1
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Chen G, Qin Z, Liu L. High-temperature spectra of the PNO molecule based on robust first-principles methods. Phys Chem Chem Phys 2024; 26:15957-15967. [PMID: 38717797 DOI: 10.1039/d4cp01010h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/23/2024]
Abstract
The PNO molecule is an important species found in the interstellar medium, and its spectroscopic information is helpful for its detection. We present the first line list of PNO (X1Σ+) using robust first-principles methods. The analytical potential energy surface and the dipole moment surface were constructed based on 11 942 ab initio points. The variational nuclear motion calculation was implemented in TROVE to obtain the rovibrational energy levels, Einstein A coefficients and other parameters. The J-dependent Coriolis-decoupled Hamiltonian was adopted with k ≤ 15, and the l-type doubling was considered for the bending vibration of the linear molecule. The line list contained almost 5.87 billion transitions between 3.61 million levels with rotational excitation up to J = 200 and was used to generate the PNO spectrum below 3000 K in the wavenumber range from 0 to 6000 cm-1. The millimetre wave spectrum agrees well with available experimental benchmarks. The Fermi resonance effects in the PNO spectrum are universal and complex, resulting in significant intensity increment of the related weak transition. This line list may be helpful for the spectroscopic characterization and possible astronomical detection of PNO, especially in high-temperature environments.
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Affiliation(s)
- Guangan Chen
- School of Energy and Power Engineering, Shandong University, 250061, Jinan, China.
| | - Zhi Qin
- School of Energy and Power Engineering, Shandong University, 250061, Jinan, China.
| | - Linhua Liu
- School of Energy and Power Engineering, Shandong University, 250061, Jinan, China.
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2
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Sanz-Novo M, Redondo P, Sánchez CI, Largo A, Barrientos C, Sordo JÁ. Structure and Spectroscopic Insights for CH 3PCO Isomers: A High-Level Quantum Chemical Study. J Phys Chem A 2024; 128:4083-4091. [PMID: 38723198 PMCID: PMC11129311 DOI: 10.1021/acs.jpca.4c01370] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2024] [Revised: 05/01/2024] [Accepted: 05/01/2024] [Indexed: 05/24/2024]
Abstract
The exploration of phosphorus-bearing species stands as a prolific field in current astrochemical research, particularly within the context of prebiotic chemistry. Herein, we have employed high-level quantum chemistry methodologies to predict the structure and spectroscopic properties of isomers composed of a methyl group and three P, C, and O atoms. We have computed relative and dissociation energies, as well as rotational, rovibrational, and torsional parameters using the B2PLYPD3 functional and the explicitly correlated coupled cluster CCSD(T)-F12b method. Based upon our study, all the isomers exhibit a bent heavy atom skeleton with CH3PCO being the most stable structure, regardless of the level theory employed. Following in energy, we found four high-energy isomers, namely, CH3OCP, CH3CPO, CH3COP, and CH3OPC. The computed adiabatic dissociation energies support the stability of all [CH3, P, C, O] isomers against fragmentation into CH3 and [P, C, O]. Torsional barrier heights associated with the methyl internal rotation for each structure have been computed to evaluate the occurrence of possible A-E splittings in the rotational spectra. For the most stable isomer, CH3PCO, we found a V3 barrier of 82 cm-1, which is slightly larger than that obtained experimentally for the N-counterpart, CH3NCO, yet still very low. Therefore, the analysis of its rotational spectrum can be anticipated as a challenging task owing to the effect of the CH3 internal rotation. The complete set of spectroscopic constants and transition frequencies reported here for the most stable isomer, CH3PCO, is intended to facilitate eventual laboratory searches.
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Affiliation(s)
- Miguel Sanz-Novo
- Centro
de Astrobiología (CAB), INTA-CSIC, Carretera de Ajalvir km 4, Torrejón de Ardoz, 28850 Madrid, Spain
| | - Pilar Redondo
- Departamento
de Química Física, Universidad
de Valladolid, 47011 Valladolid, Spain
| | - Clara Isabel Sánchez
- Departamento
de Química Física, Universidad
de Valladolid, 47011 Valladolid, Spain
| | - Antonio Largo
- Departamento
de Química Física, Universidad
de Valladolid, 47011 Valladolid, Spain
| | - Carmen Barrientos
- Departamento
de Química Física, Universidad
de Valladolid, 47011 Valladolid, Spain
| | - José Ángel Sordo
- Departamento
de Química Física y Analítica, Laboratorio de
Química Computacional, Facultad de Química, Universidad de Oviedo, Julián Clavería 8, 33006 Oviedo, Principado de Asturias, Spain
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3
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Koelemay LA, Gold KR, Ziurys LM. Phosphorus-bearing molecules PO and PN at the edge of the Galaxy. Nature 2023; 623:292-295. [PMID: 37938703 PMCID: PMC10632128 DOI: 10.1038/s41586-023-06616-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2023] [Accepted: 09/06/2023] [Indexed: 11/09/2023]
Abstract
Despite its importance in planet formation and biology1, phosphorus has been identified only in the inner 12 kpc of the Galaxy2-19. The study of this element has been hindered in part by unfavourable atomic transitions2,4,20. Phosphorus is thought to be created by neutron capture on 29Si and 30Si in massive stars20,21, and released into the interstellar medium by Type II supernova explosions2,22. However, models of galactic chemical evolution must arbitrarily increase the supernovae production23 to match observed abundances. Here we present the detection of gas-phase phosphorus in the Outer Galaxy through millimetre spectra of PO and PN. Rotational lines of these molecules were observed in the dense cloud WB89-621, located 22.6 kpc from the Galactic Centre24. The abundances of PO and PN in WB89-621 are comparable to values near the Solar System25. Supernovae are not present in the Outer Galaxy26, suggesting another source of phosphorus, such as 'Galactic Fountains', where supernova material is redistributed through the halo and circumgalactic medium27. However, fountain-enriched clouds are not found at such large distances. Any extragalactic source, such as the Magellanic Clouds, is unlikely to be metal rich28. Phosphorus instead may be produced by neutron-capture processes in lower mass asymptotic giant branch stars29 which are present in the Outer Galaxy. Asymptotic giant branch stars also produce carbon21, flattening the extrapolated metallicity gradient and accounting for the high abundances of C-containing molecules in WB89-621.
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Affiliation(s)
- L A Koelemay
- Department of Chemistry, University of Arizona, Tucson, AZ, USA
| | - K R Gold
- Department of Chemistry, University of Arizona, Tucson, AZ, USA
| | - L M Ziurys
- Department of Chemistry, University of Arizona, Tucson, AZ, USA.
- Department of Astronomy, and Steward Observatory, University of Arizona, Tucson, AZ, USA.
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4
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Baptista L, de Almeida AA. Phosphine Reactivity and Its Implications for Pyrolysis Experiments and Astrochemistry. J Phys Chem A 2023; 127:1000-1012. [PMID: 36661302 DOI: 10.1021/acs.jpca.2c07782] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Abstract
Despite the importance of phosphorus-bearing molecules for life and their abundance outside Earth, the chemistry of those compounds still is poorly described. The present study investigates phosphine (PH3) decomposition and formation pathways. The reactions studied include phosphine thermal dissociation, conversion into PO(2Π), PN(1Σ+), and reactions in the presence of H2O+. The thermodynamic and rate coefficients of all reactions are calculated in the range of 50-2000 K considering the CCSD(T)/6-311G(3df,3pd)//ωB97xD/6-311G(3df,3pd) electronic structure data. The rate coefficients were calculated by RRKM and semiclassical transition-state theory (SCTST). According to our results, PH3 is stable to thermal decomposition at T < 100 K and can be formed promptly by a reaction network involving PH(3Σ-), PO(2Π), and PN(1Σ+). In the presence of radiation or ions, PH3 is readily decomposed. For this reason, it should be mainly associated with dust grains or icy mantles to be observed under the physical conditions prevailing in the interstellar medium (ISM). The intersystem crossing associated with the dissociation of the isomers PON, NPO, and PNO is accessed by multireference methods, and its importance for the gas-phase PH3 formation/destruction is discussed. Also, the implications of the present outcomes on phosphorus astrochemistry are highlighted.
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Affiliation(s)
- Leonardo Baptista
- Departamento de Química e Ambiental, Campus Regional de Resende, Universidade do Estado do Rio de Janeiro, Faculdade de Tecnologia, Rodovia Presidente Dutra km 298, Rio de Janeiro, RJCEP 27537-000, Brazil
| | - Amaury A de Almeida
- Departamento de Astronomia, Cidade Universitária, Universidade de São Paulo, Instituto de Astronomia, Geofísica e Ciências Atmosféricas, Rua do Matão 1226, São Paulo, SPCEP 05508-090, Brazil
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5
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Todd ZR. Sources of Nitrogen-, Sulfur-, and Phosphorus-Containing Feedstocks for Prebiotic Chemistry in the Planetary Environment. Life (Basel) 2022; 12:1268. [PMID: 36013447 PMCID: PMC9410288 DOI: 10.3390/life12081268] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2022] [Revised: 08/13/2022] [Accepted: 08/17/2022] [Indexed: 11/21/2022] Open
Abstract
Biochemistry on Earth makes use of the key elements carbon, hydrogen, oxygen, nitrogen, phosphorus, and sulfur (or CHONPS). Chemically accessible molecules containing these key elements would presumably have been necessary for prebiotic chemistry and the origins of life on Earth. For example, feedstock molecules including fixed nitrogen (e.g., ammonia, nitrite, nitrate), accessible forms of phosphorus (e.g., phosphate, phosphite, etc.), and sources of sulfur (e.g., sulfide, sulfite) may have been necessary for the origins of life, given the biochemistry seen in Earth life today. This review describes potential sources of nitrogen-, sulfur-, and phosphorus-containing molecules in the context of planetary environments. For the early Earth, such considerations may be able to aid in the understanding of our own origins. Additionally, as we learn more about potential environments on other planets (for example, with upcoming next-generation telescope observations or new missions to explore other bodies in our Solar System), evaluating potential sources for elements necessary for life (as we know it) can help constrain the potential habitability of these worlds.
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Affiliation(s)
- Zoe R Todd
- Department of Earth and Space Sciences, University of Washington, Seattle, WA 98195, USA
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6
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Gomes ACR, Rocha CMR, Jasper AW, Galvão BRL. Formation of phosphorus monoxide through the [Formula: see text] reaction. J Mol Model 2022; 28:259. [PMID: 35978224 DOI: 10.1007/s00894-022-05242-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2022] [Accepted: 07/19/2022] [Indexed: 11/24/2022]
Abstract
Phosphorus is a key and vital element for a diverse set of important biological molecules, being indispensable for life as we know. A deeper comprehension of its role in astrochemistry and atmospheric chemistry may aid in finding answers to how this element became available on Earth. The PO molecule is one of the main reservoirs of phosphorus in the interstellar medium (ISM), and a better understanding of the mechanisms and rate coefficients for its formation in the ISM is important for modelling its abundances. In this work, we perform multireference configuration interaction calculations on the formation of PO via the [Formula: see text] reaction, analyzing its potential energy surface and rate coefficients for the global reaction on both doublet and quartet states. We also perform DFT (M06-2X) and CCSD(T) calculations, in order to compare the results. We found that the OPO system possesses a high multiconfigurational character, making DFT and CCSD methodologies not suitable for its potential energy landscape calculation. The rate coefficients have been calculated using the master equation system solver (MESS) package, and the results compared to recent experimental data. It is shown that the quartet state contributes for temperatures higher than 700K. The computed rate coefficient can be described by a modified Arrhenius equation [[Formula: see text]] with [Formula: see text], [Formula: see text] and [Formula: see text] K.
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Affiliation(s)
- Alexandre C R Gomes
- Centro Federal de Educação Tecnológica de Minas Gerais, CEFET-MG, Av. Amazonas 5253, 30421-169, Belo Horizonte, Minas Gerais, Brazil
| | - Carlos M R Rocha
- Laboratory for Astrophysics, Leiden Observatory, Leiden University, P.O. Box 9513, NL-2300 RA, Leiden, The Netherlands
| | - Ahren W Jasper
- Chemical Sciences and Engineering Division, Argonne National Laboratory, Lemont, IL, 60439, USA
| | - Breno R L Galvão
- Centro Federal de Educação Tecnológica de Minas Gerais, CEFET-MG, Av. Amazonas 5253, 30421-169, Belo Horizonte, Minas Gerais, Brazil
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7
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Bizzocchi L, Alessandrini S, Melosso M, Rivilla VM, Puzzarini C. Ab Initio Study of Fine and Hyperfine Interactions in Triplet POH. Molecules 2022; 27:302. [PMID: 35011533 PMCID: PMC8746536 DOI: 10.3390/molecules27010302] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2021] [Revised: 12/28/2021] [Accepted: 12/30/2021] [Indexed: 11/16/2022] Open
Abstract
Phosphorous-containing molecules have a great relevance in prebiotic chemistry in view of the fact that phosphorous is a fundamental constituent of biomolecules, such as RNA, DNA, and ATP. Its biogenic importance has led astrochemists to investigate the possibility that P-bearing species could have formed in the interstellar medium (ISM) and subsequently been delivered to early Earth by rocky bodies. However, only two P-bearing molecules have been detected so far in the ISM, with the chemistry of interstellar phosphorous remaining poorly understood. Here, in order to shed further light on P-carriers in space, we report a theoretical spectroscopic characterisation of the rotational spectrum of POH in its 3A″ ground electronic state. State-of-the-art coupled-cluster schemes have been employed to derive rotational constants, centrifugal distortion terms, and most of the fine and hyperfine interaction parameters, while the electron spin-spin dipolar coupling has been investigated using the multi-configuration self-consistent-field method. The computed spectroscopic parameters have been used to simulate the appearance of triplet POH rotational and ro-vibrational spectra in different conditions, from cold to warm environments, either in gas-phase experiments or in molecular clouds. Finally, we point out that the predicted hyperfine structures represent a key pattern for the recognition of POH in laboratory and interstellar spectra.
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Affiliation(s)
- Luca Bizzocchi
- Scuola Normale Superiore, Piazza dei Cavalieri 7, 56126 Pisa, Italy; (L.B.); (S.A.)
- Dipartimento di Chimica “Giacomo Ciamician”, Università di Bologna, Via F. Selmi 2, 40126 Bologna, Italy;
| | - Silvia Alessandrini
- Scuola Normale Superiore, Piazza dei Cavalieri 7, 56126 Pisa, Italy; (L.B.); (S.A.)
- Dipartimento di Chimica “Giacomo Ciamician”, Università di Bologna, Via F. Selmi 2, 40126 Bologna, Italy;
| | - Mattia Melosso
- Dipartimento di Chimica “Giacomo Ciamician”, Università di Bologna, Via F. Selmi 2, 40126 Bologna, Italy;
- Scuola Superiore Meridionale, Università di Napoli Federico II, Largo San Marcellino 10, 80138 Naples, Italy
| | - Víctor M. Rivilla
- Centro de Astrobiología (CSIC-INTA), Ctra. de Ajalvir Km. 4, Torrejón de Ardoz, 28850 Madrid, Spain;
- INAF—Osservatorio Astrofisico di Arcetri, Largo E. Fermi 5, 50125 Florence, Italy
| | - Cristina Puzzarini
- Dipartimento di Chimica “Giacomo Ciamician”, Università di Bologna, Via F. Selmi 2, 40126 Bologna, Italy;
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8
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Chu X, Qian W, Lu B, Wang L, Qin J, Li J, Rauhut G, Trabelsi T, Francisco JS, Zeng X. The Triplet Hydroxyl Radical Complex of Phosphorus Monoxide. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202011512] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Affiliation(s)
- Xianxu Chu
- College of Chemistry Chemical Engineering and Materials Science Soochow University Suzhou 215123 China
| | - Weiyu Qian
- College of Chemistry Chemical Engineering and Materials Science Soochow University Suzhou 215123 China
| | - Bo Lu
- College of Chemistry Chemical Engineering and Materials Science Soochow University Suzhou 215123 China
| | - Lina Wang
- Department of Chemistry Fudan University Shanghai 200433 China
| | - Jie Qin
- School of Chemistry and Chemical Engineering and Chongqing Key Laboratory of Theoretical and Computational Chemistry Chongqing University Chongqing 401331 China
| | - Jun Li
- School of Chemistry and Chemical Engineering and Chongqing Key Laboratory of Theoretical and Computational Chemistry Chongqing University Chongqing 401331 China
| | - Guntram Rauhut
- Institute for Theoretical Chemistry University of Stuttgart Pfaffenwaldring 55 70569 Stuttgart Germany
| | - Tarek Trabelsi
- Department of Earth and Environment Science and Department of Chemistry University of Pennsylvania Philadelphia Pennsylvania 19104-6243 USA
| | - Joseph S. Francisco
- Department of Earth and Environment Science and Department of Chemistry University of Pennsylvania Philadelphia Pennsylvania 19104-6243 USA
| | - Xiaoqing Zeng
- College of Chemistry Chemical Engineering and Materials Science Soochow University Suzhou 215123 China
- Department of Chemistry Fudan University Shanghai 200433 China
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9
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Chu X, Qian W, Lu B, Wang L, Qin J, Li J, Rauhut G, Trabelsi T, Francisco JS, Zeng X. The Triplet Hydroxyl Radical Complex of Phosphorus Monoxide. Angew Chem Int Ed Engl 2020; 59:21949-21953. [PMID: 33073924 DOI: 10.1002/anie.202011512] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2020] [Indexed: 01/07/2023]
Abstract
Phosphorus monoxide (. PO) is a key intermediate in phosphorus chemistry, and its association with the hydroxyl radical (. OH) to yield metaphosphorous acid (cis-HOPO) contributes to the chemiluminescence in the combustion of phosphines. When photolyzing cis-HOPO in an Ar-matrix at 2.8 K, the simplest dioxophosphorane HPO2 and an elusive hydroxyl radical complex (HRC) of . PO form. This prototypical radical-radical complex reforms into cis-HOPO at above 12.0 K by overcoming a barrier of 0.28±0.02 kcal mol-1 . The vibrational spectra of this HRC and its D- and 18 O-isotopologues suggest a structure of . OH⋅⋅⋅OP. , for which a triplet spin multiplicity with a binding energy of -3.20 kcal mol-1 has been computed at the UCCSD(T)-F12a/aug-cc-pVTZ level.
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Affiliation(s)
- Xianxu Chu
- College of Chemistry, Chemical Engineering and Materials Science, Soochow University, Suzhou, 215123, China
| | - Weiyu Qian
- College of Chemistry, Chemical Engineering and Materials Science, Soochow University, Suzhou, 215123, China
| | - Bo Lu
- College of Chemistry, Chemical Engineering and Materials Science, Soochow University, Suzhou, 215123, China
| | - Lina Wang
- Department of Chemistry, Fudan University, Shanghai, 200433, China
| | - Jie Qin
- School of Chemistry and Chemical Engineering and Chongqing Key Laboratory of Theoretical and Computational Chemistry, Chongqing University, Chongqing, 401331, China
| | - Jun Li
- School of Chemistry and Chemical Engineering and Chongqing Key Laboratory of Theoretical and Computational Chemistry, Chongqing University, Chongqing, 401331, China
| | - Guntram Rauhut
- Institute for Theoretical Chemistry, University of Stuttgart, Pfaffenwaldring 55, 70569, Stuttgart, Germany
| | - Tarek Trabelsi
- Department of Earth and Environment Science and Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania, 19104-6243, USA
| | - Joseph S Francisco
- Department of Earth and Environment Science and Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania, 19104-6243, USA
| | - Xiaoqing Zeng
- College of Chemistry, Chemical Engineering and Materials Science, Soochow University, Suzhou, 215123, China
- Department of Chemistry, Fudan University, Shanghai, 200433, China
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10
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Jiménez-Serra I, Martín-Pintado J, Rivilla VM, Rodríguez-Almeida L, Alonso Alonso ER, Zeng S, Cocinero EJ, Martín S, Requena-Torres M, Martín-Domenech R, Testi L. Toward the RNA-World in the Interstellar Medium-Detection of Urea and Search of 2-Amino-oxazole and Simple Sugars. ASTROBIOLOGY 2020; 20:1048-1066. [PMID: 32283036 DOI: 10.1089/ast.2019.2125] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
In the past decade, astrochemistry has witnessed an impressive increase in the number of detections of complex organic molecules. Some of these species are of prebiotic interest such as glycolaldehyde, the simplest sugar, or aminoacetonitrile, a possible precursor of glycine. Recently, we have reported the detection of two new nitrogen-bearing complex organics, glycolonitrile and Z-cyanomethanimine, known to be intermediate species in the formation process of ribonucleotides within theories of a primordial RNA-world for the origin of life. In this study, we present deep and high-sensitivity observations toward two of the most chemically rich sources in the galaxy: a giant molecular cloud in the center of the Milky Way (G + 0.693-0.027) and a proto-Sun (IRAS16293-2422 B). Our aim is to explore whether the key precursors considered to drive the primordial RNA-world chemistry are also found in space. Our high-sensitivity observations reveal that urea is present in G + 0.693-0.027 with an abundance of ∼5 × 10-11. This is the first detection of this prebiotic species outside a star-forming region. Urea remains undetected toward the proto-Sun IRAS16293-2422 B (upper limit to its abundance of ≤2 × 10-11). Other precursors of the RNA-world chemical scheme such as glycolaldehyde or cyanamide are abundant in space, but key prebiotic species such as 2-amino-oxazole, glyceraldehyde, or dihydroxyacetone are not detected in either source. Future more sensitive observations targeting the brightest transitions of these species will be needed to disentangle whether these large prebiotic organics are certainly present in space.
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Affiliation(s)
| | | | | | | | - Elena R Alonso Alonso
- Departamento de Química Física, Facultad de Ciencia y Tecnología, Universidad del País Vasco, (UPV-EHU), Bilbao, Spain
- Biofisika Institute (CSIC, UPV/EHU), Leioa, Spain
| | - Shaoshan Zeng
- School of Physics and Astronomy, Queen Mary University of London, London, United Kingdom
| | - Emilio J Cocinero
- Departamento de Química Física, Facultad de Ciencia y Tecnología, Universidad del País Vasco, (UPV-EHU), Bilbao, Spain
- Biofisika Institute (CSIC, UPV/EHU), Leioa, Spain
| | - Sergio Martín
- European Southern Observatory, Vitacura, Chile
- Joint ALMA Observatory, Vitacura, Chile
| | | | | | - Leonardo Testi
- INAF-Osservatorio Astrofisico di Arcetri, Florence, Italy
- European Southern Observatory, Garching bei München, Germany
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11
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Murga MS, Wiebe DS, Vasyunin AI, Varakin VN, Stolyarov AV. Experimental and theoretical studies of photoinduced reactions in the solid phase of the interstellar medium. RUSSIAN CHEMICAL REVIEWS 2020. [DOI: 10.1070/rcr4912] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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12
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13
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14
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Zeng S, Quénard D, Jiménez-Serra I, Martín-Pintado J, Rivilla VM, Testi L, Martín-Doménech R. First detection of the pre-biotic molecule glycolonitrile (HOCH2CN) in the interstellar medium. ACTA ACUST UNITED AC 2019. [DOI: 10.1093/mnrasl/slz002] [Citation(s) in RCA: 34] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
Affiliation(s)
- S Zeng
- School of Physics and Astronomy, Queen Mary University of London, Mile End Road, E1 4NS London, United Kingdom
| | - D Quénard
- School of Physics and Astronomy, Queen Mary University of London, Mile End Road, E1 4NS London, United Kingdom
| | - I Jiménez-Serra
- Centro de Astrobiología (CSIC, INTA), Ctra. de Ajalvir, km. 4, Torrejón de Ardoz, E-28850 Madrid, Spain
| | - J Martín-Pintado
- Centro de Astrobiología (CSIC, INTA), Ctra. de Ajalvir, km. 4, Torrejón de Ardoz, E-28850 Madrid, Spain
| | - V M Rivilla
- INAF-Osservatorio Astrofisico di Arcetri, Largo Enrico Fermi 5, I-50125 Florence, Italy
| | - L Testi
- INAF-Osservatorio Astrofisico di Arcetri, Largo Enrico Fermi 5, I-50125 Florence, Italy
- Excellence Cluster ‘Universe’, Boltzmann str. 2, D-85748 Garching bei Muenchen, Germany
- ESO/European Southern Observatory, Karl Schwarzschild str. 2, D-85748 Garching, Germany
| | - R Martín-Doménech
- Harvard-Smithsonian Center for Astrophysics, 60 Garden Street, MA 02138 Cambridge, USA
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15
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Rivilla VM, Martín-Pintado J, Jiménez-Serra I, Zeng S, Martín S, Armijos-Abendaño J, Requena-Torres MA, Aladro R, Riquelme D. Abundant Z-cyanomethanimine in the interstellar medium: paving the way to the synthesis of adenine. ACTA ACUST UNITED AC 2018. [DOI: 10.1093/mnrasl/sly228] [Citation(s) in RCA: 43] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Affiliation(s)
- V M Rivilla
- INAF-Osservatorio Astrofisico di Arcetri, Largo Enrico Fermi 5, I-50125, Florence, Italy
| | - J Martín-Pintado
- Centro de Astrobiología (CSIC−INTA). Ctra de Ajalvir, km. 4, Torrejón de Ardoz, E-28850 Madrid, Spain
| | - I Jiménez-Serra
- Centro de Astrobiología (CSIC−INTA). Ctra de Ajalvir, km. 4, Torrejón de Ardoz, E-28850 Madrid, Spain
| | - S Zeng
- School of Physics and Astronomy, Queen Mary University of London, Mile End Road, E1 4NS London, United Kingdom
| | - S Martín
- European Southern Observatory (ESO), Alonso de Córdova 3107, Vitacura, 763 0355 Santiago, Chile
- Joint ALMA Observatory, Alonso de Córdova 3107, Vitacura, Santiago, Chile
| | - J Armijos-Abendaño
- Observatorio Astronómico de Quito, Escuela Politécnica Nacional, Av. Gran Colombia S/N, Interior del Parque La Alameda, 170136 Quito, Ecuador
| | - M A Requena-Torres
- Department of Astronomy, University of Maryland, College Park, ND 20742-2421, USA
| | - R Aladro
- Max-Planck-Institut für Radioastronomie, Auf dem Hügel 69, D-53121 Bonn, Germany
| | - D Riquelme
- Max-Planck-Institut für Radioastronomie, Auf dem Hügel 69, D-53121 Bonn, Germany
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16
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17
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18
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Mininni C, Fontani F, Rivilla VM, Beltrán MT, Caselli P, Vasyunin A. On the origin of phosphorus nitride in star-forming regions. ACTA ACUST UNITED AC 2018. [DOI: 10.1093/mnrasl/sly026] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- C Mininni
- Dipartimento di Fisica e Astronomia, Università degli Studi di Firenze, I-50125 Firenze, Italy
| | - F Fontani
- INAF/Osservatorio Astrofisico di Arcetri, Largo Enrico Fermi 5, I-50125, Florence, Italy
| | - V M Rivilla
- INAF/Osservatorio Astrofisico di Arcetri, Largo Enrico Fermi 5, I-50125, Florence, Italy
| | - M T Beltrán
- INAF/Osservatorio Astrofisico di Arcetri, Largo Enrico Fermi 5, I-50125, Florence, Italy
| | - P Caselli
- Centre for Astrochemical Studies, Max-Planck-Institute for Extraterrestrial Physics, Giessenbachstrasse 1, D-85748 Garching, Germany
| | - A Vasyunin
- Centre for Astrochemical Studies, Max-Planck-Institute for Extraterrestrial Physics, Giessenbachstrasse 1, D-85748 Garching, Germany
- Laboratory of Astrochemistry, Department of Astronomy, Geodesy and Environmental Monitoring, Ural Federal University, Ekaterinburg
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19
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Calvo F, Bacchus-Montabonel MC. Size-Induced Segregation in the Stepwise Microhydration of Hydantoin and Its Role in Proton-Induced Charge Transfer. J Phys Chem A 2018; 122:1634-1642. [DOI: 10.1021/acs.jpca.7b10291] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Florent Calvo
- LiPhy, Université Grenoble 1 and CNRS UMR 5588, 140 Avenue
de la Physique, 38402 St Martin d’Hères, France
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20
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The Detection of Hot Cores and Complex Organic Molecules in the Large Magellanic Cloud. ACTA ACUST UNITED AC 2018. [DOI: 10.3847/2041-8213/aaa079] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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21
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Rivilla VM, Jiménez-Serra I, Zeng S, Martín S, Martín-Pintado J, Armijos-Abendaño J, Viti S, Aladro R, Riquelme D, Requena-Torres M, Quénard D, Fontani F, Beltrán MT. Phosphorus-bearing molecules in the Galactic Center. ACTA ACUST UNITED AC 2018. [DOI: 10.1093/mnrasl/slx208] [Citation(s) in RCA: 38] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Affiliation(s)
- V M Rivilla
- INAF/Osservatorio Astrofisico di Arcetri, Largo Enrico Fermi 5, I-50125 Florence, Italy
| | - I Jiménez-Serra
- School of Physics and Astronomy, Queen Mary University of London, Mile End Road, London E1 4NS, UK
| | - S Zeng
- School of Physics and Astronomy, Queen Mary University of London, Mile End Road, London E1 4NS, UK
| | - S Martín
- Joint ALMA Observatory, Alonso de Córdova 3107, Vitacura 763 0355, Santiago, Chile
- European Southern Observatory, Alonso de Córdova 3107, Vitacura Casilla 763 0355, Santiago, Chile
| | - J Martín-Pintado
- Centro de Astrobiología (INTA-CSIC), Ctra. de Ajalvir Km. 4, Torrejón de Ardoz, E-28850 Madrid, Spain
| | - J Armijos-Abendaño
- Observatorio Astronómico de Quito, Escuela Politécnica Nacional, Av. Gran Colombia S/N y Av. Diez de Agosto, Quito 170403, Ecuador
| | - S Viti
- Department of Physics and Astronomy, UCL, Gower St., London WC1E 6BT, UK
| | - R Aladro
- Max-Planck-Institut für Radioastronomie, Auf dem Hügel 69, D-53121 Bonn, Germany
| | - D Riquelme
- Max-Planck-Institut für Radioastronomie, Auf dem Hügel 69, D-53121 Bonn, Germany
| | - M Requena-Torres
- Space Telescope Science Institute, 3700 San Martin Drive, Baltimore, MD 21218, USA
| | - D Quénard
- School of Physics and Astronomy, Queen Mary University of London, Mile End Road, London E1 4NS, UK
| | - F Fontani
- INAF/Osservatorio Astrofisico di Arcetri, Largo Enrico Fermi 5, I-50125 Florence, Italy
| | - M T Beltrán
- INAF/Osservatorio Astrofisico di Arcetri, Largo Enrico Fermi 5, I-50125 Florence, Italy
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22
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Sruthi PK, Ramanathan N, Sarkar S, Sundararajan K. Pentavalent phosphorus as a unique phosphorus donor in POCl3 homodimer and POCl3–H2O heterodimer: matrix isolation infrared spectroscopic and computational studies. Phys Chem Chem Phys 2018; 20:22058-22075. [DOI: 10.1039/c8cp03937b] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Abstract
Phosphorus, an important element among the pnicogen group, opens up avenues for experimental and computational explorations of its interaction in a variety of compounds.
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Affiliation(s)
- P. K. Sruthi
- Materials Chemistry & Metal Fuel Cycle Group
- Homi Bhabha National Institute, Indira Gandhi Centre for Atomic Research
- Kalpakkam 603 102
- India
| | - N. Ramanathan
- Materials Chemistry & Metal Fuel Cycle Group
- Homi Bhabha National Institute, Indira Gandhi Centre for Atomic Research
- Kalpakkam 603 102
- India
| | - Shubhra Sarkar
- Materials Chemistry & Metal Fuel Cycle Group
- Homi Bhabha National Institute, Indira Gandhi Centre for Atomic Research
- Kalpakkam 603 102
- India
| | - K. Sundararajan
- Materials Chemistry & Metal Fuel Cycle Group
- Homi Bhabha National Institute, Indira Gandhi Centre for Atomic Research
- Kalpakkam 603 102
- India
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23
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Lique F, Jiménez-Serra I, Viti S, Marinakis S. Collisional excitation of interstellar PO(X2Π) by He: new ab initio potential energy surfaces and scattering calculations. Phys Chem Chem Phys 2018; 20:5407-5414. [DOI: 10.1039/c7cp05605b] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The inelastic scattering of PO (X, v = 0) has been investigated by quantum scattering calculations using a new potential energy surface.
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Affiliation(s)
- François Lique
- LOMC – UMR 6294
- CNRS-Université du Havre
- 76 063 Le Havre cedex
- France
| | - Izaskun Jiménez-Serra
- Astronomy Unit
- School of Physics and Astronomy
- Queen Mary University of London
- London E1 4NS
- UK
| | - Serena Viti
- Department of Physics and Astronomy
- University College London
- London NW1 2PS
- UK
| | - Sarantos Marinakis
- Department of Chemistry and Biochemistry
- School of Biological and Chemical Sciences
- Queen Mary University of London
- London E1 4NS
- UK
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24
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Phosphorylation, oligomerization and self-assembly in water under potential prebiotic conditions. Nat Chem 2017; 10:212-217. [PMID: 29359747 PMCID: PMC6295206 DOI: 10.1038/nchem.2878] [Citation(s) in RCA: 141] [Impact Index Per Article: 20.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2017] [Accepted: 09/22/2017] [Indexed: 12/24/2022]
Abstract
Prebiotic phosphorylation of (pre)biological substrates under aqueous conditions is a critical step in the origins of life. Previous investigations have had limited success and/or require unique environments that are incompatible with subsequent generation of the corresponding oligomers or higher-order structures. Here, we demonstrate that diamidophosphate (DAP)-a plausible prebiotic agent produced from trimetaphosphate-efficiently (amido)phosphorylates a wide variety of (pre)biological building blocks (nucleosides/tides, amino acids and lipid precursors) under aqueous (solution/paste) conditions, without the need for a condensing agent. Significantly, higher-order structures (oligonucleotides, peptides and liposomes) are formed under the same phosphorylation reaction conditions. This plausible prebiotic phosphorylation process under similar reaction conditions could enable the systems chemistry of the three classes of (pre)biologically relevant molecules and their oligomers, in a single-pot aqueous environment.
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25
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Karki M, Gibard C, Bhowmik S, Krishnamurthy R. Nitrogenous Derivatives of Phosphorus and the Origins of Life: Plausible Prebiotic Phosphorylating Agents in Water. Life (Basel) 2017; 7:E32. [PMID: 28758921 PMCID: PMC5617957 DOI: 10.3390/life7030032] [Citation(s) in RCA: 38] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2017] [Revised: 07/27/2017] [Accepted: 07/27/2017] [Indexed: 12/02/2022] Open
Abstract
Phosphorylation under plausible prebiotic conditions continues to be one of the defining issues for the role of phosphorus in the origins of life processes. In this review, we cover the reactions of alternative forms of phosphate, specifically the nitrogenous versions of phosphate (and other forms of reduced phosphorus species) from a prebiotic, synthetic organic and biochemistry perspective. The ease with which such amidophosphates or phosphoramidate derivatives phosphorylate a wide variety of substrates suggests that alternative forms of phosphate could have played a role in overcoming the "phosphorylation in water problem". We submit that serious consideration should be given to the search for primordial sources of nitrogenous versions of phosphate and other versions of phosphorus.
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Affiliation(s)
- Megha Karki
- Department of Chemistry, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037 USA.
| | - Clémentine Gibard
- Department of Chemistry, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037 USA.
| | - Subhendu Bhowmik
- Department of Chemistry, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037 USA.
| | - Ramanarayanan Krishnamurthy
- Department of Chemistry, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037 USA.
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26
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Jiménez-Serra I, Vasyunin AI, Caselli P, Marcelino N, Billot N, Viti S, Testi L, Vastel C, Lefloch B, Bachiller R. The Spatial Distribution of Complex Organic Molecules in the L1544 Pre-stellar Core. THE ASTROPHYSICAL JOURNAL. LETTERS 2016; 830:L6. [PMID: 27733899 PMCID: PMC5055100 DOI: 10.3847/2041-8205/830/1/l6] [Citation(s) in RCA: 132] [Impact Index Per Article: 16.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
The detection of complex organic molecules (COMs) toward cold sources such as pre-stellar cores (with T<10 K), has challenged our understanding of the formation processes of COMs in the interstellar medium. Recent modelling on COM chemistry at low temperatures has provided new insight into these processes predicting that COM formation depends strongly on parameters such as visual extinction and the level of CO freeze out. We report deep observations of COMs toward two positions in the L1544 pre-stellar core: the dense, highly-extinguished continuum peak with A V ≥30 mag within the inner 2700 au; and a low-density shell with average A V ~7.5-8 mag located at 4000 au from the core's center and bright in CH3OH. Our observations show that CH3O, CH3OCH3 and CH3CHO are more abundant (by factors ~2-10) toward the low-density shell than toward the continuum peak. Other COMs such as CH3OCHO, c-C3H2O, HCCCHO, CH2CHCN and HCCNC show slight enhancements (by factors ≤3) but the associated uncertainties are large. This suggests that COMs are actively formed and already present in the low-density shells of pre-stellar cores. The modelling of the chemistry of O-bearing COMs in L1544 indicates that these species are enhanced in this shell because i) CO starts freezing out onto dust grains driving an active surface chemistry; ii) the visual extinction is sufficiently high to prevent the UV photo-dissociation of COMs by the external interstellar radiation field; and iii) the density is still moderate to prevent severe depletion of COMs onto grains.
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Affiliation(s)
- Izaskun Jiménez-Serra
- Astronomy Unit, School of Physics & Astronomy, Queen Mary University of London, Mile End Road, E1 4NS, London (UK); Department of Physics & Astronomy, University College London, 132 Hampstead Road, NW1 2PS London (UK); European Southern Observatory (ESO), Karl-Schwarzschild-Str. 2, 85748 Garching (Germany)
| | - Anton I Vasyunin
- Max-Planck-Institut für extraterrestrische Physik (MPE), Gießenbachstr., 85741 Garching (Germany); Ural Federal University, Ekaterinburg, Russia
| | - Paola Caselli
- Max-Planck-Institut für extraterrestrische Physik (MPE), Gießenbachstr., 85741 Garching (Germany)
| | - Nuria Marcelino
- INAF, Osservatorio de Radioastronomia, Via P. Gobetti 101, 40129 Bologna, (Italy); Instituto de Ciencia de Materiales de Madrid, CSIC, C/ Sor Juana Inés de la Cruz 3, 28049 Cantoblanco (Spain)
| | - Nicolas Billot
- Instituto de Radioastronomía Milimétrica, Avenida Divina Pastora 7, E-18012 Granada (Spain)
| | - Serena Viti
- Department of Physics & Astronomy, University College London, 132 Hampstead Road, NW1 2PS London (UK)
| | - Leonardo Testi
- European Southern Observatory (ESO), Karl-Schwarzschild-Str. 2, 85748 Garching (Germany); INAF-Osservatorio Astrofisico di Arcetri, Largo E. Fermi 5, I-50125 Firenze, Italy
| | - Charlotte Vastel
- Université de Toulouse, UPS-OMP, IRAP, F-31400 Toulouse, France; CNRS, IRAP, 9 Av. Colonel Roche, BP 44346, F-31028 Toulouse Cedex 4, France
| | - Bertrand Lefloch
- Univ. Grenoble Alpes, IPAG, F-38000 Grenoble, France; CNRS, IPAG, F-38000 Grenoble, France
| | - Rafael Bachiller
- Observatorio Astronómico Nacional (OAN, IGN), Calle Alfonso XII 3, E-28014 Madrid, Spain
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