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Shortlidge EE, Carey SB, Payton AC, McDaniel SF, Rosenstiel TN, Eppley SM. Microarthropod contributions to fitness variation in the common moss Ceratodon purpureus. Proc Biol Sci 2021; 288:20210119. [PMID: 33784868 PMCID: PMC8059975 DOI: 10.1098/rspb.2021.0119] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023] Open
Abstract
The evolution of sustained plant–animal interactions depends critically upon genetic variation in the fitness benefits from the interaction. Genetic analyses of such interactions are limited to a few model systems, in part because genetic variation may be absent or the interacting species may be experimentally intractable. Here, we examine the role of sperm-dispersing microarthropods in shaping reproduction and genetic variation in mosses. We established experimental mesocosms with known moss genotypes and inferred the parents of progeny from mesocosms with and without microarthropods, using a pooled sequencing approach. Moss reproductive rates increased fivefold in the presence of microarthropods, relative to control mesocosms. Furthermore, the presence of microarthropods increased the total number of reproducing moss genotypes, and changed the rank-order of fitness of male and female moss genotypes. Interestingly, the genotypes that reproduced most frequently did not produce sporophytes with the most spores, highlighting the challenge of defining fitness in mosses. These results demonstrate that microarthropods provide a fitness benefit for mosses, and highlight the potential for biotic dispersal agents to alter fitness among moss genotypes.
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Affiliation(s)
- Erin E Shortlidge
- Department of Biology, Portland State University, PO Box 751, Portland, OR 97202-0751, USA
| | - Sarah B Carey
- Department of Biology, University of Florida, PO Box 118525, Gainesville, FL 32611-8525, USA
| | - Adam C Payton
- Department of Biology, University of Florida, PO Box 118525, Gainesville, FL 32611-8525, USA
| | - Stuart F McDaniel
- Department of Biology, University of Florida, PO Box 118525, Gainesville, FL 32611-8525, USA
| | - Todd N Rosenstiel
- Department of Biology, Portland State University, PO Box 751, Portland, OR 97202-0751, USA
| | - Sarah M Eppley
- Department of Biology, Portland State University, PO Box 751, Portland, OR 97202-0751, USA
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Vigalondo B, Garilleti R, Vanderpoorten A, Patiño J, Draper I, Calleja JA, Mazimpaka V, Lara F. Do mosses really exhibit so large distribution ranges? Insights from the integrative taxonomic study of the Lewinskya affinis complex (Orthotrichaceae, Bryopsida). Mol Phylogenet Evol 2019; 140:106598. [PMID: 31430552 DOI: 10.1016/j.ympev.2019.106598] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2019] [Revised: 07/30/2019] [Accepted: 08/15/2019] [Indexed: 02/07/2023]
Abstract
The strikingly lower number of bryophyte species, and in particular of endemic species, and their larger distribution ranges in comparison with angiosperms, have traditionally been interpreted in terms of their low diversification rates associated with a high long-distance dispersal capacity. This hypothesis is tested here with Lewinskya affinis (≡ Orthotrichum affine), a moss species widely spread across Europe, North and East Africa, southwestern Asia, and western North America. We tested competing taxonomic hypotheses derived from separate and combined analyses of multilocus sequence data, morphological characters, and geographical distributions. The best hypothesis, selected by a Bayes factor molecular delimitation analysis, established that L. affinis is a complex of no less than seven distinct species, including L. affinis s.str., L. fastigiata and L. leptocarpa, which were previously reduced into synonymy with L. affinis, and four new species. Discriminant analyses indicated that each of the seven species within L. affinis s.l. can be morphologically identified with a minimal error rate. None of these species exhibit a trans-oceanic range, suggesting that the broad distributions typically exhibited by moss species largely result from a taxonomic artefact. The presence of three sibling western North American species on the one hand, and four Old World sibling species on the other, suggests that there is a tendency for within-continent diversification rather than recurrent dispersal following speciation. The faster rate of diversification as compared to intercontinental migration reported here is in sharp contrast with earlier views of bryophyte species with wide ranges and low speciation rates.
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Affiliation(s)
- B Vigalondo
- Departamento de Biología (Botánica), Facultad de Ciencias, Universidad Autónoma de Madrid, Madrid 28049, Spain.
| | - R Garilleti
- Departamento de Botánica y Geología, Facultad de Farmacia, Universidad de Valencia, Burjassot, 46100, Spain
| | - A Vanderpoorten
- Institute of Botany, University of Liège, B22 Sart Tilman, B-4000 Liège, Belgium
| | - J Patiño
- Plant Conservation and Biogeography, Departamento de Botánica, Ecología y Fisiología Vegetal, Universidad de La Laguna, La Laguna 38071, Spain; Island Ecology and Evolution Research Group, Instituto de Productos Naturales & Agrobiología (IPNA-CSIC), La Laguna, Tenerife, Spain
| | - I Draper
- Departamento de Biología (Botánica), Facultad de Ciencias, Universidad Autónoma de Madrid, Madrid 28049, Spain
| | | | - V Mazimpaka
- Departamento de Biología (Botánica), Facultad de Ciencias, Universidad Autónoma de Madrid, Madrid 28049, Spain
| | - F Lara
- Departamento de Biología (Botánica), Facultad de Ciencias, Universidad Autónoma de Madrid, Madrid 28049, Spain
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Ledent A, Désamoré A, Laenen B, Mardulyn P, McDaniel SF, Zanatta F, Patiño J, Vanderpoorten A. No borders during the post-glacial assembly of European bryophytes. Ecol Lett 2019; 22:973-986. [PMID: 30900805 DOI: 10.1111/ele.13254] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2018] [Revised: 11/11/2018] [Accepted: 02/24/2019] [Indexed: 11/28/2022]
Abstract
Climatic fluctuations during the Last Glacial Maximum (LGM) exerted a profound influence on biodiversity patterns, but their impact on bryophytes, the second most diverse group of land plants, has been poorly documented. Approximate Bayesian computations based on coalescent simulations showed that the post-glacial assembly of European bryophytes involves a complex history from multiple sources. The contribution of allochthonous migrants was 95-100% of expanding populations in about half of the 15 investigated species, which is consistent with the globally balanced genetic diversities and extremely low divergence observed among biogeographical regions. Such a substantial contribution of allochthonous migrants in the post-glacial assembly of Europe is unparalleled in other plants and animals. The limited role of northern micro-refugia, which was unexpected based on bryophyte life-history traits, and of southern refugia, is consistent with recent palaeontological evidence that LGM climates in Eurasia were much colder and drier than what palaeoclimatic models predict.
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Affiliation(s)
- A Ledent
- Institute of Botany, University of Liege, Sart Tilman, 4000, Liege, Belgium
| | - A Désamoré
- Department of Ecology, Environment, and Plant Sciences, Science for Life Laboratory, Stockholm University, Stockholm, Sweden
| | - B Laenen
- Department of Ecology, Environment, and Plant Sciences, Science for Life Laboratory, Stockholm University, Stockholm, Sweden
| | - P Mardulyn
- Evolutionary Biology & Ecology, Université Libre de Bruxelles, 1050, Brussels, Belgium
| | - S F McDaniel
- Biology Department, University of Florida, Gainesville, FL, 32611, USA
| | - F Zanatta
- Institute of Botany, University of Liege, Sart Tilman, 4000, Liege, Belgium
| | - J Patiño
- Plant Conservation and Biogeography Group, Departamento de Botánica, Ecología y Fisiología Vegetal, Universidad de La Laguna, 38071, La Laguna, Spain.,Island Ecology and Evolution Research Group, Instituto de Productos Naturales y Agrobiología (IPNA-CSIC), 38071, La Laguna, Spain
| | - A Vanderpoorten
- Institute of Botany, University of Liege, Sart Tilman, 4000, Liege, Belgium
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Nieto-Lugilde M, Werner O, McDaniel SF, Koutecký P, Kučera J, Rizk SM, Ros RM. Peripatric speciation associated with genome expansion and female-biased sex ratios in the moss genus Ceratodon. AMERICAN JOURNAL OF BOTANY 2018; 105:1009-1020. [PMID: 29957852 DOI: 10.1002/ajb2.1107] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/21/2017] [Accepted: 03/21/2018] [Indexed: 06/08/2023]
Abstract
PREMISE OF THE STUDY A period of allopatry is widely believed to be essential for the evolution of reproductive isolation. However, strict allopatry may be difficult to achieve in some cosmopolitan, spore-dispersed groups, like mosses. We examined the genetic and genome size diversity in Mediterranean populations of the moss Ceratodon purpureus s.l. to evaluate the role of allopatry and ploidy change in population divergence. METHODS We sampled populations of the genus Ceratodon from mountainous areas and lowlands of the Mediterranean region, and from Western and Central Europe. We performed phylogenetic and coalescent analyses on sequences from five nuclear introns and a chloroplast locus to reconstruct their evolutionary history. We also estimated genome size using flow cytometry (employing propidium iodide) and determined the sex of samples using a sex-linked PCR marker. KEY RESULTS Two well-differentiated clades were resolved, discriminating two homogeneous groups: the widespread C. purpureus and a local group mostly restricted to the mountains in Southern Spain. The latter also possessed a genome size 25% larger than the widespread C. purpureus, and the samples of this group consist entirely of females. We also found hybrids, and some of them had a genome size equivalent to the sum of the C. purpureus and Spanish genome, suggesting that they arose by allopolyploidy. CONCLUSIONS These data suggest that a new species of Ceratodon arose via peripatric speciation, potentially involving a genome size change and a strong female-biased sex ratio. The new species has hybridized in the past with C. purpureus.
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Affiliation(s)
- Marta Nieto-Lugilde
- Departamento de Biología Vegetal, Facultad de Biología, Universidad de Murcia, Campus de Espinardo, 30100, Murcia, Spain
| | - Olaf Werner
- Departamento de Biología Vegetal, Facultad de Biología, Universidad de Murcia, Campus de Espinardo, 30100, Murcia, Spain
| | - Stuart F McDaniel
- Biology Department, University of Florida, Gainesville, Florida, 32611, USA
| | - Petr Koutecký
- Faculty of Science, University of South Bohemia, Branišovská 1760, CZ-370 05, České Budějovice, Czech Republic
| | - Jan Kučera
- Faculty of Science, University of South Bohemia, Branišovská 1760, CZ-370 05, České Budějovice, Czech Republic
| | - Samah Mohamed Rizk
- Genetics Department, Faculty of Agriculture, Ain Shams University, 68 Hadayek Shubra, 11241, Cairo, Egypt
| | - Rosa M Ros
- Departamento de Biología Vegetal, Facultad de Biología, Universidad de Murcia, Campus de Espinardo, 30100, Murcia, Spain
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Désamoré A, Patiño J, Mardulyn P, Mcdaniel SF, Zanatta F, Laenen B, Vanderpoorten A. High migration rates shape the postglacial history of amphi-Atlantic bryophytes. Mol Ecol 2016; 25:5568-5584. [PMID: 27661065 DOI: 10.1111/mec.13839] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2015] [Revised: 08/29/2016] [Accepted: 08/31/2016] [Indexed: 11/28/2022]
Abstract
Paleontological evidence and current patterns of angiosperm species richness suggest that European biota experienced more severe bottlenecks than North American ones during the last glacial maximum. How well this pattern fits other plant species is less clear. Bryophytes offer a unique opportunity to contrast the impact of the last glacial maximum in North America and Europe because about 60% of the European bryoflora is shared with North America. Here, we use population genetic analyses based on approximate Bayesian computation on eight amphi-Atlantic species to test the hypothesis that North American populations were less impacted by the last glacial maximum, exhibiting higher levels of genetic diversity than European ones and ultimately serving as a refugium for the postglacial recolonization of Europe. In contrast with this hypothesis, the best-fit demographic model involved similar patterns of population size contractions, comparable levels of genetic diversity and balanced migration rates between European and North American populations. Our results thus suggest that bryophytes have experienced comparable demographic glacial histories on both sides of the Atlantic. Although a weak, but significant genetic structure was systematically recovered between European and North American populations, evidence for migration from and towards both continents suggests that amphi-Atlantic bryophyte population may function as a metapopulation network. Reconstructing the biogeographic history of either North American or European bryophyte populations therefore requires a large, trans-Atlantic geographic framework.
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Affiliation(s)
- Aurélie Désamoré
- Institute of Botany, University of Liège, B22 Sart Tilman, Liège, Belgium. .,Department of Zoology, Swedish Museum of Natural History, Box 50007, SE-104 05, Stockholm, Sweden.
| | - Jairo Patiño
- Institute of Botany, University of Liège, B22 Sart Tilman, Liège, Belgium.,Island Ecology and Evolution Research Group, Instituto de Productos Naturales y Agrobiología (IPNA-CSIC), Tenerife, Canary Islands, 38206, Spain.,Centre for Ecology, Evolution and Environmental Changes and Platform for Enhancing Ecological Research & Sustainability, Universidade dos Açores, 9700-042, Angra do Heroísmo, Terceira, Açores, Portugal
| | - Patrick Mardulyn
- Department of Evolutionary Biology and Ecology, Université libre de Bruxelles, Campus du Solbosch, Avenue F.D. Roosevelt 50, 1050, Bruxelles, Belgium
| | - Stuart F Mcdaniel
- Department of Biology, University of Florida, Box 118525, Gainesville, FL, 32611-8525, USA
| | - Florian Zanatta
- Institute of Botany, University of Liège, B22 Sart Tilman, Liège, Belgium
| | - Benjamin Laenen
- Institute of Botany, University of Liège, B22 Sart Tilman, Liège, Belgium.,SciLifeLab Stockholm, Department of Ecology, Environment and Plant Sciences, Stockholm University, Tomtebodav. 23a, 171 21, Solna, Stockholm, Sweden
| | - Alain Vanderpoorten
- Institute of Botany, University of Liège, B22 Sart Tilman, Liège, Belgium.,Island Ecology and Evolution Research Group, Instituto de Productos Naturales y Agrobiología (IPNA-CSIC), Tenerife, Canary Islands, 38206, Spain
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Norhazrina N, Vanderpoorten A, Hedenäs L, Patiño J. What are the evolutionary mechanisms explaining the similar species richness patterns in tropical mosses? Insights from the phylogeny of the pantropical genus Pelekium. Mol Phylogenet Evol 2016; 105:139-145. [PMID: 27530707 DOI: 10.1016/j.ympev.2016.08.008] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2016] [Revised: 08/02/2016] [Accepted: 08/12/2016] [Indexed: 11/25/2022]
Abstract
As opposed to angiosperms, moss species richness is similar among tropical regions of the world, in line with the hypothesis that tropical bryophytes are extremely good dispersers. Here, we reconstructed the phylogeny of the pantropical moss genus Pelekium to test the hypothesis that high migration rates erase any difference in species richness among tropical regions. In contrast with this hypothesis, several species considered to have a pantropical range were resolved as a complex of species with a strong geographic structure. Consequently, a significant phylogeographical signal was found in the data, evidencing that cladogenetic diversification within regions takes place at a faster rate than intercontinental migration. The shape of the Pelekium phylogeny, along with the selection of a constant-rate model of diversification among species in the genus, suggests, however, that the cladogenetic speciation patterns observed in Pelekium are not comparable to some of the spectacular examples of tropical radiations reported in angiosperms. Rather, the results presented here point to the constant accumulation of diversity through time in Pelekium. This, combined with evidence for long-distance dispersal limitations in the genus, suggests that the similar patterns of species richness among tropical areas are better explained in terms of comparable rates of diversification across tropical regions than by the homogenization of species richness by recurrent migrations.
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Affiliation(s)
- Nik Norhazrina
- University of Liege, Institute of Botany, B22 Sart Tilman, Liege, Belgium; School of Environmental and Natural Resource Sciences, Faculty of Sciences, National University of Malaysia, 43600 Bangi, Selangor, Malaysia
| | | | - Lars Hedenäs
- Department of Botany, Swedish Museum of Natural History, Box 50007, SE-104 05 Stockholm, Sweden
| | - Jairo Patiño
- Island Ecology and Evolution Research Group, Instituto de Productos Naturales y Agrobiología (IPNA-CSIC), Laguna, Tenerife, Canary Islands, 38206, Spain
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Patiño J, Carine M, Mardulyn P, Devos N, Mateo RG, González-Mancebo JM, Shaw AJ, Vanderpoorten A. Approximate Bayesian Computation Reveals the Crucial Role of Oceanic Islands for the Assembly of Continental Biodiversity. Syst Biol 2015; 64:579-89. [DOI: 10.1093/sysbio/syv013] [Citation(s) in RCA: 54] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2014] [Accepted: 02/14/2015] [Indexed: 11/13/2022] Open
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Szövényi P, Devos N, Weston DJ, Yang X, Hock Z, Shaw JA, Shimizu KK, McDaniel SF, Wagner A. Efficient purging of deleterious mutations in plants with haploid selfing. Genome Biol Evol 2014; 6:1238-52. [PMID: 24879432 PMCID: PMC4041004 DOI: 10.1093/gbe/evu099] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023] Open
Abstract
In diploid organisms, selfing reduces the efficiency of selection in removing deleterious mutations from a population. This need not be the case for all organisms. Some plants, for example, undergo an extreme form of selfing known as intragametophytic selfing, which immediately exposes all recessive deleterious mutations in a parental genome to selective purging. Here, we ask how effectively deleterious mutations are removed from such plants. Specifically, we study the extent to which deleterious mutations accumulate in a predominantly selfing and a predominantly outcrossing pair of moss species, using genome-wide transcriptome data. We find that the selfing species purge significantly more nonsynonymous mutations, as well as a greater proportion of radical amino acid changes which alter physicochemical properties of amino acids. Moreover, their purging of deleterious mutation is especially strong in conserved regions of protein-coding genes. Our observations show that selfing need not impede but can even accelerate the removal of deleterious mutations, and do so on a genome-wide scale.
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Affiliation(s)
- Péter Szövényi
- Institute of Evolutionary Biology and Environmental Studies, University of Zurich, SwitzerlandInstitute of Systematic Botany, University of Zurich, SwitzerlandSwiss Institute of Bioinformatics, Quartier Sorge-Batiment Genopode, Lausanne, SwitzerlandMTA-ELTE-MTM Ecology Research Group, ELTE, Biological Institute, Hungary
| | | | - David J Weston
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN
| | - Xiaohan Yang
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN
| | - Zsófia Hock
- Institute of Systematic Botany, University of Zurich, Switzerland
| | | | - Kentaro K Shimizu
- Institute of Evolutionary Biology and Environmental Studies, University of Zurich, Switzerland
| | | | - Andreas Wagner
- Institute of Evolutionary Biology and Environmental Studies, University of Zurich, SwitzerlandSwiss Institute of Bioinformatics, Quartier Sorge-Batiment Genopode, Lausanne, SwitzerlandBioinformatics Institute, Agency for Science, Technology and Research (A*STAR), SingaporeThe Santa Fe Institute, Santa Fe NM
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McDaniel SF, Neubig KM, Payton AC, Quatrano RS, Cove DJ. Recent gene-capture on the UV sex chromosomes of the moss Ceratodon purpureus. Evolution 2013; 67:2811-22. [PMID: 24094335 DOI: 10.1111/evo.12165] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2012] [Accepted: 05/02/2013] [Indexed: 01/12/2023]
Abstract
Sex chromosomes evolve from ordinary autosomes through the expansion and subsequent degeneration of a region of suppressed recombination that is inherited through one sex. Here we investigate the relative timing of these processes in the UV sex chromosomes of the moss Ceratodon purpureus using molecular population genetic analyses of eight newly discovered sex-linked loci. In this system, recombination is suppressed on both the female-transmitted (U) sex chromosome and the male-transmitted (V) chromosome. Genes on both chromosomes therefore should show the deleterious effects of suppressed recombination and sex-limited transmission, while purifying selection should maintain homologs of genes essential for both sexes on both sex chromosomes. Based on analyses of eight sex-linked loci, we show that the nonrecombining portions of the U and V chromosomes expanded in at least two events (~0.6-1.3 MYA and ~2.8-3.5 MYA), after the divergence of C. purpureus from its dioecious sister species, Trichodon cylindricus and Cheilothela chloropus. Both U- and V-linked copies showed reduced nucleotide diversity and limited population structure, compared to autosomal loci, suggesting that the sex chromosomes experienced more recent selective sweeps that the autosomes. Collectively these results highlight the dynamic nature of gene composition and molecular evolution on nonrecombining portions of the U and V sex chromosomes.
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Affiliation(s)
- Stuart F McDaniel
- Biology Department, University of Florida, Gainesville, Florida, 32611.
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