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For: Morris LM, Duvall MR. The chloroplast genome of Anomochloa marantoidea (Anomochlooideae; Poaceae) comprises a mixture of grass-like and unique features. Am J Bot 2010;97:620-7. [PMID: 21622424 DOI: 10.3732/ajb.0900226] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Number Cited by Other Article(s)
1
Hu Y, Sun Y, Zhu QH, Fan L, Li J. Poaceae Chloroplast Genome Sequencing: Great Leap Forward in Recent Ten Years. Curr Genomics 2023;23:369-384. [PMID: 37920556 PMCID: PMC10173419 DOI: 10.2174/1389202924666221201140603] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2022] [Revised: 10/02/2022] [Accepted: 10/19/2022] [Indexed: 12/11/2022]  Open
2
Xu J, Liu C, Song Y, Li M. Comparative Analysis of the Chloroplast Genome for Four Pennisetum Species: Molecular Structure and Phylogenetic Relationships. Front Genet 2021;12:687844. [PMID: 34386040 PMCID: PMC8354216 DOI: 10.3389/fgene.2021.687844] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2021] [Accepted: 06/21/2021] [Indexed: 01/22/2023]  Open
3
Lee C, Ruhlman TA, Jansen RK. Unprecedented Intraindividual Structural Heteroplasmy in Eleocharis (Cyperaceae, Poales) Plastomes. Genome Biol Evol 2021;12:641-655. [PMID: 32282915 PMCID: PMC7426004 DOI: 10.1093/gbe/evaa076] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 04/07/2020] [Indexed: 12/13/2022]  Open
4
Ruifang Liang, Caraballo-Ortiz MA, Liu Y, Su X. Characterization of the Complete Chloroplast Genome of Meconopsis punicea (Papaveraceae), an Endemic Species from the Qinghai-Tibet Plateau in China. CYTOL GENET+ 2021. [DOI: 10.3103/s0095452721020092] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
5
Orton LM, Barberá P, Nissenbaum MP, Peterson PM, Quintanar A, Soreng RJ, Duvall MR. A 313 plastome phylogenomic analysis of Pooideae: Exploring relationships among the largest subfamily of grasses. Mol Phylogenet Evol 2021;159:107110. [PMID: 33609709 DOI: 10.1016/j.ympev.2021.107110] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2020] [Revised: 02/04/2021] [Accepted: 02/05/2021] [Indexed: 11/29/2022]
6
Implications of plastome evolution in the true lilies (monocot order Liliales). Mol Phylogenet Evol 2020;148:106818. [PMID: 32294543 DOI: 10.1016/j.ympev.2020.106818] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2019] [Revised: 03/30/2020] [Accepted: 04/01/2020] [Indexed: 01/30/2023]
7
Darshetkar AM, Datar MN, Tamhankar S, Li P, Choudhary RK. Understanding evolution in Poales: Insights from Eriocaulaceae plastome. PLoS One 2019;14:e0221423. [PMID: 31430346 PMCID: PMC6701780 DOI: 10.1371/journal.pone.0221423] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2019] [Accepted: 08/06/2019] [Indexed: 11/28/2022]  Open
8
Chiapella JO, Barfuss MHJ, Xue ZQ, Greimler J. The Plastid Genome of Deschampsia cespitosa (Poaceae). Molecules 2019;24:E216. [PMID: 30634385 PMCID: PMC6359331 DOI: 10.3390/molecules24020216] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2018] [Revised: 12/28/2018] [Accepted: 01/04/2019] [Indexed: 01/03/2023]  Open
9
Characterization of chloroplast genomes of Alnus rubra and Betula cordifolia, and their use in phylogenetic analyses in Betulaceae. Genes Genomics 2018;41:305-316. [PMID: 30456523 DOI: 10.1007/s13258-018-0762-5] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2018] [Accepted: 11/04/2018] [Indexed: 10/27/2022]
10
Sancho R, Cantalapiedra CP, López-Alvarez D, Gordon SP, Vogel JP, Catalán P, Contreras-Moreira B. Comparative plastome genomics and phylogenomics of Brachypodium: flowering time signatures, introgression and recombination in recently diverged ecotypes. THE NEW PHYTOLOGIST 2018;218:1631-1644. [PMID: 29206296 DOI: 10.1111/nph.14926] [Citation(s) in RCA: 57] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/10/2016] [Accepted: 03/03/2017] [Indexed: 05/24/2023]
11
Saarela JM, Burke SV, Wysocki WP, Barrett MD, Clark LG, Craine JM, Peterson PM, Soreng RJ, Vorontsova MS, Duvall MR. A 250 plastome phylogeny of the grass family (Poaceae): topological support under different data partitions. PeerJ 2018;6:e4299. [PMID: 29416954 PMCID: PMC5798404 DOI: 10.7717/peerj.4299] [Citation(s) in RCA: 76] [Impact Index Per Article: 12.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2017] [Accepted: 01/08/2018] [Indexed: 12/23/2022]  Open
12
Krawczyk K, Nobis M, Myszczyński K, Klichowska E, Sawicki J. Plastid super-barcodes as a tool for species discrimination in feather grasses (Poaceae: Stipa). Sci Rep 2018;8:1924. [PMID: 29386579 PMCID: PMC5792575 DOI: 10.1038/s41598-018-20399-w] [Citation(s) in RCA: 53] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2017] [Accepted: 01/17/2018] [Indexed: 02/03/2023]  Open
13
Teisher JK, McKain MR, Schaal BA, Kellogg EA. Polyphyly of Arundinoideae (Poaceae) and evolution of the twisted geniculate lemma awn. ANNALS OF BOTANY 2017;120. [PMID: 28645142 PMCID: PMC5714200 DOI: 10.1093/aob/mcx058] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
14
Wysocki WP, Burke SV, Swingley WD, Duvall MR. The First Complete Plastid Genome from Joinvilleaceae (J. ascendens; Poales) Shows Unique and Unpredicted Rearrangements. PLoS One 2016;11:e0163218. [PMID: 27658044 PMCID: PMC5033401 DOI: 10.1371/journal.pone.0163218] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2016] [Accepted: 09/06/2016] [Indexed: 11/19/2022]  Open
15
Zheng W, Chen J, Hao Z, Shi J. Comparative Analysis of the Chloroplast Genomic Information of Cunninghamia lanceolata (Lamb.) Hook with Sibling Species from the Genera Cryptomeria D. Don, Taiwania Hayata, and Calocedrus Kurz. Int J Mol Sci 2016;17:ijms17071084. [PMID: 27399686 PMCID: PMC4964460 DOI: 10.3390/ijms17071084] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2016] [Revised: 06/01/2016] [Accepted: 06/23/2016] [Indexed: 11/18/2022]  Open
16
Burke SV, Wysocki WP, Zuloaga FO, Craine JM, Pires JC, Edger PP, Mayfield-Jones D, Clark LG, Kelchner SA, Duvall MR. Evolutionary relationships in Panicoid grasses based on plastome phylogenomics (Panicoideae; Poaceae). BMC PLANT BIOLOGY 2016;16:140. [PMID: 27316745 PMCID: PMC4912804 DOI: 10.1186/s12870-016-0823-3] [Citation(s) in RCA: 41] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/20/2016] [Accepted: 05/27/2016] [Indexed: 05/08/2023]
17
Givnish TJ, Zuluaga A, Marques I, Lam VKY, Gomez MS, Iles WJD, Ames M, Spalink D, Moeller JR, Briggs BG, Lyon SP, Stevenson DW, Zomlefer W, Graham SW. Phylogenomics and historical biogeography of the monocot order Liliales: out of Australia and through Antarctica. Cladistics 2016;32:581-605. [DOI: 10.1111/cla.12153] [Citation(s) in RCA: 48] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 01/25/2016] [Indexed: 11/28/2022]  Open
18
Burke SV, Lin CS, Wysocki WP, Clark LG, Duvall MR. Phylogenomics and Plastome Evolution of Tropical Forest Grasses (Leptaspis, Streptochaeta: Poaceae). FRONTIERS IN PLANT SCIENCE 2016;7:1993. [PMID: 28083012 PMCID: PMC5186769 DOI: 10.3389/fpls.2016.01993] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/29/2016] [Accepted: 12/15/2016] [Indexed: 05/08/2023]
19
Dynamics of chloroplast genomes in green plants. Genomics 2015. [DOI: 10.1016/j.ygeno.2015.07.004] [Citation(s) in RCA: 60] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
20
Cotton JL, Wysocki WP, Clark LG, Kelchner SA, Pires JC, Edger PP, Mayfield-Jones D, Duvall MR. Resolving deep relationships of PACMAD grasses: a phylogenomic approach. BMC PLANT BIOLOGY 2015;15:178. [PMID: 26160195 PMCID: PMC4498559 DOI: 10.1186/s12870-015-0563-9] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/20/2015] [Accepted: 06/25/2015] [Indexed: 05/08/2023]
21
Saarela JM, Wysocki WP, Barrett CF, Soreng RJ, Davis JI, Clark LG, Kelchner SA, Pires JC, Edger PP, Mayfield DR, Duvall MR. Plastid phylogenomics of the cool-season grass subfamily: clarification of relationships among early-diverging tribes. AOB PLANTS 2015;7:plv046. [PMID: 25940204 PMCID: PMC4480051 DOI: 10.1093/aobpla/plv046] [Citation(s) in RCA: 47] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/08/2015] [Accepted: 04/21/2015] [Indexed: 05/08/2023]
22
Besnard G, Christin PA, Malé PJG, Coissac E, Ralimanana H, Vorontsova MS. Phylogenomics and taxonomy of Lecomtelleae (Poaceae), an isolated panicoid lineage from Madagascar. ANNALS OF BOTANY 2013;112:1057-66. [PMID: 23985988 PMCID: PMC3783238 DOI: 10.1093/aob/mct174] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/05/2013] [Accepted: 06/17/2013] [Indexed: 05/18/2023]
23
Martin G, Baurens FC, Cardi C, Aury JM, D’Hont A. The complete chloroplast genome of banana (Musa acuminata, Zingiberales): insight into plastid monocotyledon evolution. PLoS One 2013;8:e67350. [PMID: 23840670 PMCID: PMC3696114 DOI: 10.1371/journal.pone.0067350] [Citation(s) in RCA: 78] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2013] [Accepted: 05/16/2013] [Indexed: 01/15/2023]  Open
24
Hand ML, Spangenberg GC, Forster JW, Cogan NOI. Plastome Sequence Determination and Comparative Analysis for Members of the Lolium-Festuca Grass Species Complex. G3 (BETHESDA, MD.) 2013;3:607-616. [PMID: 23550121 PMCID: PMC3618348 DOI: 10.1534/g3.112.005264] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/04/2012] [Accepted: 01/28/2013] [Indexed: 11/22/2022]
25
Shi C, Liu Y, Huang H, Xia EH, Zhang HB, Gao LZ. Contradiction between plastid gene transcription and function due to complex posttranscriptional splicing: an exemplary study of ycf15 function and evolution in angiosperms. PLoS One 2013;8:e59620. [PMID: 23527231 PMCID: PMC3601113 DOI: 10.1371/journal.pone.0059620] [Citation(s) in RCA: 45] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2012] [Accepted: 02/15/2013] [Indexed: 11/19/2022]  Open
26
Burke SV, Grennan CP, Duvall MR. Plastome sequences of two New World bamboos--Arundinaria gigantea and Cryptochloa strictiflora (Poaceae)--extend phylogenomic understanding of Bambusoideae. AMERICAN JOURNAL OF BOTANY 2012;99:1951-61. [PMID: 23221496 DOI: 10.3732/ajb.1200365] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
27
Sajo MG, Pabón-Mora N, Jardim J, Stevenson DW, Rudall PJ. Homologies of the flower and inflorescence in the early-divergent grass Anomochloa (Poaceae). AMERICAN JOURNAL OF BOTANY 2012;99:614-28. [PMID: 22434776 DOI: 10.3732/ajb.1100290] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
28
Zhang YJ, Ma PF, Li DZ. High-throughput sequencing of six bamboo chloroplast genomes: phylogenetic implications for temperate woody bamboos (Poaceae: Bambusoideae). PLoS One 2011;6:e20596. [PMID: 21655229 PMCID: PMC3105084 DOI: 10.1371/journal.pone.0020596] [Citation(s) in RCA: 195] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2011] [Accepted: 05/05/2011] [Indexed: 11/25/2022]  Open
29
Scarcelli N, Barnaud A, Eiserhardt W, Treier UA, Seveno M, d'Anfray A, Vigouroux Y, Pintaud JC. A set of 100 chloroplast DNA primer pairs to study population genetics and phylogeny in monocotyledons. PLoS One 2011;6:e19954. [PMID: 21637837 PMCID: PMC3102674 DOI: 10.1371/journal.pone.0019954] [Citation(s) in RCA: 77] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2011] [Accepted: 04/07/2011] [Indexed: 11/19/2022]  Open
30
Givnish TJ, Ames M, McNeal JR, McKain MR, Steele PR, dePamphilis CW, Graham SW, Pires JC, Stevenson DW, Zomlefer WB, Briggs BG, Duvall MR, Moore MJ, Heaney JM, Soltis DE, Soltis PS, Thiele K, Leebens-Mack JH. Assembling the Tree of the Monocotyledons: Plastome Sequence Phylogeny and Evolution of Poales1. ANNALS OF THE MISSOURI BOTANICAL GARDEN 2010. [PMID: 0 DOI: 10.3417/2010023] [Citation(s) in RCA: 116] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
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