1
|
Siracusano G, La Corte A, Nucera AG, Gaeta M, Chiappini M, Finocchio G. Effective processing pipeline PACE 2.0 for enhancing chest x-ray contrast and diagnostic interpretability. Sci Rep 2023; 13:22471. [PMID: 38110512 PMCID: PMC10728198 DOI: 10.1038/s41598-023-49534-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2023] [Accepted: 12/09/2023] [Indexed: 12/20/2023] Open
Abstract
Preprocessing is an essential task for the correct analysis of digital medical images. In particular, X-ray imaging might contain artifacts, low contrast, diffractions or intensity inhomogeneities. Recently, we have developed a procedure named PACE that is able to improve chest X-ray (CXR) images including the enforcement of clinical evaluation of pneumonia originated by COVID-19. At the clinical benchmark state of this tool, there have been found some peculiar conditions causing a reduction of details over large bright regions (as in ground-glass opacities and in pleural effusions in bedridden patients) and resulting in oversaturated areas. Here, we have significantly improved the overall performance of the original approach including the results in those specific cases by developing PACE2.0. It combines 2D image decomposition, non-local means denoising, gamma correction, and recursive algorithms to improve image quality. The tool has been evaluated using three metrics: contrast improvement index, information entropy, and effective measure of enhancement, resulting in an average increase of 35% in CII, 7.5% in ENT, 95.6% in EME and 13% in BRISQUE against original radiographies. Additionally, the enhanced images were fed to a pre-trained DenseNet-121 model for transfer learning, resulting in an increase in classification accuracy from 80 to 94% and recall from 89 to 97%, respectively. These improvements led to a potential enhancement of the interpretability of lesion detection in CXRs. PACE2.0 has the potential to become a valuable tool for clinical decision support and could help healthcare professionals detect pneumonia more accurately.
Collapse
Affiliation(s)
- Giulio Siracusano
- Department of Electric, Electronic and Computer Engineering, University of Catania, Viale Andrea Doria 6, 95125, Catania, Italy.
| | - Aurelio La Corte
- Department of Electric, Electronic and Computer Engineering, University of Catania, Viale Andrea Doria 6, 95125, Catania, Italy
| | - Annamaria Giuseppina Nucera
- Unit of Radiology, Department of Advanced Diagnostic-Therapeutic Technologies, "Bianchi-Melacrino-Morelli" Hospital, Reggio Calabria, Via Giuseppe Melacrino, 21, 89124, Reggio Calabria, Italy
| | - Michele Gaeta
- Department of Biomedical Sciences, Dental and of Morphological and Functional Images, University of Messina, Via Consolare Valeria 1, 98125, Messina, Italy
| | - Massimo Chiappini
- Istituto Nazionale di Geofisica e Vulcanologia (INGV), Via di Vigna Murata 605, 00143, Rome, Italy.
- Maris Scarl, Via Vigna Murata 606, 00143, Rome, Italy.
| | - Giovanni Finocchio
- Istituto Nazionale di Geofisica e Vulcanologia (INGV), Via di Vigna Murata 605, 00143, Rome, Italy.
- Department of Mathematical and Computer Sciences, Physical Sciences and Earth Sciences, University of Messina, V.le F. Stagno D'Alcontres 31, 98166, Messina, Italy.
| |
Collapse
|
2
|
Shibu George G, Raj Mishra P, Sinha P, Ranjan Prusty M. COVID-19 Detection on Chest X-Ray Images Using Homomorphic Transformation and VGG Inspired Deep Convolutional Neural Network. Biocybern Biomed Eng 2022; 43:1-16. [PMID: 36447948 PMCID: PMC9684127 DOI: 10.1016/j.bbe.2022.11.003] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2022] [Revised: 11/01/2022] [Accepted: 11/18/2022] [Indexed: 11/25/2022]
Abstract
COVID-19 had caused the whole world to come to a standstill. The current detection methods are time consuming as well as costly. Using Chest X-rays (CXRs) is a solution to this problem, however, manual examination of CXRs is a cumbersome and difficult process needing specialization in the domain. Most of existing methods used for this application involve the usage of pretrained models such as VGG19, ResNet, DenseNet, Xception, and EfficeintNet which were trained on RGB image datasets. X-rays are fundamentally single channel images, hence using RGB trained model is not appropriate since it increases the operations by involving three channels instead of one. A way of using pretrained model for grayscale images is by replicating the one channel image data to three channel which introduces redundancy and another way is by altering the input layer of pretrained model to take in one channel image data, which comprises the weights in the forward layers that were trained on three channel images which weakens the use of pre-trained weights in a transfer learning approach. A novel approach for identification of COVID-19 using CXRs, Contrast Limited Adaptive Histogram Equalization (CLAHE) along with Homomorphic Transformation Filter which is used to process the pixel data in images and extract features from the CXRs is suggested in this paper. These processed images are then provided as input to a VGG inspired deep Convolutional Neural Network (CNN) model which takes one channel image data as input (grayscale images) to categorize CXRs into three class labels, namely, No-Findings, COVID-19, and Pneumonia. Evaluation of the suggested model is done with the help of two publicly available datasets; one to obtain COVID-19 and No-Finding images and the other to obtain Pneumonia CXRs. The dataset comprises 6750 images in total; 2250 images for each class. Results obtained show that the model has achieved 96.56% for multi-class classification and 98.06% accuracy for binary classification using 5-fold stratified cross validation (CV) method. This result is competitive and up to the mark when compared with the performance shown by existing approaches for COVID-19 classification.
Collapse
Affiliation(s)
- Gerosh Shibu George
- School of Computer Science and Engineering, Vellore Institute of Technology, Chennai, Tamil Nadu 600127, India
| | - Pratyush Raj Mishra
- School of Computer Science and Engineering, Vellore Institute of Technology, Chennai, Tamil Nadu 600127, India
| | - Panav Sinha
- School of Computer Science and Engineering, Vellore Institute of Technology, Chennai, Tamil Nadu 600127, India
| | - Manas Ranjan Prusty
- Centre for Cyber Physical Systems, School of Computer Science and Engineering, Vellore Institute of Technology, Chennai, Tamil Nadu 600127, India
| |
Collapse
|
3
|
Mirza MW, Siddiq A, Khan IR. A comparative study of medical image enhancement algorithms and quality assessment metrics on COVID-19 CT images. SIGNAL, IMAGE AND VIDEO PROCESSING 2022; 17:915-924. [PMID: 35493403 PMCID: PMC9037579 DOI: 10.1007/s11760-022-02214-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/02/2021] [Revised: 12/10/2021] [Accepted: 03/20/2022] [Indexed: 06/14/2023]
Abstract
Medical imaging can help doctors in better diagnosis of several conditions. During the present COVID-19 pandemic, timely detection of novel coronavirus is crucial, which can help in curing the disease at an early stage. Image enhancement techniques can improve the visual appearance of COVID-19 CT scans and speed-up the process of diagnosis. In this study, we analyze some state-of-the-art image enhancement techniques for their suitability in enhancing the CT scans of COVID-19 patients. Six quantitative metrics, Entropy, SSIM, AMBE, PSNR, EME, and EMEE, are used to evaluate the enhanced images. Two experienced radiologists were involved in the study to evaluate the performance of the enhancement techniques and the quantitative metrics used to assess them.
Collapse
Affiliation(s)
- Muhammad Waqar Mirza
- Electrical Engineering Department, Pakistan Institute of Engineering and Technology, Multan, Pakistan
| | - Asif Siddiq
- Electrical Engineering Department, Pakistan Institute of Engineering and Technology, Multan, Pakistan
| | - Ishtiaq Rasool Khan
- College of Computer Science and Engineering, University of Jeddah, Jeddah, Saudi Arabia
| |
Collapse
|
4
|
A Histogram-Based Low-Complexity Approach for the Effective Detection of COVID-19 Disease from CT and X-ray Images. APPLIED SCIENCES-BASEL 2021. [DOI: 10.3390/app11198867] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
The global COVID-19 pandemic certainly has posed one of the more difficult challenges for researchers in the current century. The development of an automatic diagnostic tool, able to detect the disease in its early stage, could undoubtedly offer a great advantage to the battle against the pandemic. In this regard, most of the research efforts have been focused on the application of Deep Learning (DL) techniques to chest images, including traditional chest X-rays (CXRs) and Computed Tomography (CT) scans. Although these approaches have demonstrated their effectiveness in detecting the COVID-19 disease, they are of huge computational complexity and require large datasets for training. In addition, there may not exist a large amount of COVID-19 CXRs and CT scans available to researchers. To this end, in this paper, we propose an approach based on the evaluation of the histogram from a common class of images that is considered as the target. A suitable inter-histogram distance measures how this target histogram is far from the histogram evaluated on a test image: if this distance is greater than a threshold, the test image is labeled as anomaly, i.e., the scan belongs to a patient affected by COVID-19 disease. Extensive experimental results and comparisons with some benchmark state-of-the-art methods support the effectiveness of the developed approach, as well as demonstrate that, at least when the images of the considered datasets are homogeneous enough (i.e., a few outliers are present), it is not really needed to resort to complex-to-implement DL techniques, in order to attain an effective detection of the COVID-19 disease. Despite the simplicity of the proposed approach, all the considered metrics (i.e., accuracy, precision, recall, and F-measure) attain a value of 1.0 under the selected datasets, a result comparable to the corresponding state-of-the-art DNN approaches, but with a remarkable computational simplicity.
Collapse
|