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For: Tan S, Dvorak CMT, Murtaugh MP. Rapid, Unbiased PRRSV Strain Detection Using MinION Direct RNA Sequencing and Bioinformatics Tools. Viruses 2019;11:E1132. [PMID: 31817886 DOI: 10.3390/v11121132] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2019] [Revised: 12/04/2019] [Accepted: 12/05/2019] [Indexed: 12/15/2022]  Open
Number Cited by Other Article(s)
1
Pecman A, Mehle N, Kutnjak D. Detection of Plant Viruses Using Nanopore Sequencing Based Metagenomic Approach. Methods Mol Biol 2024;2732:251-264. [PMID: 38060130 DOI: 10.1007/978-1-0716-3515-5_17] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/08/2023]
2
Jakab S, Bali K, Freytag C, Pataki A, Fehér E, Halas M, Jerzsele Á, Szabó I, Szarka K, Bálint Á, Bányai K. Deep Sequencing of Porcine Reproductive and Respiratory Syndrome Virus ORF7: A Promising Tool for Diagnostics and Epidemiologic Surveillance. Animals (Basel) 2023;13:3223. [PMID: 37893946 PMCID: PMC10603690 DOI: 10.3390/ani13203223] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2023] [Revised: 10/02/2023] [Accepted: 10/05/2023] [Indexed: 10/29/2023]  Open
3
Romeo C, Parisio G, Scali F, Tonni M, Santucci G, Maisano AM, Barbieri I, Boniotti MB, Stadejek T, Alborali GL. Complex interplay between PRRSV-1 genetic diversity, coinfections and antimicrobial use influences performance parameters in post-weaning pigs. Vet Microbiol 2023;284:109830. [PMID: 37481996 DOI: 10.1016/j.vetmic.2023.109830] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2023] [Revised: 07/06/2023] [Accepted: 07/11/2023] [Indexed: 07/25/2023]
4
Pan J, Zeng M, Zhao M, Huang L. Research Progress on the detection methods of porcine reproductive and respiratory syndrome virus. Front Microbiol 2023;14:1097905. [PMID: 36970703 PMCID: PMC10033578 DOI: 10.3389/fmicb.2023.1097905] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2022] [Accepted: 02/17/2023] [Indexed: 03/11/2023]  Open
5
Vereecke N, Woźniak A, Pauwels M, Coppens S, Nauwynck H, Cybulski P, Theuns S, Stadejek T. Successful Whole Genome Nanopore Sequencing of Swine Influenza A Virus (swIAV) Directly from Oral Fluids Collected in Polish Pig Herds. Viruses 2023;15:v15020435. [PMID: 36851649 PMCID: PMC9962634 DOI: 10.3390/v15020435] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2022] [Revised: 01/20/2023] [Accepted: 01/31/2023] [Indexed: 02/09/2023]  Open
6
Hamim I, Sekine KT, Komatsu K. How do emerging long-read sequencing technologies function in transforming the plant pathology research landscape? PLANT MOLECULAR BIOLOGY 2022;110:469-484. [PMID: 35962900 DOI: 10.1007/s11103-022-01305-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/03/2022] [Accepted: 07/26/2022] [Indexed: 06/15/2023]
7
Holicki CM, Bergmann F, Stoek F, Schulz A, Groschup MH, Ziegler U, Sadeghi B. Expedited retrieval of high-quality Usutu virus genomes via Nanopore sequencing with and without target enrichment. Front Microbiol 2022;13:1044316. [PMID: 36439823 PMCID: PMC9681921 DOI: 10.3389/fmicb.2022.1044316] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2022] [Accepted: 10/20/2022] [Indexed: 10/04/2023]  Open
8
Chen L, Gao X, Xue W, Yuan S, Liu M, Sun Z. Rapid metagenomic identification of two major swine pathogens with real-time nanopore sequencing. J Virol Methods 2022;306:114545. [PMID: 35595155 DOI: 10.1016/j.jviromet.2022.114545] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2022] [Revised: 05/10/2022] [Accepted: 05/12/2022] [Indexed: 10/18/2022]
9
Whole-genome sequencing and genetic characteristics of representative porcine reproductive and respiratory syndrome virus (PRRSV) isolates in Korea. Virol J 2022;19:66. [PMID: 35410421 PMCID: PMC8996673 DOI: 10.1186/s12985-022-01790-6] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2021] [Accepted: 03/23/2022] [Indexed: 12/04/2022]  Open
10
Anderson TK, Inderski B, Diel DG, Hause BM, Porter EG, Clement T, Nelson EA, Bai J, Christopher-Hennings J, Gauger PC, Zhang J, Harmon KM, Main R, Lager KM, Faaberg KS. The United States Swine Pathogen Database: integrating veterinary diagnostic laboratory sequence data to monitor emerging pathogens of swine. Database (Oxford) 2021;2021:6462938. [PMID: 35165687 PMCID: PMC8903347 DOI: 10.1093/database/baab078] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2021] [Revised: 11/04/2021] [Accepted: 11/29/2021] [Indexed: 11/12/2022]
11
WGS- versus ORF5-Based Typing of PRRSV: A Belgian Case Study. Viruses 2021;13:v13122419. [PMID: 34960688 PMCID: PMC8707199 DOI: 10.3390/v13122419] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2021] [Revised: 11/17/2021] [Accepted: 11/24/2021] [Indexed: 12/18/2022]  Open
12
Javaran VJ, Moffett P, Lemoyne P, Xu D, Adkar-Purushothama CR, Fall ML. Grapevine Virology in the Third-Generation Sequencing Era: From Virus Detection to Viral Epitranscriptomics. PLANTS (BASEL, SWITZERLAND) 2021;10:plants10112355. [PMID: 34834718 PMCID: PMC8623739 DOI: 10.3390/plants10112355] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/16/2021] [Revised: 10/16/2021] [Accepted: 10/29/2021] [Indexed: 05/30/2023]
13
Duan E, Zhang B, Liang X, Jing H, Liu C, Zhang F, Huang J, Su L, Wang J. Effects of glycyrrhizin on the growth cycle and ATPase activity of PRRSV-2-infected MARC-145 cells. Res Vet Sci 2021;138:30-38. [PMID: 34091227 DOI: 10.1016/j.rvsc.2021.05.011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2021] [Revised: 05/10/2021] [Accepted: 05/18/2021] [Indexed: 11/29/2022]
14
Mizutani Y, Uesaka K, Ota A, Calassanzio M, Ratti C, Suzuki T, Fujimori F, Chiba S. De novo Sequencing of Novel Mycoviruses From Fusarium sambucinum: An Attempt on Direct RNA Sequencing of Viral dsRNAs. Front Microbiol 2021;12:641484. [PMID: 33927702 PMCID: PMC8076516 DOI: 10.3389/fmicb.2021.641484] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2020] [Accepted: 03/16/2021] [Indexed: 11/17/2022]  Open
15
Tan S, Dvorak CMT, Murtaugh MP. Characterization of Emerging Swine Viral Diseases through Oxford Nanopore Sequencing Using Senecavirus A as a Model. Viruses 2020;12:v12101136. [PMID: 33036361 PMCID: PMC7600144 DOI: 10.3390/v12101136] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2020] [Revised: 09/30/2020] [Accepted: 10/02/2020] [Indexed: 12/18/2022]  Open
16
Wang Y, Yim-Im W, Porter E, Lu N, Anderson J, Noll L, Fang Y, Zhang J, Bai J. Development of a bead-based assay for detection and differentiation of field strains and four vaccine strains of type 2 porcine reproductive and respiratory syndrome virus (PRRSV-2) in the USA. Transbound Emerg Dis 2020;68:1414-1423. [PMID: 32816334 DOI: 10.1111/tbed.13808] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2020] [Revised: 08/14/2020] [Accepted: 08/17/2020] [Indexed: 12/14/2022]
17
Gagnon CA, Lalonde C, Provost C. Porcine reproductive and respiratory syndrome virus whole-genome sequencing efficacy with field clinical samples using a poly(A)-tail viral genome purification method. J Vet Diagn Invest 2020;33:216-226. [PMID: 32856560 DOI: 10.1177/1040638720952411] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]  Open
18
Quick assessment of influenza a virus infectivity with a long-range reverse-transcription quantitative polymerase chain reaction assay. BMC Infect Dis 2020;20:585. [PMID: 32762666 PMCID: PMC7407439 DOI: 10.1186/s12879-020-05317-8] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2020] [Accepted: 07/30/2020] [Indexed: 12/31/2022]  Open
19
Grädel C, Terrazos Miani MA, Baumann C, Barbani MT, Neuenschwander S, Leib SL, Suter-Riniker F, Ramette A. Whole-Genome Sequencing of Human Enteroviruses from Clinical Samples by Nanopore Direct RNA Sequencing. Viruses 2020;12:v12080841. [PMID: 32752120 PMCID: PMC7472277 DOI: 10.3390/v12080841] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2020] [Revised: 07/28/2020] [Accepted: 07/29/2020] [Indexed: 12/14/2022]  Open
20
Determining the Suitability of MinION's Direct RNA and DNA Amplicon Sequencing for Viral Subtype Identification. Viruses 2020;12:v12080801. [PMID: 32722480 PMCID: PMC7472323 DOI: 10.3390/v12080801] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2020] [Revised: 07/22/2020] [Accepted: 07/23/2020] [Indexed: 12/21/2022]  Open
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