analysis of the NUE processes revealed 16 management interventions which could be prioritized to increase farm nitrogen use efficiency. These management interventions were grouped into three categories—inputs, flow between pools, and outputs—and include management options through the range of application errors, fertilizer input choice, root development, pests and disease, soil structure, harvesting and storage errors, and soil resources of water, micronutrients, carbon, nitrogen, and pH. It was noted that technical solutions such as fertilizer formulation and managing organic matter require significant supply chain upgrades. It was also noted that farm-scale decision support would be best managed using a risk/probability-based recommender system rather than generic guidelines.
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23
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Chen Z, Ren S, Qin R, Nie P. Rapid Detection of Different Types of Soil Nitrogen Using Near-Infrared Hyperspectral Imaging. Molecules 2022; 27:molecules27062017. [PMID: 35335381 PMCID: PMC8950398 DOI: 10.3390/molecules27062017] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2022] [Revised: 03/15/2022] [Accepted: 03/17/2022] [Indexed: 12/01/2022] Open
Abstract
Rapid and accurate determination of soil nitrogen supply capacity by detecting nitrogen content plays an important role in guiding agricultural production activities. In this study, near-infrared hyperspectral imaging (NIR-HSI) combined with two spectral preprocessing algorithms, two characteristic wavelength selection algorithms and two machine learning algorithms were applied to determine the content of soil nitrogen. Two types of soils (laterite and loess, collected in 2020) and three types of nitrogen fertilizers, namely, ammonium bicarbonate (ammonium nitrogen, NH4-N), sodium nitrate (nitrate nitrogen, NO3-N) and urea (urea nitrogen, urea-N), were studied. The NIR characteristic peaks of three types of nitrogen were assigned and regression models were established. By comparing the model average performance indexes after 100 runs, the best model suitable for the detection of nitrogen in different types was obtained. For NH4-N, R2p = 0.92, RMSEP = 0.77% and RPD = 3.63; for NO3-N, R2p = 0.92, RMSEP = 0.74% and RPD = 4.17; for urea-N, R2p = 0.96, RMSEP = 0.57% and RPD = 5.24. It can therefore be concluded that HSI spectroscopy combined with multivariate models is suitable for the high-precision detection of various soil N in soils. This study provided a research basis for the development of precision agriculture in the future.
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Affiliation(s)
- Zhuoyi Chen
- College of Biosystems Engineering and Food Science, Zhejiang University, Hangzhou 310058, China; (Z.C.); (S.R.); (R.Q.)
- Key Laboratory of Sensors Sensing, Ministry of Agriculture, Zhejiang University, Hangzhou 310058, China
| | - Shijie Ren
- College of Biosystems Engineering and Food Science, Zhejiang University, Hangzhou 310058, China; (Z.C.); (S.R.); (R.Q.)
- Key Laboratory of Sensors Sensing, Ministry of Agriculture, Zhejiang University, Hangzhou 310058, China
| | - Ruimiao Qin
- College of Biosystems Engineering and Food Science, Zhejiang University, Hangzhou 310058, China; (Z.C.); (S.R.); (R.Q.)
- Key Laboratory of Sensors Sensing, Ministry of Agriculture, Zhejiang University, Hangzhou 310058, China
| | - Pengcheng Nie
- College of Biosystems Engineering and Food Science, Zhejiang University, Hangzhou 310058, China; (Z.C.); (S.R.); (R.Q.)
- Key Laboratory of Sensors Sensing, Ministry of Agriculture, Zhejiang University, Hangzhou 310058, China
- State Key Laboratory of Modern Optical Instrumentation, Zhejiang University, Hangzhou 310058, China
- Correspondence: ; Tel.: +86-0571-8898-2456
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24
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Sunflower Photosynthetic Characteristics, Nitrogen Uptake, and Nitrogen Use Efficiency under Different Soil Salinity and Nitrogen Applications. WATER 2022. [DOI: 10.3390/w14060982] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Understanding salinity and fertilizer interaction is of great importance to improve crop production and fertilizer use efficiency in saline areas. To evaluate the interactive effects of different soil salinity levels and nitrogen (N) applications rates on the sunflower photosynthetic characteristics of N uptake and N use efficiency, a two-year field experiment was conducted in Hetao Irrigation District, China. The experiment consisted of three initial salinity (IS) levels expressed as the electrical conductivity of a saturated soil extract (ECe) (S0: 1.72–2.61 dS/m; S1: 4.73–5.90 dS/m; S2: 6.85–9.04 dS/m) and four N rates (45, 90, 135, and 180 kg/ha), referred as N0–N3, respectively. The results indicated that the net photosynthetic rate (Pn) of sunflowers treated with S0 and S1 levels both had a significant decrease in the bud stage, and then reached their maximum at anthesis. However, during the crop cycle, the Pn at S2 level only had small fluctuations and still remained at a high level (>40 μmol CO2/(m2 s)) at the early mature stage. When increasing IS levels from S0 to S1, the plant N uptake (PNU) under the same N rates were only decreased by less than 10% at maturity, whereas the decline was expanded to 17.2–45.7% from S1 to S2. Additionally, though applying the N2 rate could not increase sunflower PNU at the S0 and S1 levels, its N use efficiency was better than those under N3. Meanwhile, at the S2 level, the application of the N0 rate produced a higher N productive efficiency (NPE) and N uptake efficiency (NUPE) than the other N rates. Therefore, our study proposed recommended rates of N fertilizer (S0 and S1: 135 kg/ha, S2: 45 kg/ha) for sunflowers under different saline conditions.
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25
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Management Strategies to Mitigate N2O Emissions in Agriculture. Life (Basel) 2022; 12:life12030439. [PMID: 35330190 PMCID: PMC8949344 DOI: 10.3390/life12030439] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2022] [Revised: 03/03/2022] [Accepted: 03/07/2022] [Indexed: 12/25/2022] Open
Abstract
The concentration of greenhouse gases (GHGs) in the atmosphere has been increasing since the beginning of the industrial revolution. Nitrous oxide (N2O) is one of the mightiest GHGs, and agriculture is one of the main sources of N2O emissions. In this paper, we reviewed the mechanisms triggering N2O emissions and the role of agricultural practices in their mitigation. The amount of N2O produced from the soil through the combined processes of nitrification and denitrification is profoundly influenced by temperature, moisture, carbon, nitrogen and oxygen contents. These factors can be manipulated to a significant extent through field management practices, influencing N2O emission. The relationships between N2O occurrence and factors regulating it are an important premise for devising mitigation strategies. Here, we evaluated various options in the literature and found that N2O emissions can be effectively reduced by intervening on time and through the method of N supply (30–40%, with peaks up to 80%), tillage and irrigation practices (both in non-univocal way), use of amendments, such as biochar and lime (up to 80%), use of slow-release fertilizers and/or nitrification inhibitors (up to 50%), plant treatment with arbuscular mycorrhizal fungi (up to 75%), appropriate crop rotations and schemes (up to 50%), and integrated nutrient management (in a non-univocal way). In conclusion, acting on N supply (fertilizer type, dose, time, method, etc.) is the most straightforward way to achieve significant N2O reductions without compromising crop yields. However, tuning the rest of crop management (tillage, irrigation, rotation, etc.) to principles of good agricultural practices is also advisable, as it can fetch significant N2O abatement vs. the risk of unexpected rise, which can be incurred by unwary management.
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26
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Galindo FS, Pagliari PH, Fernandes GC, Rodrigues WL, Boleta EHM, Jalal A, Céu EGO, Lima BHD, Lavres J, Teixeira Filho MCM. Improving Sustainable Field-Grown Wheat Production With Azospirillum brasilense Under Tropical Conditions: A Potential Tool for Improving Nitrogen Management. FRONTIERS IN ENVIRONMENTAL SCIENCE 2022. [DOI: 10.3389/fenvs.2022.821628] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
Sustainable intensification of cropping systems requires to increase productivity and nutrients use efficiency while reducing negative impacts of agricultural management practices on ecosystem and environment. Plant growth-promoting rhizobacteria (PGPR) inoculations are considered one of the most promising and safe strategy to alleviate environmental alterations in context of climatic extremes to improve plant nutrition while reducing dependency of nitrogen (N) fertilizer application. This study investigated the interactive effects of N levels and inoculation with A. brasilense on plant biomass, grain yield, agronomic efficiency (AE) of applied N, apparent N-fertilizer recovery (AFR) and N content in plant targeting economic feasibility of wheat production system. The field trial tested 4 N application levels applied in side-dressing (control, low, average and high; named 0, 50, 100 and 200 kg N ha−1) and two inoculations (without and with A. brasilense seed inoculation). The results exhibited that inoculation with A. brasilense enhanced AE, AFR and N uptake in wheat plants with increased root and shoot N accumulation and grain N accumulation under average and high N application levels. In addition, inoculation increased root and shoot biomass, leading to a yield increase of 10.3% compared with non-inoculated plants. Wheat plant inoculation associated with application of the average N level provided the greatest profitability. Furthermore, results showed that reducing N fertilization from 100 to 50 kg N ha−1 along A. brasilense inoculation led to an increase in operating profit of 10.5%. In view of low economic cost, ease of application, and high probability of a positive response by wheat crops, even associated with different N application levels, the inoculation with A. brasilense prone to be a key sustainable management practice to improve wheat production under tropical conditions. This practice has the potential to increase wheat grain yield, N use and uptake, and overall farm profitability.
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27
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Kubiku FNM, Mandumbu R, Nyamadzawo G, Nyamangara J. Field edge rainwater harvesting and inorganic fertilizers for improved sorghum ( Sorghum bicolor L.) yields in semi-arid farming regions of Marange, Zimbabwe. Heliyon 2022; 8:e08859. [PMID: 35169642 PMCID: PMC8829584 DOI: 10.1016/j.heliyon.2022.e08859] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2021] [Revised: 06/30/2021] [Accepted: 01/26/2022] [Indexed: 11/25/2022] Open
Abstract
Sorghum (Sorghum bicolor L.) is mainly cultivated in marginal areas of Zimbabwe, where soil fertility is poor and rainfall is low, erratic, and poorly distributed, leading to low yields. The study aimed to determine the effect of tied contour (TC) and in-contour infiltration pits (IP) rainwater harvesting (RWH) methods and varying nitrogen fertilizer application rates on the yield of two sorghum varieties, Macia and Sc Sila. A split-split plot experiment was laid out, with the main plot factor being the RWH method, the subplot factor being sorghum variety, the sub-sub plot factor being nitrogen application, and the sub-sub-sub plot factor being the plant distance from the RWH method. The experiment was done at Mt Zonwe's small-scale farming community in the Mutare region from 2016/17 to 2018/19. The results revealed that TC and IP increased the gravimetric water content (gwc) of the soil. The gwc decreased gradually as the distance from the rainwater RWH method increased (0–5 m > 5–10 m > 10–15 m), with the 2016/17 season having the maximum gwc. In all seasons, TC and IP yielded much more sorghum grain than standard contour (SC). Sorghum grain production was significantly greater at all nitrogen application rates and consistently higher at all plant distances from the RWH method in the 2016/17 season with more rainfall. In comparison to TC and IP, the SC had significantly lower grain yield at all nitrogen application rates. At all plant distances from the RWH method, TC and IP had significantly higher grain production than SC in each variety of sorghum.
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Affiliation(s)
- F N M Kubiku
- Bindura University of Science Education, Department of Environmental Science, P. Bag 1020, Bindura, Zimbabwe
| | - R Mandumbu
- Bindura University of Science Education, Department of Crop Science, P. Bag 1020, Bindura, Zimbabwe
| | - G Nyamadzawo
- University of Zimbabwe, Faculty of Agriculture, Environment and Food Systems, P. O. Box Mp167, Mt Pleasant, Harare, Zimbabwe
| | - J Nyamangara
- Marondera University of Agricultural Sciences and Technology, Department of Environmental Science and Technology, P. O. Box 35, Marondera, Zimbabwe
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28
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Wang L, Qin T, Zhao J, Zhang Y, Wu Z, Cui X, Zhou G, Li C, Guo L, Jiang G. Exploring the nitrogen reservoir of biodegradable household garbage and its potential in replacing synthetic nitrogen fertilizers in China. PeerJ 2022; 10:e12621. [PMID: 35111391 PMCID: PMC8781309 DOI: 10.7717/peerj.12621] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2021] [Accepted: 11/19/2021] [Indexed: 01/06/2023] Open
Abstract
Biodegradable household garbage contains a large amount of nitrogen, which could be used as organic fertilizer to produce organic food and significantly reduce synthetic nitrogen fertilizers. There is limited information on how large the nitrogen reservoir of biodegradable household garbage is in a certain country or region. Here we took China as a case, analyzed the amount of biodegradable household garbage resources and their nitrogen reservoirs. It was noted that the biodegradable household garbage mainly included food waste, waste paper and wood chips, with the amount being 31.56, 29.55, and 6.45 × 106 t·a-1, respectively. Accordingly, the nitrogen reservoirs were 65.31 × 104, 6.80 × 104, and 3.81 × 104 t·a-1 in China. The nitrogen reservoir of food waste accounted for 86% of the total nitrogen reservoir of biodegradable household garbage, which was equivalent to 11% of the amount of actual absorption for synthetic nitrogen fertilizers (6.20 × 106 t·a-1) by agriculture plants in China. Our findings provided a scientific basis for the classification and utilization of biodegradable household garbage.
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Affiliation(s)
- Lan Wang
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, the Chinese 17 Academy of Sciences, Beijing, China,College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, China
| | - Tianyu Qin
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, the Chinese 17 Academy of Sciences, Beijing, China,College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, China
| | - Jianshe Zhao
- Henan Zhongyuan Organic Agriculture Research Institute Co., Ltd., Zhengzhou, China
| | - Yicheng Zhang
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, the Chinese 17 Academy of Sciences, Beijing, China,College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, China
| | - Zhiyuan Wu
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, the Chinese 17 Academy of Sciences, Beijing, China,College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, China
| | - Xiaohui Cui
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, the Chinese 17 Academy of Sciences, Beijing, China,College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, China
| | - Gaifang Zhou
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, the Chinese 17 Academy of Sciences, Beijing, China,College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, China
| | - Caihong Li
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, the Chinese 17 Academy of Sciences, Beijing, China
| | - Liyue Guo
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, the Chinese 17 Academy of Sciences, Beijing, China
| | - Gaoming Jiang
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, the Chinese 17 Academy of Sciences, Beijing, China,College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, China
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29
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Oilseed Rape Cultivars Show Diversity of Root Morphologies with the Potential for Better Capture of Nitrogen. NITROGEN 2021. [DOI: 10.3390/nitrogen2040033] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
Abstract
The worldwide demand for vegetable oils is rising. Oilseed rape (Brassica napus) diversifies cereal dominated crop rotations but requires important nitrogen input. Yet, the root organ is offering an untapped opportunity to improve the nitrogen capture in soil. This study evaluates three culture systems in controlled environment, to observe root morphology and to identify root attributes for superior biomass production and nitrogen use. The phenotypic diversity in a panel of 55 modern winter oilseed rape cultivars was screened in response to two divergent nitrate supplies. Upon in vitro and hydroponic cultures, a large variability for root morphologies was observed. Root biomass and morphological traits positively correlated with shoot biomass or leaf area. The activities of high-affinity nitrate transport systems correlated negatively with the leaf area, while the combined high- and low-affinity systems positively with the total root length. The X-ray computed tomography permitted to visualize the root system in pipes filled with soil. The in vitro root phenotype at germination stage was indicative of lateral root deployment in soil-grown plants. This study highlights great genetic potential in oilseed rape, which could be manipulated to optimize crop root characteristics and nitrogen capture with substantial implications for agricultural production.
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30
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miRNAomic Approach to Plant Nitrogen Starvation. Int J Genomics 2021; 2021:8560323. [PMID: 34796230 PMCID: PMC8595019 DOI: 10.1155/2021/8560323] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2021] [Revised: 10/21/2021] [Accepted: 10/22/2021] [Indexed: 12/02/2022] Open
Abstract
Nitrogen (N) is one of the indispensable nutrients required by plants for their growth, development, and survival. Being a limited nutrient, it is mostly supplied exogenously to the plants, to maintain quality and productivity. The increased use of N fertilizers is associated with high-cost inputs and negative environmental consequences, which necessitates the development of nitrogen-use-efficient plants for sustainable agriculture. Understanding the regulatory mechanisms underlying N metabolism in plants under low N is one of the prerequisites for the development of nitrogen-use-efficient plants. One of the important and recently discovered groups of regulatory molecules acting at the posttranscriptional and translational levels are microRNAs (miRNAs). miRNAs are known to play critical roles in the regulation of gene expression in plants under different stress conditions including N stress. Several classes of miRNAs associated with N metabolism have been identified so far. These nitrogen-responsive miRNAs may provide a platform for a better understanding of the regulation of N metabolism and pave a way for the development of genotypes for better N utilization. The current review presents a brief outline of miRNAs and their regulatory role in N metabolism.
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31
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Optimizing nitrogen supply promotes biomass, physiological characteristics and yield components of soybean ( Glycine max L. Merr.). Saudi J Biol Sci 2021; 28:6209-6217. [PMID: 34759741 PMCID: PMC8568722 DOI: 10.1016/j.sjbs.2021.06.073] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2021] [Revised: 05/28/2021] [Accepted: 06/24/2021] [Indexed: 11/22/2022] Open
Abstract
Avoidable or inappropriate nitrogen (N) fertilizer rates harmfully affect the yield production and ecological value. Therefore, the aims of this study were to optimize the rate and timings of N fertilizer to maximize yield components and photosynthetic parameter of soybean. This field experiment consists of five fertilizer N rates: 0, 75, 150, 225 and 300 kg N ha−1 arranged in main plots and four N fertilization timings: V5 (trifoliate leaf), R2 (full flowering stage) and R4 (full poding stage), and R6 (full seeding stage) growth stages organized as subplots. Results revealed that 225 kg N ha−1 significantly enhanced grain yield components, total chlorophyll (Chl), photosynthetic rate (PN), and total dry biomass and N accumulation by 20%, 16%, 28%, 7% and 12% at R4 stage of soybean. However, stomatal conductance (gs), leaf area index (LAI), intercellular CO2 concentration (Ci) and transpiration rate (E) were increased by 12%, 88%, 10%, 18% at R6 stage under 225 kg N ha−1. Grain yield was significantly associated with photosynthetic characteristics of soybean. In conclusion, the amount of nitrogen 225 kg ha−1 at R4 and R6 stages effectively promoted the yield components and photosynthetic characteristics of soybean.
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Key Words
- Ci, intercellular CO2 concentration
- DW, dry weight
- E, transpiration rate
- GM, grain mass
- GNP, grain number per pod
- GY, grain yield
- Grain yield
- J, journal
- LAI, leaf area index
- Nitrogen rates
- PN, photosynthetic rate
- PNP, pod number per plant
- PPFD, photosynthetic photon flux density
- Photosynthetic characteristics
- R2, R4 and R6, reproductive stage
- TCC, total chlorophyll contents
- TN, total nitrogen
- Timing
- V5, Vegetative stage of five trifoliate leaf
- g, grams
- gs, stomatal conductance
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32
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Yang X, Hill KA, Austin RS, Tian L. Differential Gene Expression of Brachypodium distachyon Roots Colonized by Gluconacetobacter diazotrophicus and the Role of BdCESA8 in the Colonization. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2021; 34:1143-1156. [PMID: 34709058 DOI: 10.1094/mpmi-06-20-0170-r] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Alternatives to synthetic nitrogen fertilizer are needed to reduce the costs of crop production and offset environmental damage. Nitrogen-fixing bacterium Gluconacetobacter diazotrophicus has been proposed as a possible biofertilizer for monocot crop production. However, the colonization of G. diazotrophicus in most monocot crops is limited and deep understanding of the response of host plants to G. diazotrophicus colonization is still lacking. In this study, the molecular response of the monocot plant model Brachypodium distachyon was studied during G. diazotrophicus root colonization. The gene expression profiles of B. distachyon root tissues colonized by G. diazotrophicus were generated via next-generation RNA sequencing, and investigated through gene ontology and metabolic pathway analysis. The RNA sequencing results indicated that Brachypodium is actively involved in G. diazotrophicus colonization via cell wall synthesis. Jasmonic acid, ethylene, gibberellin biosynthesis. nitrogen assimilation, and primary and secondary metabolite pathways are also modulated to accommodate and control the extent of G. diazotrophicus colonization. Cellulose synthesis is significantly downregulated during colonization. The loss of function mutant for Brachypodium cellulose synthase 8 (BdCESA8) showed decreased cellulose content in xylem and increased resistance to G. diazotrophicus colonization. This result suggested that the cellulose synthesis of the secondary cell wall is involved in G. diazotrophicus colonization. The results of this study provide insights for future research in regard to gene manipulation for efficient colonization of nitrogen-fixing bacteria in Brachypodium and monocot crops.[Formula: see text] Copyright © 2021 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license.
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Affiliation(s)
- Xuan Yang
- Department of Biology, University of Western Ontario, London, ON N6A 5B7, Canada
- London Research and Development Centre, Agriculture and Agri-Food Canada, London, ON N5V 4T3, Canada
| | - Kathleen A Hill
- Department of Biology, University of Western Ontario, London, ON N6A 5B7, Canada
| | - Ryan S Austin
- London Research and Development Centre, Agriculture and Agri-Food Canada, London, ON N5V 4T3, Canada
| | - Lining Tian
- London Research and Development Centre, Agriculture and Agri-Food Canada, London, ON N5V 4T3, Canada
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Škarpa P, Mikušová D, Antošovský J, Kučera M, Ryant P. Oil-Based Polymer Coatings on CAN Fertilizer in Oilseed Rape ( Brassica napus L.) Nutrition. PLANTS (BASEL, SWITZERLAND) 2021; 10:1605. [PMID: 34451650 PMCID: PMC8398497 DOI: 10.3390/plants10081605] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/26/2021] [Revised: 07/22/2021] [Accepted: 08/03/2021] [Indexed: 11/16/2022]
Abstract
Fertilizer coating can increase the efficiency of N fertilizers and reduce their negative impact on the environment. This may be achieved by the utilization of biodegradable natural coating materials instead of polyurethane-based polymers. The aim of this study was to detect the effect of calcium ammonium nitrate (CAN) fertilizer coated with modified conventional polyurethane enhanced with vegetable oils on the yield and quality of Brassica napus L. compared to CAN fertilizer with a vegetable oil-based polymer and to assess the risks of nitrogen loss. Three types of treatments were tested for both coated fertilizers: divided application (CAN, coated CAN), a single application of coated CAN, and a single application of CAN with coated CAN (1:2). A single application of coated CAN with both types of coating in the growth stage of the 9th true leaf significantly increased the yield, the thousand seed weight, and oil production compared to the uncoated CAN. The potential of using coated CAN may be seen in a slow nitrogen release ensuring the nitrogen demand for rapeseed plants throughout vegetation and eliminating the risk of its loss. The increased potential of NH4+ volatilization and NO3- leaching were determined using the uncoated CAN fertilizer compared to the coated variants. Oil-based polymer coatings on CAN fertilizer can be considered as an adequate replacement for partially modified conventional polyurethane.
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Affiliation(s)
- Petr Škarpa
- Faculty of AgriSciences, Mendel University in Brno, Zemědělská 1, 613 00 Brno, Czech Republic; (P.Š.); (D.M.); (J.A.)
| | - Dominika Mikušová
- Faculty of AgriSciences, Mendel University in Brno, Zemědělská 1, 613 00 Brno, Czech Republic; (P.Š.); (D.M.); (J.A.)
| | - Jiří Antošovský
- Faculty of AgriSciences, Mendel University in Brno, Zemědělská 1, 613 00 Brno, Czech Republic; (P.Š.); (D.M.); (J.A.)
| | - Milan Kučera
- Research Institute of Chemical Technology (VUCHT a.s.), Nobelova 34, 836 03 Bratislava, Slovakia;
| | - Pavel Ryant
- Faculty of AgriSciences, Mendel University in Brno, Zemědělská 1, 613 00 Brno, Czech Republic; (P.Š.); (D.M.); (J.A.)
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He L, Teng L, Tang X, Long W, Wang Z, Wu Y, Liao L. Agro-morphological and metabolomics analysis of low nitrogen stress response in Axonopus compressus. AOB PLANTS 2021; 13:plab022. [PMID: 34234932 PMCID: PMC8256886 DOI: 10.1093/aobpla/plab022] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 04/28/2021] [Indexed: 05/14/2023]
Abstract
Axonopus compressus also known as carpet grass is a robust, stoloniferous grass that can grow in minimal fertilization and resists well to abiotic and biotic stresses including low nitrogen (LN) stress. This study aimed at characterizing the agro-morphological and metabolome responses to LN in carpet grass leaves. Under LN stress, carpet grass increased yellowness of leaves and root dry matter while reduced turf quality and shoot dry weight. The metabolome comparison between samples from optimum and LN conditions indicated 304 differentially accumulated metabolites (DAMs), which could be classified into 12 major and 31 subclasses. The results revealed that the leaf tissues accumulated more anthocyanins and other flavonoid metabolites under LN stress. Conversely, amino acids, nucleic acids and their derivatives were reduced in response to LN stress. The overall evaluation of individual metabolites and pathways, and previous studies on metabolomes indicated that carpet grass reduced its energy consumption in leaves and increased the level of organic acid metabolism and secondary metabolism in order to resist LN stress conditions.
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Affiliation(s)
- Li He
- College of Life Science, Jinggangshan University, Ji’an, Jiangxi 343009, China
| | - Li Teng
- Key Laboratory of Genetics and Germplasm Innovation of Tropical Special Forest Trees and Ornamental Plants, Ministry of Education, College of Forestry, Hainan University, Haikou, Hainan 570228, China
| | - Xiaomin Tang
- Key Laboratory of Genetics and Germplasm Innovation of Tropical Special Forest Trees and Ornamental Plants, Ministry of Education, College of Forestry, Hainan University, Haikou, Hainan 570228, China
| | - Wanwan Long
- College of Life Science, Jinggangshan University, Ji’an, Jiangxi 343009, China
| | - Zhiyong Wang
- Key Laboratory of Genetics and Germplasm Innovation of Tropical Special Forest Trees and Ornamental Plants, Ministry of Education, College of Forestry, Hainan University, Haikou, Hainan 570228, China
| | - Yang Wu
- College of Life Science, Jinggangshan University, Ji’an, Jiangxi 343009, China
| | - Li Liao
- Key Laboratory of Genetics and Germplasm Innovation of Tropical Special Forest Trees and Ornamental Plants, Ministry of Education, College of Forestry, Hainan University, Haikou, Hainan 570228, China
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Zhang P, Guo Z, Ullah S, Melagraki G, Afantitis A, Lynch I. Nanotechnology and artificial intelligence to enable sustainable and precision agriculture. NATURE PLANTS 2021; 7:864-876. [PMID: 34168318 DOI: 10.1038/s41477-021-00946-6] [Citation(s) in RCA: 71] [Impact Index Per Article: 23.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/26/2020] [Accepted: 05/17/2021] [Indexed: 06/13/2023]
Abstract
Climate change, increasing populations, competing demands on land for production of biofuels and declining soil quality are challenging global food security. Finding sustainable solutions requires bold new approaches and integration of knowledge from diverse fields, such as materials science and informatics. The convergence of precision agriculture, in which farmers respond in real time to changes in crop growth with nanotechnology and artificial intelligence, offers exciting opportunities for sustainable food production. Coupling existing models for nutrient cycling and crop productivity with nanoinformatics approaches to optimize targeting, uptake, delivery, nutrient capture and long-term impacts on soil microbial communities will enable design of nanoscale agrochemicals that combine optimal safety and functionality profiles.
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Affiliation(s)
- Peng Zhang
- School of Geography, Earth and Environmental Sciences, University of Birmingham, Birmingham, UK.
| | - Zhiling Guo
- School of Geography, Earth and Environmental Sciences, University of Birmingham, Birmingham, UK
| | - Sami Ullah
- School of Geography, Earth and Environmental Sciences, University of Birmingham, Birmingham, UK
| | - Georgia Melagraki
- Division of Physical Sciences and Applications, Hellenic Military Academy, Vari, Greece
| | | | - Iseult Lynch
- School of Geography, Earth and Environmental Sciences, University of Birmingham, Birmingham, UK
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Yoshiura CA, Venturini AM, Braga LPP, da França AG, de Lyra MDCCP, Tsai SM, Rodrigues JLM. Responses of Low-Cost Input Combinations on the Microbial Structure of the Maize Rhizosphere for Greenhouse Gas Mitigation and Plant Biomass Production. FRONTIERS IN PLANT SCIENCE 2021; 12:683658. [PMID: 34276734 PMCID: PMC8278312 DOI: 10.3389/fpls.2021.683658] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/21/2021] [Accepted: 05/18/2021] [Indexed: 06/13/2023]
Abstract
The microbial composition of the rhizosphere and greenhouse gas (GHG) emissions under the most common input combinations in maize (Zea mays L.) cultivated in Brazil have not been characterized yet. In this study, we evaluated the influence of maize stover coverage (S), urea-topdressing fertilization (F), and the microbial inoculant Azospirillum brasilense (I) on soil GHG emissions and rhizosphere microbial communities during maize development. We conducted a greenhouse experiment and measured methane (CH4), carbon dioxide (CO2), and nitrous oxide (N2O) fluxes from soil cultivated with maize plants under factorial combinations of the inputs and a control treatment (F, I, S, FI, FS, IS, FIS, and control). Plant biomass was evaluated, and rhizosphere soil samples were collected at V5 and V15 stages and DNA was extracted. The abundance of functional genes (mcrA, pmoA, nifH, and nosZ) was determined by quantitative PCR (qPCR) and the structure of the microbial community was assessed through 16S rRNA amplicon sequencing. Our results corroborate with previous studies which used fewer input combinations and revealed different responses for the following three inputs: F increased N2O emissions around 1 week after application; I tended to reduce CH4 and CO2 emissions, acting as a plant growth stimulator through phytohormones; S showed an increment for CO2 emissions by increasing carbon-use efficiency. IS and FIS treatments presented significant gains in biomass that could be related to Actinobacteria (19.0%) and Bacilli (10.0%) in IS, and Bacilli (9.7%) in FIS, which are the microbial taxa commonly associated with lignocellulose degradation. Comparing all factors, the IS (inoculant + maize stover) treatment was considered the best option for plant biomass production and GHG mitigation since FIS provides small gains toward the management effort of F application.
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Affiliation(s)
- Caio Augusto Yoshiura
- Cell and Molecular Biology Laboratory, Center for Nuclear Energy in Agriculture, University of São Paulo, Piracicaba, Brazil
| | - Andressa Monteiro Venturini
- Cell and Molecular Biology Laboratory, Center for Nuclear Energy in Agriculture, University of São Paulo, Piracicaba, Brazil
| | - Lucas Palma Perez Braga
- Cell and Molecular Biology Laboratory, Center for Nuclear Energy in Agriculture, University of São Paulo, Piracicaba, Brazil
| | - Aline Giovana da França
- Cell and Molecular Biology Laboratory, Center for Nuclear Energy in Agriculture, University of São Paulo, Piracicaba, Brazil
| | | | - Siu Mui Tsai
- Cell and Molecular Biology Laboratory, Center for Nuclear Energy in Agriculture, University of São Paulo, Piracicaba, Brazil
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Perich G, Aasen H, Verrelst J, Argento F, Walter A, Liebisch F. Crop Nitrogen Retrieval Methods for Simulated Sentinel-2 Data Using In-Field Spectrometer Data. REMOTE SENSING 2021; 13:2404. [PMID: 36082363 PMCID: PMC7613346 DOI: 10.3390/rs13122404] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Nitrogen (N) is one of the key nutrients supplied in agricultural production worldwide. Over-fertilization can have negative influences on the field and the regional level (e.g., agro-ecosystems). Remote sensing of the plant N of field crops presents a valuable tool for the monitoring of N flows in agro-ecosystems. Available data for validation of satellite-based remote sensing of N is scarce. Therefore, in this study, field spectrometer measurements were used to simulate data of the Sentinel-2 (S2) satellites developed for vegetation monitoring by the ESA. The prediction performance of normalized ratio indices (NRIs), random forest regression (RFR) and Gaussian processes regression (GPR) for plant-N-related traits was assessed on a diverse real-world dataset including multiple crops, field sites and years. The plant N traits included the mass-based N measure, N concentration in the biomass (Nconc), and an area-based N measure approximating the plant N uptake (NUP). Spectral indices such as normalized ratio indices (NRIs) performed well, but the RFR and GPR methods outperformed the NRIs. Key spectral bands for each trait were identified using the RFR variable importance measure and the Gaussian processes regression band analysis tool (GPR-BAT), highlighting the importance of the short-wave infrared (SWIR) region for estimation of plant Nconc-and to a lesser extent the NUP. The red edge (RE) region was also important. The GPR-BAT showed that five bands were sufficient for plant N trait and leaf area index (LAI) estimation and that a surplus of bands effectively reduced prediction performance. A global sensitivity analysis (GSA) was performed on all traits simultaneously, showing the dominance of the LAI in the mixed remote sensing signal. To delineate the plant-N-related traits from this signal, regional and/or national data collection campaigns producing large crop spectral libraries (CSL) are needed. An improved database will likely enable the mapping of N at the agro-ecosystem level or for use in precision farming by farmers in the future.
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Affiliation(s)
- Gregor Perich
- Group of Crop Science, Institute of Agricultural Sciences, Department of Environmental Systems Science, ETH Zurich, 8092 Zurich, Switzerland
| | - Helge Aasen
- Group of Crop Science, Institute of Agricultural Sciences, Department of Environmental Systems Science, ETH Zurich, 8092 Zurich, Switzerland
| | - Jochem Verrelst
- Image Processing Laboratory (IPL), University of Valencia Science Park, 46980 Valencia, Spain
| | - Francesco Argento
- Group of Crop Science, Institute of Agricultural Sciences, Department of Environmental Systems Science, ETH Zurich, 8092 Zurich, Switzerland
| | - Achim Walter
- Group of Crop Science, Institute of Agricultural Sciences, Department of Environmental Systems Science, ETH Zurich, 8092 Zurich, Switzerland
| | - Frank Liebisch
- Group of Crop Science, Institute of Agricultural Sciences, Department of Environmental Systems Science, ETH Zurich, 8092 Zurich, Switzerland
- Water Protection and Substance Flows, Department Agroecology and Environment, Agroscope, 8046 Zürich, Switzerland
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38
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Khalili P, Masud B, Qian B, Mezbahuddin S, Dyck M, Faramarzi M. Non-stationary response of rain-fed spring wheat yield to future climate change in northern latitudes. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 772:145474. [PMID: 33770871 DOI: 10.1016/j.scitotenv.2021.145474] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/17/2020] [Revised: 01/04/2021] [Accepted: 01/24/2021] [Indexed: 06/12/2023]
Abstract
The non-stationary response of crop growth to changes in hydro-climatic variables makes yield projection uncertain and the design and implementation of adaptation strategies debatable. This study simulated the time-varying behavior of the underlying cause-and-effect mechanisms affecting spring wheat yield (SWY) under various climate change and nitrogen (N) application scenarios in the Red Deer River basin in agricultural lands of the western Canadian Prairies. A calibrated and validated Soil and Water Assessment Tool and Analysis of Variance decomposition methods were utilized to assess the contribution of crop growth parameters, Global Climate Models, Representative Concentration Pathways, and downscaling techniques to the total SWY variance for the 2040-2064 period. The results showed that the cause-and-effect mechanisms, driving crop yield, shifted from water stress (W-stress) dominated (27 days of W-stress days) during the historical period to nitrogen stress (N-stress) dominated (27 to 35 N-stress days) in the future period. It was shown that while higher precipitation, warmer weather, and early snowmelts, along with elevated CO2 may favor SWY in cold regions in the future (up to 50% more yields in some sub-basins), the yield potentials may be limited by N-stress (only up to 0.7% yield increase in some sub-basins). The N-stress might be partially related to the N deficiency in the soil, which can be compensated by N fertilizer application. However, inadequate N uptake due to limited evapotranspiration under elevated atmospheric CO2 might pose restrictions to SWY potentials even in the least N deficient regions. This study uncovers important information on the understanding of spatiotemporal variability of hydrogeochemical processes driving crop yields and the non-stationary response of yields to changing climate. The results also underscore spatiotemporal variability of N-stress due to N deficiency in the soil or N uptake by crops, both of which may restrain SWY by changes in atmospheric CO2 concentrations in the future.
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Affiliation(s)
- Pouya Khalili
- Watershed Science and Modeling Laboratory, Department of Earth and Atmospheric Sciences, Faculty of Science, University of Alberta, Edmonton, AB T6G 2R3, Canada
| | - Badrul Masud
- Watershed Science and Modeling Laboratory, Department of Earth and Atmospheric Sciences, Faculty of Science, University of Alberta, Edmonton, AB T6G 2R3, Canada
| | - Budong Qian
- Ottawa Research and Development Centre, Agriculture and Agri-Food Canada, Ottawa, ON K1A 0C6, Canada
| | - Symon Mezbahuddin
- Natural Resource Management Branch, Alberta Agriculture and Forestry, Edmonton, AB, Canada; Department of Renewable Resources, Faculty of Agricultural Life and Environmental Sciences, University of Alberta, Edmonton, AB T6G 2R3, Canada
| | - Miles Dyck
- Department of Renewable Resources, Faculty of Agricultural Life and Environmental Sciences, University of Alberta, Edmonton, AB T6G 2R3, Canada
| | - Monireh Faramarzi
- Watershed Science and Modeling Laboratory, Department of Earth and Atmospheric Sciences, Faculty of Science, University of Alberta, Edmonton, AB T6G 2R3, Canada.
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Udvardi M, Below FE, Castellano MJ, Eagle AJ, Giller KE, Ladha JK, Liu X, Maaz TM, Nova-Franco B, Raghuram N, Robertson GP, Roy S, Saha M, Schmidt S, Tegeder M, York LM, Peters JW. A Research Road Map for Responsible Use of Agricultural Nitrogen. FRONTIERS IN SUSTAINABLE FOOD SYSTEMS 2021. [DOI: 10.3389/fsufs.2021.660155] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022] Open
Abstract
Nitrogen (N) is an essential but generally limiting nutrient for biological systems. Development of the Haber-Bosch industrial process for ammonia synthesis helped to relieve N limitation of agricultural production, fueling the Green Revolution and reducing hunger. However, the massive use of industrial N fertilizer has doubled the N moving through the global N cycle with dramatic environmental consequences that threaten planetary health. Thus, there is an urgent need to reduce losses of reactive N from agriculture, while ensuring sufficient N inputs for food security. Here we review current knowledge related to N use efficiency (NUE) in agriculture and identify research opportunities in the areas of agronomy, plant breeding, biological N fixation (BNF), soil N cycling, and modeling to achieve responsible, sustainable use of N in agriculture. Amongst these opportunities, improved agricultural practices that synchronize crop N demand with soil N availability are low-hanging fruit. Crop breeding that targets root and shoot physiological processes will likely increase N uptake and utilization of soil N, while breeding for BNF effectiveness in legumes will enhance overall system NUE. Likewise, engineering of novel N-fixing symbioses in non-legumes could reduce the need for chemical fertilizers in agroecosystems but is a much longer-term goal. The use of simulation modeling to conceptualize the complex, interwoven processes that affect agroecosystem NUE, along with multi-objective optimization, will also accelerate NUE gains.
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40
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Imran A, Hakim S, Tariq M, Nawaz MS, Laraib I, Gulzar U, Hanif MK, Siddique MJ, Hayat M, Fraz A, Ahmad M. Diazotrophs for Lowering Nitrogen Pollution Crises: Looking Deep Into the Roots. Front Microbiol 2021; 12:637815. [PMID: 34108945 PMCID: PMC8180554 DOI: 10.3389/fmicb.2021.637815] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2020] [Accepted: 03/24/2021] [Indexed: 12/14/2022] Open
Abstract
During and after the green revolution in the last century, agrochemicals especially nitrogen (N) were extensively used. However, it resulted in a remarkable increase in crop yield but drastically reduced soil fertility; increased the production cost, food prices, and carbon footprints; and depleted the fossil reserves with huge penalties to the environment and ecological sustainability. The groundwater, rivers, and oceans are loaded with N excess which is an environmental catastrophe. Nitrogen emissions (e.g., ammonia, nitrogen oxide, nitrous oxide) play an important role in global climate change and contribute to particulate matter and acid rain causing respiratory problems, cancers, and damage to forests and buildings. Therefore, the nitrogen-polluted planet Earth needs concerted global efforts to avoid the disaster. Improved agricultural N management focuses on the synchronization of crop N demand and N supply along with improving the N-use efficiency of the crops. However, there is very little focus on the natural sources of N available for plants in the form of diazotrophic bacteria present inside or on the root surface and the rhizosphere. These diazotrophs are the mini-nitrogen factories that convert available (78%) atmospheric N2 to ammonia through a process known as "biological nitrogen fixation" which is then taken up by the plants for its metabolic functioning. Diazotrophs also stimulate root architecture by producing plant hormones and hence improve the plant's overall ability to uptake nutrients and water. In recent years, nanotechnology has revolutionized the whole agri-industry by introducing nano-fertilizers and coated/slow-releasing fertilizers. With this in mind, we tried to explore the following questions: To what extent can the crop N requirements be met by diazotroph inoculation? Can N input to agriculture be managed in a way leading to environmental benefits and farmers saving money? Can nanotechnology help in technological advancement of diazotroph application? The review suggests that an integrated technology based on slow-releasing nano-fertilizer combined with diazotrophs should be adopted to decrease nitrogen inputs to the agricultural system. This integrated technology would minimize N pollution and N losses to much extent.
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Affiliation(s)
- Asma Imran
- Division of Soil and Environmental Biotechnology, National Institute for Biotechnology and Genetic Engineering-Campus-Pakistan Institute of Engineering and Applied Sciences (NIBGE-C-PIEAS), Faisalabad, Pakistan
| | - Sughra Hakim
- Division of Soil and Environmental Biotechnology, National Institute for Biotechnology and Genetic Engineering-Campus-Pakistan Institute of Engineering and Applied Sciences (NIBGE-C-PIEAS), Faisalabad, Pakistan
| | - Mohsin Tariq
- Division of Soil and Environmental Biotechnology, National Institute for Biotechnology and Genetic Engineering-Campus-Pakistan Institute of Engineering and Applied Sciences (NIBGE-C-PIEAS), Faisalabad, Pakistan
- Department of Bioinformatics and Biotechnology, Government College University, Faisalabad, Pakistan
- Department of Botany, Government College University, Faisalabad, Pakistan
| | - Muhammad Shoib Nawaz
- Division of Soil and Environmental Biotechnology, National Institute for Biotechnology and Genetic Engineering-Campus-Pakistan Institute of Engineering and Applied Sciences (NIBGE-C-PIEAS), Faisalabad, Pakistan
| | - Iqra Laraib
- Division of Soil and Environmental Biotechnology, National Institute for Biotechnology and Genetic Engineering-Campus-Pakistan Institute of Engineering and Applied Sciences (NIBGE-C-PIEAS), Faisalabad, Pakistan
| | - Umaira Gulzar
- Division of Soil and Environmental Biotechnology, National Institute for Biotechnology and Genetic Engineering-Campus-Pakistan Institute of Engineering and Applied Sciences (NIBGE-C-PIEAS), Faisalabad, Pakistan
- Department of Botany, University of Bagh, Kotli, Pakistan
| | - Muhammad Kashif Hanif
- Division of Soil and Environmental Biotechnology, National Institute for Biotechnology and Genetic Engineering-Campus-Pakistan Institute of Engineering and Applied Sciences (NIBGE-C-PIEAS), Faisalabad, Pakistan
- Department of Biotechnology, Institute of Molecular Biology and Biotechnology, University of Lahore, Sargodha, Pakistan
| | - Muhammad Jawad Siddique
- Division of Soil and Environmental Biotechnology, National Institute for Biotechnology and Genetic Engineering-Campus-Pakistan Institute of Engineering and Applied Sciences (NIBGE-C-PIEAS), Faisalabad, Pakistan
| | - Mahnoor Hayat
- Division of Soil and Environmental Biotechnology, National Institute for Biotechnology and Genetic Engineering-Campus-Pakistan Institute of Engineering and Applied Sciences (NIBGE-C-PIEAS), Faisalabad, Pakistan
| | - Ahmad Fraz
- Division of Soil and Environmental Biotechnology, National Institute for Biotechnology and Genetic Engineering-Campus-Pakistan Institute of Engineering and Applied Sciences (NIBGE-C-PIEAS), Faisalabad, Pakistan
- Department of Bioinformatics and Biotechnology, Government College University, Faisalabad, Pakistan
- Department of Botany, Government College University, Faisalabad, Pakistan
| | - Muhammad Ahmad
- Division of Soil and Environmental Biotechnology, National Institute for Biotechnology and Genetic Engineering-Campus-Pakistan Institute of Engineering and Applied Sciences (NIBGE-C-PIEAS), Faisalabad, Pakistan
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Daly AB, Jilling A, Bowles TM, Buchkowski RW, Frey SD, Kallenbach CM, Keiluweit M, Mooshammer M, Schimel JP, Grandy AS. A holistic framework integrating plant-microbe-mineral regulation of soil bioavailable nitrogen. BIOGEOCHEMISTRY 2021; 154:211-229. [PMID: 34759436 PMCID: PMC8570341 DOI: 10.1007/s10533-021-00793-9] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/18/2020] [Accepted: 04/06/2021] [Indexed: 06/01/2023]
Abstract
UNLABELLED Soil organic nitrogen (N) is a critical resource for plants and microbes, but the processes that govern its cycle are not well-described. To promote a holistic understanding of soil N dynamics, we need an integrated model that links soil organic matter (SOM) cycling to bioavailable N in both unmanaged and managed landscapes, including agroecosystems. We present a framework that unifies recent conceptual advances in our understanding of three critical steps in bioavailable N cycling: organic N (ON) depolymerization and solubilization; bioavailable N sorption and desorption on mineral surfaces; and microbial ON turnover including assimilation, mineralization, and the recycling of microbial products. Consideration of the balance between these processes provides insight into the sources, sinks, and flux rates of bioavailable N. By accounting for interactions among the biological, physical, and chemical controls over ON and its availability to plants and microbes, our conceptual model unifies complex mechanisms of ON transformation in a concrete conceptual framework that is amenable to experimental testing and translates into ideas for new management practices. This framework will allow researchers and practitioners to use common measurements of particulate organic matter (POM) and mineral-associated organic matter (MAOM) to design strategic organic N-cycle interventions that optimize ecosystem productivity and minimize environmental N loss. SUPPLEMENTARY INFORMATION The online version contains supplementary material available at 10.1007/s10533-021-00793-9.
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Affiliation(s)
- Amanda B. Daly
- Department of Natural Resources and the Environment, University of New Hampshire, 56 College Road, Durham, NH 03824 USA
| | - Andrea Jilling
- Department of Plant and Soil Sciences, Oklahoma State University, Stillwater, OK USA
| | - Timothy M. Bowles
- Department of Environmental Science, Policy, and Management, University of California Berkeley, Berkeley, CA USA
| | | | - Serita D. Frey
- Department of Natural Resources and the Environment, University of New Hampshire, 56 College Road, Durham, NH 03824 USA
| | | | - Marco Keiluweit
- School of Earth & Sustainability and Stockbridge School of Agriculture, University of Massachusetts, Amherst, MA USA
| | - Maria Mooshammer
- Department of Environmental Science, Policy, and Management, University of California Berkeley, Berkeley, CA USA
| | - Joshua P. Schimel
- Department of Ecology, Evolution, and Marine Biology, University of California, Santa Barbara, CA USA
| | - A. Stuart Grandy
- Department of Natural Resources and the Environment, University of New Hampshire, 56 College Road, Durham, NH 03824 USA
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42
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Influence of Nitrogen Fertilization Rate on Soil Respiration: A Study Using a Rapid Soil Respiration Assay. NITROGEN 2021. [DOI: 10.3390/nitrogen2020014] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
Abstract
Efficient nitrogen (N) management is one of the primary objectives of agronomic research as N is expensive and a major environmental pollutant. Soil microbes regulate N cycling and soil respiration (SR) measures soil microbial activity. The Comprehensive Assessment of Soil Health (CASH) soil respiration protocol is a rapid test, and a study was designed to approve this test as a potential tool for corn (Zea mays L.) N management. Five locations were selected around South Dakota (SD) where corn received 0, 45, 90, and 180 kg N ha−1 during summer of 2019. Soil samples were collected before planting and at the V6 corn growth stage to measure SR. We found that N fertilization increased SR and the highest SR was recorded at Ipswich (1.94 mg CO2 g−1) while SR was lowest at Bushnell (1.45 mg CO2 g−1). Higher SR was recorded at the sites where no-till farming was practiced, and soil had higher initial nitrate and organic matter content. SR was weakly correlated with corn grain yield, which indicated a potential area for future research. We concluded that split N application or an additional N application at a later growth stage might boost corn productivity in soil with higher microbial activity.
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43
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Chaudhary S, Kalkal M. Rice Transcriptome Analysis Reveals Nitrogen Starvation Modulates Differential Alternative Splicing and Transcript Usage in Various Metabolism-Related Genes. Life (Basel) 2021; 11:285. [PMID: 33801769 PMCID: PMC8066416 DOI: 10.3390/life11040285] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2021] [Revised: 03/23/2021] [Accepted: 03/24/2021] [Indexed: 12/13/2022] Open
Abstract
Nitrogen (N) is crucial for plant growth and development; however, excessive use of N fertilizers cause many problems including environmental damage, degradation of soil fertility, and high cost to the farmers. Therefore, immediate implementation is required to develop N efficient crop varieties. Rice being low nitrogen use efficiency (NUE) and a high demand staple food across the world has become a favorite crop to study the NUE trait. In the current study, we used the publicly available transcriptome data generated from the root and shoot tissues of two rice genotypes IR-64 and Nagina-22 (N-22) under optimum N supply (N+) and chronic N-starvation (N-). A stringent pipeline was applied to detect differentially expressed genes (DEGs), alternatively spliced (DAS) genes, differentially expressed transcripts (DETs) and differential transcript usage (DTU) transcripts in both the varieties and tissues under N+ and N- conditions. The DAS genes and DTU transcripts identified in the study were found to be involved in several metabolic and biosynthesis processes. We suggest alternative splicing (AS) plays an important role in fine-tuning the regulation of metabolic pathways related genes in genotype, tissue, and condition-dependent manner. The current study will help in understanding the transcriptional dynamics of NUE traits in the future.
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Affiliation(s)
- Saurabh Chaudhary
- Cardiff School of Biosciences, Cardiff University, Cardiff CF10 3AX, UK
| | - Meenu Kalkal
- Parasite-Host Biology, National Institute of Malaria Research, Dwarka, New Delhi 110077, India;
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Móring A, Hooda S, Raghuram N, Adhya TK, Ahmad A, Bandyopadhyay SK, Barsby T, Beig G, Bentley AR, Bhatia A, Dragosits U, Drewer J, Foulkes J, Ghude SD, Gupta R, Jain N, Kumar D, Kumar RM, Ladha JK, Mandal PK, Neeraja CN, Pandey R, Pathak H, Pawar P, Pellny TK, Poole P, Price A, Rao DLN, Reay DS, Singh NK, Sinha SK, Srivastava RK, Shewry P, Smith J, Steadman CE, Subrahmanyam D, Surekha K, Venkatesh K, Varinderpal-Singh, Uwizeye A, Vieno M, Sutton MA. Nitrogen Challenges and Opportunities for Agricultural and Environmental Science in India. FRONTIERS IN SUSTAINABLE FOOD SYSTEMS 2021. [DOI: 10.3389/fsufs.2021.505347] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023] Open
Abstract
In the last six decades, the consumption of reactive nitrogen (Nr) in the form of fertilizer in India has been growing rapidly, whilst the nitrogen use efficiency (NUE) of cropping systems has been decreasing. These trends have led to increasing environmental losses of Nr, threatening the quality of air, soils, and fresh waters, and thereby endangering climate-stability, ecosystems, and human-health. Since it has been suggested that the fertilizer consumption of India may double by 2050, there is an urgent need for scientific research to support better nitrogen management in Indian agriculture. In order to share knowledge and to develop a joint vision, experts from the UK and India came together for a conference and workshop on “Challenges and Opportunities for Agricultural Nitrogen Science in India.” The meeting concluded with three core messages: (1) Soil stewardship is essential and legumes need to be planted in rotation with cereals to increase nitrogen fixation in areas of limited Nr availability. Synthetic symbioses and plastidic nitrogen fixation are possibly disruptive technologies, but their potential and implications must be considered. (2) Genetic diversity of crops and new technologies need to be shared and exploited to reduce N losses and support productive, sustainable agriculture livelihoods. (3) The use of leaf color sensing shows great potential to reduce nitrogen fertilizer use (by 10–15%). This, together with the usage of urease inhibitors in neem-coated urea, and better management of manure, urine, and crop residues, could result in a 20–25% improvement in NUE of India by 2030.
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Mohseni A, Hosseini HM, Abbasi F. Evaluation of furrow fertigation on nitrogen supply and losses as a function of maize growth stages. SN APPLIED SCIENCES 2021. [DOI: 10.1007/s42452-020-03998-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022] Open
Abstract
AbstractThe purpose of this study was to evaluate the effects of furrow fertigation on nitrate deep leaching, nitrate runoff losses, and plant nitrogen supply in various growth stages of maize (Zea mays L.). Furrow fertigation experiment was conducted in 120 (W1), 100 (W2), 80 (W3), and 60% (W4) levels of required water (560 mm) and 100 (N1), 80 (N2), 60 (N3), and 0% (N4) levels of required nitrogen fertilizer (184 kg N ha−1). N-fertilizer was applied in four split applications (before planting, at the seven-leaf, shooting, and flowering). In the farmers’ conventional fertilization (FCF) method, 120% level of required water and 100% level of the required N-fertilizer were used in two split applications (before planting and at the seven-leaf stage). Results showed that the highest maize aboveground nitrogen content was 3.11% for FCF treatments at the seven-leaf stage. The maximum nitrogen content in the sensitive flowering stage and the maximum grain yield were also observed in W2N1 treatment with 2.27% and 12.93 ton ha−1, respectively. While, there were no significant differences in aboveground nitrogen content and grain yield between W2N1 and W3N1, W2N2, and W3N2. The highest amounts of nitrate leaching out of the 80-cm soil layer and nitrate runoff losses, were also recorded in FCF treatment, followed by W1N1, W2N1, and W3N1. Based on plant nitrogen content, nitrate losses and maize yield, 80% levels of the required N-fertilizer and required irrigation water could be recommended as the optimal levels to reduce nitrate losses and improve maize yield.
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Li L, Li Q, Davis KE, Patterson C, Oo S, Liu W, Liu J, Wang G, Fontana JE, Thornburg TE, Pratt IS, Li F, Zhang Z, Zhou Y, Pan X, Zhang B. Response of Root Growth and Development to Nitrogen and Potassium Deficiency as well as microRNA-Mediated Mechanism in Peanut ( Arachis hypogaea L.). FRONTIERS IN PLANT SCIENCE 2021; 12:695234. [PMID: 34178008 PMCID: PMC8231928 DOI: 10.3389/fpls.2021.695234] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/14/2021] [Accepted: 05/17/2021] [Indexed: 05/13/2023]
Abstract
The mechanism of miRNA-mediated root growth and development in response to nutrient deficiency in peanut (Arachis hypogaea L.) is still unclear. In the present study, we found that both nitrogen (N) and potassium (K) deficiency resulted in a significant reduction in plant growth, as indicated by the significantly decreased dry weight of both shoot and root tissues under N or K deficiency. Both N and K deficiency significantly reduced the root length, root surface area, root volume, root vitality, and weakened root respiration, as indicated by the reduced O2 consuming rate. N deficiency significantly decreased primary root length and lateral root number, which might be associated with the upregulation of miR160, miR167, miR393, and miR396, and the downregulation of AFB3 and GRF. The primary and lateral root responses to K deficiency were opposite to that of the N deficiency condition. The upregulated miR156, miR390, NAC4, ARF2, and AFB3, and the downregulated miR160, miR164, miR393, and SPL10 may have contributed to the growth of primary roots and lateral roots under K deficiency. Overall, roots responded differently to the N or K deficiency stresses in peanuts, potentially due to the miRNA-mediated pathway and mechanism.
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Affiliation(s)
- Lijie Li
- Henan Collaborative Innovation Center of Modern Biological Breeding, Henan Institute of Science and Technology, Xinxiang, China
| | - Qian Li
- Henan Collaborative Innovation Center of Modern Biological Breeding, Henan Institute of Science and Technology, Xinxiang, China
| | - Kyle E. Davis
- Department of Biology, East Carolina University, Greenville, NC, United States
| | - Caitlin Patterson
- Department of Biology, East Carolina University, Greenville, NC, United States
- Elizabeth City State University, Elizabeth City, NC, United States
| | - Sando Oo
- Department of Biology, East Carolina University, Greenville, NC, United States
- Elizabeth City State University, Elizabeth City, NC, United States
| | - Wanying Liu
- College of Life Sciences, Anhui Normal University, Wuhu, China
| | - Jia Liu
- Henan Collaborative Innovation Center of Modern Biological Breeding, Henan Institute of Science and Technology, Xinxiang, China
| | - Guo Wang
- Henan Collaborative Innovation Center of Modern Biological Breeding, Henan Institute of Science and Technology, Xinxiang, China
| | - Julia Elise Fontana
- Department of Biology, East Carolina University, Greenville, NC, United States
| | | | - Isaac Seth Pratt
- Department of Biology, East Carolina University, Greenville, NC, United States
| | - Fei Li
- Peanut Research Institute, Luohe Academy of Agricultural Sciences, Luohe, China
| | - Zhiyong Zhang
- Henan Collaborative Innovation Center of Modern Biological Breeding, Henan Institute of Science and Technology, Xinxiang, China
- Yanzhong Zhou,
| | - Yanzhong Zhou
- Peanut Research Institute, Luohe Academy of Agricultural Sciences, Luohe, China
- Yanzhong Zhou,
| | - Xiaoping Pan
- Department of Biology, East Carolina University, Greenville, NC, United States
| | - Baohong Zhang
- Department of Biology, East Carolina University, Greenville, NC, United States
- Baohong Zhang,
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Ben Mariem S, González-Torralba J, Collar C, Aranjuelo I, Morales F. Durum Wheat Grain Yield and Quality under Low and High Nitrogen Conditions: Insights into Natural Variation in Low- and High-Yielding Genotypes. PLANTS (BASEL, SWITZERLAND) 2020; 9:E1636. [PMID: 33255440 PMCID: PMC7760076 DOI: 10.3390/plants9121636] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/06/2020] [Revised: 11/20/2020] [Accepted: 11/23/2020] [Indexed: 12/02/2022]
Abstract
The availability and management of N are major determinants of crop productivity, but N excessive use has an associated agro-ecosystems environmental impact. The aim of this work was to investigate the influence of N fertilization on yield and grain quality of 6 durum wheat genotypes, selected from 20 genotypes as high- and low-yielding genotypes. Two N levels were applied from anthesis to maturity: high (½ Hoagland nutrient solution) and low (modified ½ Hoagland with one-third of N). Together with the agronomic characterization, grain quality analyses were assessed to characterize carbohydrates concentration, mineral composition, glutenin and gliadin concentrations, polyphenol profile, and anti-radical activity. Nitrogen supply improved wheat grain yield with no effect on thousand-grain weight. Grain soluble sugars and gluten fractions were increased, but starch concentration was reduced, under high N. Mineral composition and polyphenol concentrations were also improved by N application. High-yielding genotypes had higher grain carbohydrates concentrations, while higher concentrations in grain minerals, gluten fractions, and polyphenols were recorded in the low-yielding ones. Decreasing the amount of N to one-third ensured a better N use efficiency but reduced durum wheat agronomic and quality traits.
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Affiliation(s)
- Sinda Ben Mariem
- Instituto de Agrobiotecnología (IdAB), CSIC-Gobierno de Navarra, Avda. de Pamplona 123, 31192 Mutilva, Spain; (S.B.M.); (J.G.-T.); (I.A.)
| | - Jon González-Torralba
- Instituto de Agrobiotecnología (IdAB), CSIC-Gobierno de Navarra, Avda. de Pamplona 123, 31192 Mutilva, Spain; (S.B.M.); (J.G.-T.); (I.A.)
| | - Concha Collar
- Cereals and Cereal-Based Products, Food Science Department, Instituto de Agroquímica y Tecnología de Alimentos (CSIC), Avda. Catedrático Agustín Escardino, 7, 46980 Paterna, Spain;
| | - Iker Aranjuelo
- Instituto de Agrobiotecnología (IdAB), CSIC-Gobierno de Navarra, Avda. de Pamplona 123, 31192 Mutilva, Spain; (S.B.M.); (J.G.-T.); (I.A.)
| | - Fermín Morales
- Instituto de Agrobiotecnología (IdAB), CSIC-Gobierno de Navarra, Avda. de Pamplona 123, 31192 Mutilva, Spain; (S.B.M.); (J.G.-T.); (I.A.)
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Abstract
Food security is a longstanding global issue over the last few centuries. Eradicating hunger and all forms of malnutrition by 2030 is still a key challenge. The COVID-19 pandemic has placed additional stress on food production, demand, and supply chain systems; majorly impacting cereal crop producer and importer countries. Short food supply chain based on the production from local farms is less susceptible to travel and export bans and works as a smooth system in the face of these stresses. Local drone-based data solutions can provide an opportunity to address these challenges. This review aims to present a deeper understanding of how the drone-based data solutions can help to combat food insecurity caused due to the pandemic, zoonotic diseases, and other food shocks by enhancing cereal crop productivity of small-scale farming systems in low-income countries. More specifically, the review covers sensing capabilities, promising algorithms, and methods, and added-value of novel machine learning algorithms for local-scale monitoring, biomass and yield estimation, and mapping of them. Finally, we present the opportunities for linking information from citizen science, internet of things (IoT) based on low-cost sensors and drone-based information to satellite data for upscaling crop yield estimation to a larger geographical extent within the Earth Observation umbrella.
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Abstract
Proximal optical sensors (POSs) are effective devices for monitoring the development of crops and the nitrogen (N) status of plants. POSs are both useful and necessary in facilitating the reduction of N losses into the environment and in attaining higher nitrogen use efficiency (NUE). To date, no comparison of these instruments has been made on quinoa. A field experiment conducted in Tuscany, Italy, with different POSs, has assessed the development of quinoa with respect to N status. Three sets of POSs were used (SPAD-502, GreenSeeker, and Canopeo App.) to monitor quinoa development and growth under different types of fertilizers (digestate and urea) and levels of N fertilization (100, 50, and 0 kg N ha−1). The present findings showed that in-season predictions of crop biomass at harvest by SPAD-502 and GreenSeeker optical sensors were successful in terms of the coefficient of determination (R2 = 0.68 and 0.82, respectively) and statistical significance (p < 0.05), while the Canopeo App. was suitable for monitoring the plant´s canopy expansion and senescence. The relative error (RE%) showed a remarkably high performance between observed and predicted values, 5.80% and 4.12% for GreenSeeker and SPAD-502, respectively. Overall, the POSs were effective devices for monitoring quinoa development during the growing season and for predicting dry biomass at harvest. However, abiotic stresses (e.g., heat-stress conditions at flowering) were shown to reduce POSs’ accuracy when estimating seed yields at harvest, and this problem will likely be overcome by advancing the sowing date.
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Tirado SB, Hirsch CN, Springer NM. UAV-based imaging platform for monitoring maize growth throughout development. PLANT DIRECT 2020; 4:e00230. [PMID: 32524060 PMCID: PMC7278367 DOI: 10.1002/pld3.230] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/10/2019] [Revised: 05/11/2020] [Accepted: 05/12/2020] [Indexed: 05/06/2023]
Abstract
Plant height (PH) data collected at high temporal resolutions can give insight into how genotype and environmental variation influence plant growth. However, in order to increase the temporal resolution of PH data collection, more robust, rapid, and low-cost methods are needed to evaluate field plots than those currently available. Due to their low cost and high functionality, unmanned aerial vehicles (UAVs) provide an efficient means for collecting height at various stages throughout development. We have developed a procedure for utilizing structure from motion algorithms to collect PH from RGB drone imagery and have used this platform to characterize a yield trial consisting of 24 maize hybrids planted in replicate under two dates and three planting densities. PH data was collected using both weekly UAV flights and manual measurements. The comparisons of UAV-based and manually acquired PH measurements revealed sources of error in measuring PH and were used to develop a robust pipeline for generating UAV-based PH estimates. This pipeline was utilized to document differences in the rate of growth between genotypes and planting dates. Our results also demonstrate that growth rates generated by PH measurements collected at multiple timepoints early in development can be useful in improving predictions of PH at the end of the season. This method provides a low cost, high throughput method for evaluating plant growth in response to environmental stimuli on a plot basis that can be implemented at the scale of a breeding program.
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Affiliation(s)
- Sara B. Tirado
- Department of Agronomy and Plant GeneticsUniversity of MinnesotaSaint PaulMNUSA
- Department of Plant and Microbial BiologyUniversity of MinnesotaSaint PaulMNUSA
| | - Candice N. Hirsch
- Department of Agronomy and Plant GeneticsUniversity of MinnesotaSaint PaulMNUSA
| | - Nathan M. Springer
- Department of Plant and Microbial BiologyUniversity of MinnesotaSaint PaulMNUSA
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