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Aires T, Cúcio C, Brakel J, Weinberger F, Wahl M, Teles A, Muyzer G, Engelen AH. Impact of persistently high sea surface temperatures on the rhizobiomes of Zostera marina in a Baltic Sea benthocosms. GLOBAL CHANGE BIOLOGY 2024; 30:e17337. [PMID: 38771026 DOI: 10.1111/gcb.17337] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2023] [Revised: 04/18/2024] [Accepted: 04/28/2024] [Indexed: 05/22/2024]
Abstract
Persistently high marine temperatures are escalating and threating marine biodiversity. The Baltic Sea, warming faster than other seas, is a good model to study the impact of increasing sea surface temperatures. Zostera marina, a key player in the Baltic ecosystem, faces susceptibility to disturbances, especially under chronic high temperatures. Despite the increasing number of studies on the impact of global warming on seagrasses, little attention has been paid to the role of the holobiont. Using an outdoor benthocosm to replicate near-natural conditions, this study explores the repercussions of persistent warming on the microbiome of Z. marina and its implications for holobiont function. Results show that both seasonal warming and chronic warming, impact Z. marina roots and sediment microbiome. Compared with roots, sediments demonstrate higher diversity and stability throughout the study, but temperature effects manifest earlier in both compartments, possibly linked to premature Z. marina die-offs under chronic warming. Shifts in microbial composition, such as an increase in organic matter-degrading and sulfur-related bacteria, accompany chronic warming. A higher ratio of sulfate-reducing bacteria compared to sulfide oxidizers was found in the warming treatment which may result in the collapse of the seagrasses, due to toxic levels of sulfide. Differentiating predicted pathways for warmest temperatures were related to sulfur and nitrogen cycles, suggest an increase of the microbial metabolism, and possible seagrass protection strategies through the production of isoprene. These structural and compositional variations in the associated microbiome offer early insights into the ecological status of seagrasses. Certain taxa/genes/pathways may serve as markers for specific stresses. Monitoring programs should integrate this aspect to identify early indicators of seagrass health. Understanding microbiome changes under stress is crucial for the use of potential probiotic taxa to mitigate climate change effects. Broader-scale examination of seagrass-microorganism interactions is needed to leverage knowledge on host-microbe interactions in seagrasses.
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Affiliation(s)
- Tânia Aires
- Centro de Ciências Do Mar (CCMAR), Centro de Investigação Marinha e Ambiental (CIMAR), Universidade Do Algarve, Faro, Portugal
| | - Catarina Cúcio
- Microbial Systems Ecology, Department of Freshwater and Marine Ecology, Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, The Netherlands
| | - Janina Brakel
- GEOMAR Helmholtz Centre for Ocean Research, Kiel, Germany
| | | | - Martin Wahl
- GEOMAR Helmholtz Centre for Ocean Research, Kiel, Germany
| | - Ana Teles
- Max Planck Institute for Evolutionary Biology, Ploen, Germany
| | - Gerard Muyzer
- Microbial Systems Ecology, Department of Freshwater and Marine Ecology, Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, The Netherlands
| | - Aschwin H Engelen
- Centro de Ciências Do Mar (CCMAR), Centro de Investigação Marinha e Ambiental (CIMAR), Universidade Do Algarve, Faro, Portugal
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Siemering GS, Arriaga FJ, Cagle GA, Van Beek JM, Freedman ZB. Impacts of vegetable processing and cheese making effluent on soil microbial functional diversity, community structure, and denitrification potential of land treatment systems. WATER ENVIRONMENT RESEARCH : A RESEARCH PUBLICATION OF THE WATER ENVIRONMENT FEDERATION 2024; 96:e11036. [PMID: 38740567 DOI: 10.1002/wer.11036] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/02/2024] [Revised: 04/16/2024] [Accepted: 04/20/2024] [Indexed: 05/16/2024]
Abstract
The cheese making and vegetable processing industries generate immense volumes of high-nitrogen wastewater that is often treated at rural facilities using land applications. Laboratory incubation results showed denitrification decreased with temperature in industry facility soils but remained high in soils from agricultural sites (75% at 2.1°C). 16S rRNA, phospholipid fatty acid (PLFA), and soil respiration analyses were conducted to investigate potential soil microbiome impacts. Biotic and abiotic system factor correlations showed no clear patterns explaining the divergent denitrification rates. In all three soil types at the phylum level, Actinobacteria, Proteobacteria, and Acidobacteria dominated, whereas at the class level, Nitrososphaeria and Alphaproteobacteria dominated, similar to denitrifying systems such as wetlands, wastewater resource recovery facilities, and wastewater-irrigated agricultural systems. Results show that potential denitrification drivers vary but lay the foundation to develop a better understanding of the key factors regulating denitrification in land application systems and protect local groundwater supplies. PRACTITIONER POINTS: Incubation study denitrification rates decreased as temperatures decreased, potentially leading to groundwater contamination issues during colder months. The three most dominant phyla for all systems are Actinobacteria, Proteobacteria, and Acidobacteria. The dominant class for all systems is Nitrosphaeria (phyla Crenarchaeota). No correlation patterns between denitrification rates and system biotic and abiotic factors were observed that explained system efficiency differences.
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Affiliation(s)
- Geoffrey S Siemering
- Department of Soil Science, University of Wisconsin-Madison, Madison, Wisconsin, USA
| | - Francisco J Arriaga
- Department of Soil Science, University of Wisconsin-Madison, Madison, Wisconsin, USA
| | - Grace A Cagle
- Department of Soil Science, University of Wisconsin-Madison, Madison, Wisconsin, USA
| | - Joelie M Van Beek
- Department of Soil Science, University of Wisconsin-Madison, Madison, Wisconsin, USA
| | - Zachary B Freedman
- Department of Soil Science, University of Wisconsin-Madison, Madison, Wisconsin, USA
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Li D, Sun Z, Luo G, Lu L, Zhang S, Xi J. Enhancing biological conversion of NO to N 2O by utilizing thermophiles instead of mesophiles. CHEMOSPHERE 2024; 350:141037. [PMID: 38147927 DOI: 10.1016/j.chemosphere.2023.141037] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/23/2023] [Revised: 11/24/2023] [Accepted: 12/23/2023] [Indexed: 12/28/2023]
Abstract
The production of nitrous oxide (N2O) through the biological denitrification of nitric oxide (NO) from flue gases has recently been achieved. Although the temperature of flue gas after desulphurization is usually 45-70 °C, all previous studies conducted microbial denitrification of NO under mesophilic conditions (22-35 °C). This study investigated the biological conversion of NO to N2O in both mesophilic (35-45 °C) and thermophilic conditions (45-50 °C). The results showed that temperature has a great impact on N2O production, with a maximum conversion efficiency (from NO to N2O) of 82% achieved at 45 °C, which is obviously higher than the reported conversion efficiencies (24-71%) under mesophilic conditions. Additionally, high-throughput sequencing result showed that the genera Enterococcus, Clostridium, Romboutsia, and Streptococcus were closely related to NO denitrification and N2O production. Microbial communities at 40 and 45 °C had greater metabolizing capacities for polymeric carbon sources. This study suggests that thermophilic condition (45 °C) is more suitable for biological production of N2O from NO.
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Affiliation(s)
- Dan Li
- Environmental Simulation and Pollution Control State Key Joint Laboratory, School of Environment, Tsinghua University, Beijing, 100084, China
| | - Zhuqiu Sun
- School of Environmental Science and Engineering, Yancheng Institute of Technology, Yancheng 224051, China
| | - Ga Luo
- Environmental Simulation and Pollution Control State Key Joint Laboratory, School of Environment, Tsinghua University, Beijing, 100084, China
| | - Lichao Lu
- School of Petrochemical Engineering and Environment, Zhejiang Ocean University, Zhoushan, 316004, China
| | - Shaobo Zhang
- Beijing Capital Sludge Disposal Technology Co. LTD, 100044, Beijing, China
| | - Jinying Xi
- Environmental Simulation and Pollution Control State Key Joint Laboratory, School of Environment, Tsinghua University, Beijing, 100084, China.
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Zhang B, Li ZL, Bai CH, Liu JL, Nan J, Cao D, Li LW. Characteristics of groundwater microbial communities' structure under the impact of elevated nitrate concentrations in north China plain. ENVIRONMENTAL RESEARCH 2023; 218:115003. [PMID: 36495969 DOI: 10.1016/j.envres.2022.115003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/28/2022] [Revised: 11/23/2022] [Accepted: 12/04/2022] [Indexed: 06/17/2023]
Abstract
In groundwater environments, the interaction between microbial communities and the hydrogeochemical parameters have been investigated extensively in the past years. However, little is known whether the maximum contamination level (MCL) is a threshold value that dictates the microbial composition. In this study, we analyzed 10 groundwater samples for their nitrate, nitrite, COD and sulfate concentrations, and characterized their microbial compositions using 16 S rRNA based high-throughput sequencing methods. All the 10 samples had oxygen demands higher than the corresponding MCL of China (10 mg L-1); moreover, 4 out of 10 samples also had nitrate concentrations higher than the corresponding MCL, which indicated that the groundwater quality was negatively impacted by anthropogenic activities. Comparing the microbial composition of groundwater that had higher-than-MCL nitrate concentrations to those that had lower-than-MCL nitrate concentrations, no significant differences were detected in communities' richness and diversity. However, the non-metric multi-dimensional analysis suggested that the 4 groundwater samples whose nitrate concentration exceed MCL are distinctly different from those of the rest 6 samples, indicating that MCL does have a significant impact on microbial structures. Pearson's correlation analysis suggested that none of the four analyzed hydrochemical parameters had significant impact on microbial communities' richness and diversity; however, at the genus level, the correlation results suggested that JG30-KM-CM45, Sphingomonas and Rhodococcus are closely correlated with nitrate concentration. The findings of this study deepened our understanding with respect to the relationships between the environmental quality indices and the microbial compositions of groundwater.
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Affiliation(s)
- Bo Zhang
- Key Lab of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, No. 18 Shuangqing Road, Haidian District, Beijing, 10086, China.
| | - Zhi-Ling Li
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin, 150090, China.
| | - Cai-Hua Bai
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin, 150090, China
| | - Jing-Lan Liu
- Tianjin Geological Research and Marine Geology Center, Tianjin, 300381, China
| | - Jun Nan
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin, 150090, China
| | - Di Cao
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin, 150090, China
| | - Li-Wei Li
- Tianjin Geological Research and Marine Geology Center, Tianjin, 300381, China.
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Reductive Cr(VI) Removal under Different Reducing and Electron Donor Conditions—A Soil Microcosm Study. WATER 2022. [DOI: 10.3390/w14142179] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
Increased groundwater and soil contamination by hexavalent chromium have led to the employment of a variety of detoxification methods. Biological remediation of Cr(VI) polluted aquifers is an eco-friendly method that can be performed in situ by stimulating the indigenous microbial population with organic and inorganic electron donors. In order to study the effect of different redox conditions on microbial remediated Cr(VI) reduction to Cr(III), microcosm experiments were conducted under anaerobic, anoxic, and sulfate-reducing conditions and at hexavalent chromium groundwater concentrations in the 0–3000 μg/L range, with groundwater and soil collected from an industrial area (Inofyta region). As electron donors, molasses, emulsified vegetable oil (EVO), and FeSO4 were employed. To quantitatively describe the degradation kinetics of Cr(VI), pseudo-first-order kinetics were adopted. The results indicate that an anaerobic system dosed with simple or complex external organic carbon sources can lead to practically complete Cr(VI) reduction to Cr(III), while the addition of Fe2+ can further increase Cr(VI) removal rate significantly. Furthermore, Cr(VI) microbial reduction is possible in the presence of NO3− at rates comparable to anaerobic Cr(VI) microbial reduction, while high sulfate concentrations have a negative effect on Cr(VI) bioreduction rates in comparison to lower sulfate concentrations.
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