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Bovolenta GM, Silva-Vera G, Bovino S, Molpeceres G, Kästner J, Vogt-Geisse S. In-depth exploration of catalytic sites on amorphous solid water: I. The astrosynthesis of aminomethanol. Phys Chem Chem Phys 2024; 26:18692-18706. [PMID: 38922674 DOI: 10.1039/d4cp01865f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/27/2024]
Abstract
Chemical processes taking place on ice-grain mantles are pivotal to the complex chemistry of interstellar environments. In this study, we conducted a comprehensive analysis of the catalytic effects of an amorphous solid water (ASW) surface on the reaction between ammonia (NH3) and formaldehyde (H2CO) to form aminomethanol (NH2CH2OH) using density functional theory. We identified potential catalytic sites based on the binding energy distribution of NH3 and H2CO reactants, on a set-of-clusters surface model composed of 22 water molecules and found a total of 14 reaction paths. Our results indicate that the catalytic sites can be categorized into four groups, depending on the interactions of the carbonyl oxygen and the amino group with the ice surface in the reactant complex. A detailed analysis of the reaction mechanism using Intrinsic Reaction Coordinate and reaction force analysis, revealed three distinct chemical events for this reaction: formation of the C-N bond, breaking of the N-H bond, and formation of the O-H hydroxyl bond. Depending on the type of catalytic site, these events can occur within a single, concerted, albeit asynchronous, step, or can be isolated in a step-wise mechanism, with the lowest overall transition state energy observed at 1.3 kcal mol-1. A key requirement for the low-energy mechanism is the presence of a pair of dangling OH bonds on the surface, found at 5% of the potential catalytic sites on an ASW porous surface.
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Affiliation(s)
- Giulia M Bovolenta
- Departamento de Físico-Química, Facultad de Ciencias Químicas, Universidad de Concepción, Concepción, Chile.
- Atomistic Simulations, Italian Institute of Technology, 16152 Genova, Italy
| | - Gabriela Silva-Vera
- Departamento de Físico-Química, Facultad de Ciencias Químicas, Universidad de Concepción, Concepción, Chile.
| | - Stefano Bovino
- Chemistry Department, Sapienza University of Rome, P.le A. Moro, 00185 Rome, Italy
- INAF - Osservatorio Astrofisico di Arcetri, Largo E. Fermi 5, 50125 Firenze, Italy
- Departamento de Astronomía, Facultad de Ciencias Físicas y Matemáticas, Universidad de Concepción, Av. Esteban Iturra s/n Barrio Universitario, Concepción, Chile
| | - German Molpeceres
- Departamento de Astrofísica Molecular Instituto de Física Fundamental (IFF-CSIC), Madrid, Spain
| | - Johannes Kästner
- Institute for Theoretical Chemistry, University of Stuttgart, Pfaffenwaldring 55, 70569 Stuttgart, Germany
| | - Stefan Vogt-Geisse
- Departamento de Físico-Química, Facultad de Ciencias Químicas, Universidad de Concepción, Concepción, Chile.
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Heyl J, Viti S, Vermariën G. A statistical and machine learning approach to the study of astrochemistry. Faraday Discuss 2023; 245:569-585. [PMID: 37309692 DOI: 10.1039/d3fd00008g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
In order to obtain a good understanding of astrochemistry, it is crucial to better understand the key parameters that govern grain-surface chemistry. For many chemical networks, these crucial parameters are the binding energies of the species. However, there exists much disagreement regarding these values in the literature. In this work, a Bayesian inference approach is taken to estimate these values. It is found that this is difficult to do in the absence of enough data. The Massive Optimised Parameter Estimation and Data (MOPED) compression algorithm is then used to help determine which species should be prioritised for future detections in order to better constrain the values of binding energies. Finally, an interpretable machine learning approach is taken in order to better understand the non-linear relationship between binding energies and the final abundances of specific species of interest.
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Affiliation(s)
- Johannes Heyl
- Department of Physics and Astronomy, University College London, Gower Street, WC1E 6BT, London, UK.
| | - Serena Viti
- Leiden Observatory, Leiden University, PO Box 9513, 2300 RA Leiden, The Netherlands
- Department of Physics and Astronomy, University College London, Gower Street, WC1E 6BT, London, UK.
| | - Gijs Vermariën
- Leiden Observatory, Leiden University, PO Box 9513, 2300 RA Leiden, The Netherlands
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Tinacci L, Germain A, Pantaleone S, Ferrero S, Ceccarelli C, Ugliengo P. Theoretical Distribution of the Ammonia Binding Energy at Interstellar Icy Grains: A New Computational Framework. ACS EARTH & SPACE CHEMISTRY 2022; 6:1514-1526. [PMID: 35747467 PMCID: PMC9208021 DOI: 10.1021/acsearthspacechem.2c00040] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/05/2022] [Revised: 05/19/2022] [Accepted: 05/19/2022] [Indexed: 06/15/2023]
Abstract
The binding energies (BE) of molecules on the interstellar grains are crucial in the chemical evolution of the interstellar medium (ISM). Both temperature-programmed desorption (TPD) laboratory experiments and quantum chemistry computations have often provided, so far, only single values of the BE for each molecule. This is a severe limitation, as the ices enveloping the grain mantles are structurally amorphous, giving rise to a manifold of possible adsorption sites, each with different BEs. However, the amorphous ice nature prevents the knowledge of structural details, hindering the development of a common accepted atomistic icy model. In this work, we propose a computational framework that closely mimics the formation of the interstellar grain mantle through a water by water accretion. On that grain, an unbiased random (but well reproducible) positioning of the studied molecule is then carried out. Here we present the test case of NH3, a ubiquitous species in the molecular ISM. We provide the BE distribution computed by a hierarchy approach, using the semiempirical xTB-GFN2 as a low-level method to describe the whole icy cluster in combination with the B97D3 DFT functional as a high-level method on the local zone of the NH3 interaction. The final ZPE-corrected BE is computed at the ONIOM(DLPNO-CCSD(T)//B97D3:xTB-GFN2) level, ensuring the best cost/accuracy ratio. The main peak of the predicted NH3 BE distribution is in agreement with experimental TPD and computed data in the literature. A second broad peak at very low BE values is also present, which has never been detected before. It may provide the solution to a longstanding puzzle about the presence of gaseous NH3 also observed in cold ISM objects.
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Affiliation(s)
- Lorenzo Tinacci
- Dipartimento
di Chimica, Università degli Studi
di Torino, via P. Giuria
7, 10125 Torino, Italy
- Institut
de Planétologie et d’Astrophysique de Grenoble (IPAG), 38000 Grenoble, France
| | - Auréle Germain
- Dipartimento
di Chimica, Università degli Studi
di Torino, via P. Giuria
7, 10125 Torino, Italy
| | - Stefano Pantaleone
- Dipartimento
di Chimica, Università degli Studi
di Torino, via P. Giuria
7, 10125 Torino, Italy
- Dipartimento
di Chimica, Biologia e Biotecnologie, Università
degli Studi di Perugia, 06123 Perugia, Italy
| | - Stefano Ferrero
- Departament
de Quimica, Universitat Autònoma
de Barcelona, 08193 Bellaterra, Catalonia Spain
| | - Cecilia Ceccarelli
- Institut
de Planétologie et d’Astrophysique de Grenoble (IPAG), 38000 Grenoble, France
| | - Piero Ugliengo
- Dipartimento
di Chimica, Università degli Studi
di Torino, via P. Giuria
7, 10125 Torino, Italy
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Upadhyay M, Meuwly M. Energy Redistribution Following CO2 Formation on Cold Amorphous Solid Water. Front Chem 2022; 9:827085. [PMID: 35211461 PMCID: PMC8861491 DOI: 10.3389/fchem.2021.827085] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2021] [Accepted: 12/08/2021] [Indexed: 12/03/2022] Open
Abstract
The formation of molecules in and on amorphous solid water (ASW) as it occurs in interstellar space releases appreciable amounts of energy that need to be dissipated to the environment. Here, energy transfer between CO2 formed within and on the surface of amorphous solid water (ASW) and the surrounding water is studied. Following CO(1Σ+) + O(1D) recombination the average translational and internal energy of the water molecules increases on the ∼10 ps time scale by 15–25% depending on whether the reaction takes place on the surface or in an internal cavity of ASW. Due to tight coupling between CO2 and the surrounding water molecules the internal energy exhibits a peak at early times which is present for recombination on the surface but absent for the process inside ASW. Energy transfer to the water molecules is characterized by a rapid ∼10 ps and a considerably slower ∼1 ns component. Within 50 ps a mostly uniform temperature increase of the ASW across the entire surface is found. The results suggest that energy transfer between a molecule formed on and within ASW is efficient and helps to stabilize the reaction products generated.
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Potapov A, McCoustra M. Physics and chemistry on the surface of cosmic dust grains: a laboratory view. INT REV PHYS CHEM 2021. [DOI: 10.1080/0144235x.2021.1918498] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Affiliation(s)
- Alexey Potapov
- Laboratory Astrophysics Group of the Max Planck Institute for Astronomy at the Friedrich Schiller University Jena, Jena, Germany
| | - Martin McCoustra
- Institute of Chemical Sciences, Heriot-Watt University, Edinburgh, UK
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Sandford SA, Nuevo M, Bera PP, Lee TJ. Prebiotic Astrochemistry and the Formation of Molecules of Astrobiological Interest in Interstellar Clouds and Protostellar Disks. Chem Rev 2020; 120:4616-4659. [DOI: 10.1021/acs.chemrev.9b00560] [Citation(s) in RCA: 71] [Impact Index Per Article: 17.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Scott A. Sandford
- NASA Ames Research Center, MS 245-6, Moffett Field, California 94035, United States
| | - Michel Nuevo
- NASA Ames Research Center, MS 245-6, Moffett Field, California 94035, United States
- BAER Institute, NASA Research Park, MS 18-4, Moffett Field, California 94035, United States
| | - Partha P. Bera
- NASA Ames Research Center, MS 245-6, Moffett Field, California 94035, United States
- BAER Institute, NASA Research Park, MS 18-4, Moffett Field, California 94035, United States
| | - Timothy J. Lee
- NASA Ames Research Center, MS 245-3, Moffett Field, California 94035, United States
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Abstract
The diffusional dynamics of atomic oxygen in and on amorphous solid water (ASW) to form molecular oxygen is characterized. Reactive molecular dynamics simulations to study bond breaking and bond formation show that vibrational relaxation of the highly excited diatomic occurs on the 10 ns to 100 ns time scale. The relaxation process is highly nonexponential and can be characterized by a stretched exponential decay reminiscent of the dynamics of glasses. The stretched exponents range from β = 0.15 for relaxation on the surface to β = 0.21 for the dynamics in bulk. It is also found that coupling of the O2 relaxation to the internal water modes occurs which speeds up the vibrational relaxation by a factor of 4. Extrapolation of the stretched exponential decay to 1 μs yields a final vibrational quantum number v = 2 for O2(X3Σ-g), consistent with experimental results from photolysis of SO2 on ASW at 193 nm which find v ≤ 3. Desorption energies of water from the surface range from 1.5 to 2.0 kcal mol-1 compared with 1.8 kcal mol-1 found from experiment, depending on whether the water molecules are flexible or not.
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Affiliation(s)
- Marco Pezzella
- Department of Chemistry, University of Basel, Klingelbergstrasse 80, CH-4056 Basel, Switzerland.
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Measurements of Diffusion of Volatiles in Amorphous Solid Water: Application to Interstellar Medium Environments. ACTA ACUST UNITED AC 2018. [DOI: 10.3847/1538-4357/aad227] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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