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Pezzella M, Mitev G, Yurchenko SN, Tennyson J, Mitrushchenkov AO. A time-independent, variational method for studying the photodissociation of triatomic molecules. Phys Chem Chem Phys 2024. [PMID: 39453498 PMCID: PMC11506224 DOI: 10.1039/d4cp02771j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2024] [Accepted: 10/14/2024] [Indexed: 10/26/2024]
Abstract
The photodissociation of molecules is becoming an increasingly important factor to consider in the evolution of exoplanets' atmospheres orbiting around UV-rich stars, as it leads to the enrichment of atmospheric complexity. A new method is developed for computing the rotationally and vibrationally resolved photodissociation spectrum of triatomic molecules. The time-independent Schrödinger equation is solved using the variational nuclear motion program EVEREST; a new code EXOCSMOOTH is employed to compute the cross-sections by applying Gaussian smoothing to a set of discrete transitions into the continuum. HCN is chosen as the test molecule, as it has been widely studied in the literature. Results are compared with the available experiments. Temperature dependence is explored for temperatures up to 2000 K.
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Affiliation(s)
- Marco Pezzella
- Department of Physics & Astronomy, University College London, London WC1E 6BT, UK.
| | - Georgi Mitev
- Department of Physics & Astronomy, University College London, London WC1E 6BT, UK.
| | - Sergei N Yurchenko
- Department of Physics & Astronomy, University College London, London WC1E 6BT, UK.
| | - Jonathan Tennyson
- Department of Physics & Astronomy, University College London, London WC1E 6BT, UK.
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2
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Rap DB, Simon A, Steenbakkers K, Schrauwen JGM, Redlich B, Brünken S. Fingerprinting fragments of fragile interstellar molecules: dissociation chemistry of pyridine and benzonitrile revealed by infrared spectroscopy and theory. Faraday Discuss 2023; 245:221-244. [PMID: 37404008 PMCID: PMC10510038 DOI: 10.1039/d3fd00015j] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2023] [Accepted: 03/22/2023] [Indexed: 07/06/2023]
Abstract
The cationic fragmentation products in the dissociative ionization of pyridine and benzonitrile have been studied by infrared action spectroscopy in a cryogenic ion trap instrument at the Free-Electron Lasers for Infrared eXperiments (FELIX) Laboratory. A comparison of the experimental vibrational fingerprints of the dominant cationic fragments with those from quantum chemical calculations revealed a diversity of molecular fragment structures. The loss of HCN/HNC is shown to be the major fragmentation channel for both pyridine and benzonitrile. Using the determined structures of the cationic fragments, potential energy surfaces have been calculated to elucidate the nature of the neutral fragment partner. In the fragmentation chemistry of pyridine, multiple non-cyclic structures are formed, whereas the fragmentation of benzonitrile dominantly leads to the formation of cyclic structures. Among the fragments are linear cyano-(di)acetylene˙+, methylene-cyclopropene˙+ and o- and m-benzyne˙+ structures, the latter possible building blocks in interstellar polycyclic aromatic hydrocarbon (PAH) formation chemistry. Molecular dynamics simulations using density functional based tight binding (MD/DFTB) were performed and used to benchmark and elucidate the different fragmentation pathways based on the experimentally determined structures. The implications of the difference in fragments observed for pyridine and benzonitrile are discussed in an astrochemical context.
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Affiliation(s)
- Daniël B Rap
- Institute for Molecules and Materials, FELIX Laboratory, Radboud University, Toernooiveld 7, 6525 ED Nijmegen, The Netherlands.
| | - Aude Simon
- Laboratoire de Chimie et Physique Quantiques (LCPQ), Fédération FeRMI, CNRS & Université Toulouse III - Paul Sabatier, 118 Route de Narbonne, 31062 Toulouse, France
| | - Kim Steenbakkers
- Institute for Molecules and Materials, FELIX Laboratory, Radboud University, Toernooiveld 7, 6525 ED Nijmegen, The Netherlands.
| | - Johanna G M Schrauwen
- Institute for Molecules and Materials, FELIX Laboratory, Radboud University, Toernooiveld 7, 6525 ED Nijmegen, The Netherlands.
| | - Britta Redlich
- Institute for Molecules and Materials, FELIX Laboratory, Radboud University, Toernooiveld 7, 6525 ED Nijmegen, The Netherlands.
| | - Sandra Brünken
- Institute for Molecules and Materials, FELIX Laboratory, Radboud University, Toernooiveld 7, 6525 ED Nijmegen, The Netherlands.
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Karabulut E. Oxygen Molecule Formation and the Puzzle of Nitrogen Dioxide and Nitrogen Oxide during Lightning Flash. J Phys Chem A 2022; 126:5363-5374. [PMID: 35920809 DOI: 10.1021/acs.jpca.2c02378] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Unlike the compounds of the natural air atmosphere, the lightning systems are primarily focused on NO(X2Π), NO2(12A'), and O(3P) concentrations that occurred newly and highly in the ground electronic structure. While the NO/NO2 concentrations ratio is about 2000 during the lightning flash, this ratio becomes about 0.8 right after the lightning flash. The reason for this decrease in the ratio is the disappearance of the high temperature that prevents the formation of NO2 (with the combination of NO and O) and of the photon energy that causes its dissociation (NO2 + hv → NO + O) right after the lightning flash. However, this study will focus on the reactions that contribute to the NO concentration, except for the combination of N and O atoms during lightning flash. To do this, it was focused on the reactive scattering states (especially the NO-exchange) of the NO + O collision and the photo-dissociation of NO2, which provide the formation of the NO molecule in the ground electronic state. This case raises important questions. To what extent do the NO-exchange reaction and the photo-dissociation of NO2 contribute to the atmospherically observed NO molecules? or how can the vibrational quantum states of the NO molecules formed by the photo-dissociation be effected on the NO + O1 collision to produce a NO1 molecule? These conditions may contribute to the concentrations of NO high during lightning flashes. Under low collision energy (between 0.1 and 0.3 eV), the NO (v = 0) population dissociated by a photon can act as reactants in the NO-exchange reactive scattering on the doublet electronic state. Since it is assumed that all of the NO2 molecules are due to NO in the lightning flash system, this is one of the reasons that makes the NO population so high during lightning flash. Therefore, in the light of considering that the lightning system supports the formation of highly vibrating molecular groups, it might also support the formation of O2 molecules. In particular, it was shown that the v = 4 quantum state of the NO molecule over the doublet state between collision energies of 0.9-1.5 eV and the v = 5 quantum state of the NO molecule over the quartet state between collision energies of 1.0-1.5 eV contribute to O2 formation.
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Affiliation(s)
- Ezman Karabulut
- Vocational School of Health Service, Bitlis Eren University, 13000 Bitlis, Turkey
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Hirai H, Horiba T, Shirai S, Kanno K, Omiya K, Nakagawa YO, Koh S. Molecular Structure Optimization Based on Electrons-Nuclei Quantum Dynamics Computation. ACS OMEGA 2022; 7:19784-19793. [PMID: 35722014 PMCID: PMC9202041 DOI: 10.1021/acsomega.2c01546] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/15/2022] [Accepted: 05/18/2022] [Indexed: 06/15/2023]
Abstract
A new concept of the molecular structure optimization method based on quantum dynamics computations is presented. Nuclei are treated as quantum mechanical particles, as are electrons, and the many-body wave function of the system is optimized by the imaginary time evolution method. The numerical demonstrations with a two-dimensional H2 + system and a H-C-N system exemplify two possible advantages of our proposed method: (1) the optimized nuclear positions can be specified with a small number of observations (quantum measurements) and (2) the global minimum structure of nuclei can be obtained without starting from any sophisticated initial structure and getting stuck in the local minima. This method is considered to be suitable for quantum computers, the development of which will realize its application as a powerful method.
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Affiliation(s)
- Hirotoshi Hirai
- Toyota
Central R&D Laboratories., Inc., 41-1, Yokomichi, Nagakute, Aichi 480-1192, Japan
| | - Takahiro Horiba
- Toyota
Central R&D Laboratories., Inc., 41-1, Yokomichi, Nagakute, Aichi 480-1192, Japan
| | - Soichi Shirai
- Toyota
Central R&D Laboratories., Inc., 41-1, Yokomichi, Nagakute, Aichi 480-1192, Japan
| | - Keita Kanno
- QunaSys
Inc., Aqua Hakusan Building 9F, 1-13-7 Hakusan, Bunkyo, Tokyo 113-0001, Japan
| | - Keita Omiya
- QunaSys
Inc., Aqua Hakusan Building 9F, 1-13-7 Hakusan, Bunkyo, Tokyo 113-0001, Japan
| | - Yuya O. Nakagawa
- QunaSys
Inc., Aqua Hakusan Building 9F, 1-13-7 Hakusan, Bunkyo, Tokyo 113-0001, Japan
| | - Sho Koh
- QunaSys
Inc., Aqua Hakusan Building 9F, 1-13-7 Hakusan, Bunkyo, Tokyo 113-0001, Japan
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Yadav M, Shivani, Ahamad A, Singh KK, Singh R, Misra A, Tandon P. ab-Initio and DFT study of HCN: Role of temperature for the formation of HCN molecule in the interstellar medium. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2021.131460] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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Abstract
Background: Many planetary nebulae retain significant quantities of molecular gas and dust despite their signature hostile radiation environments and energetic shocks. Photoionization and dissociation by extreme UV and (often) X-ray emission from their central stars drive the chemical processing of this material. Their well-defined geometries make planetary nebulae ideal testbeds for modeling the effects of radiation-driven heating and chemistry on molecular gas in photodissociation regions. Methods: We have carried out IRAM 30m/APEX 12m/ALMA radio studies of the Helix Nebula and its molecule-rich globules, exploiting the unique properties of the Helix to follow up our discovery of an anti-correlation between HNC/HCN line intensity ratio and central star UV Luminosity. Results: Analysis of HNC/HCN across the Helix Nebula reveals the line ratio increases with distance from the central star, and thus decreasing incident UV flux, indicative of the utility of the HNC/HCN ratio as a tracer of UV irradiation in photodissociation environments. However, modeling of the observed regions suggests HNC/HCN should decrease with greater distance, contrary to the observed trend. Conclusion: HNC/HCN acts as an effective tracer of UV irradiation of cold molecular gas. Further model studies are required.
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Gans B, Garcia GA, Boyé-Péronne S, Pratt ST, Guillemin JC, Aguado A, Roncero O, Loison JC. Origin band of the first photoionizing transition of hydrogen isocyanide. Phys Chem Chem Phys 2019; 21:2337-2344. [PMID: 30656348 PMCID: PMC6469576 DOI: 10.1039/c8cp07737a] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The photoelectron spectrum of the X1Σ+ → X+2Σ+ ionizing transition of hydrogen isocyanide (HNC) is measured for the first time at a fixed photon energy (13 eV). The assignment of the spectrum is supported by wave-packet calculations simulating the photoionization transition spectrum and using ab initio calculations of the potential energy surfaces for the three lowest electronic states of the cation. The photoelectron spectrum allows the retrieval of the fundamental of the CN stretching mode of the cationic ground state ([small nu, Greek, tilde]3 = 2260 ± 80 cm-1) and the adiabatic ionization energy of hydrogen isocyanide: IE(HNC) = 12.011 ± 0.010 eV, which is far below that of HCN (IE(HCN) = 13.607 eV). In light of this latter result, the thermodynamics of the HCN+/HNC+ isomers is discussed and a short summary of the values available in the literature is given.
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Affiliation(s)
- Bérenger Gans
- Institut des Sciences Moléculaires d'Orsay (ISMO), UMR 8214 CNRS, Univ. Paris-Sud, Université Paris-Saclay, F-91405 Orsay, France.
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Agúndez M, Roueff E, Le Petit F, Le Bourlot J. The chemistry of disks around T Tauri and Herbig Ae/Be stars. ASTRONOMY AND ASTROPHYSICS 2018; 616:A19. [PMID: 30185991 PMCID: PMC6120683 DOI: 10.1051/0004-6361/201732518] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
CONTEXT Infrared and (sub-)mm observations of disks around T Tauri and Herbig Ae/Be stars point to a chemical differentiation between both types of disks, with a lower detection rate of molecules in disks around hotter stars. AIMS To investigate the underlying causes of the chemical differentiation indicated by observations we perform a comparative study of the chemistry of T Tauri and Herbig Ae/Be disks. This is one of the first studies to compare chemistry in the outer regions of these two types of disks. METHODS We developed a model to compute the chemical composition of a generic protoplanetary disk, with particular attention to the photochemistry, and applied it to a T Tauri and a Herbig Ae/Be disk. We compiled cross sections and computed photodissociation and photoionization rates at each location in the disk by solving the FUV radiative transfer in a 1+1D approach using the Meudon PDR code and adopting observed stellar spectra. RESULTS The warmer disk temperatures and higher ultraviolet flux of Herbig stars compared to T Tauri stars induce some differences in the disk chemistry. In the hot inner regions, H2O, and simple organic molecules like C2H2, HCN, and CH4 are predicted to be very abundant in T Tauri disks and even more in Herbig Ae/Be disks, in contrast with infrared observations that find a much lower detection rate of water and simple organics toward disks around hotter stars. In the outer regions, the model indicates that the molecules typically observed in disks, like HCN, CN, C2H, H2CO, CS, SO, and HCO+, do not have drastic abundance differences between T Tauri and Herbig Ae disks. Some species produced under the action of photochemistry, like C2H and CN, are predicted to have slightly lower abundances around Herbig Ae stars due to a narrowing of the photochemically active layer. Observations indeed suggest that these radicals are somewhat less abundant in Herbig Ae disks, although in any case the inferred abundance differences are small, of a factor of a few at most. A clear chemical differentiation between both types of disks concerns ices. Owing to the warmer temperatures of Herbig Ae disks, one expects snowlines lying farther away from the star and a lower mass of ices compared to T Tauri disks. CONCLUSIONS The global chemical behavior of T Tauri and Herbig Ae/Be disks is quite similar. The main differences are driven by the warmer temperatures of the latter, which result in a larger reservoir or water and simple organics in the inner regions and a lower mass of ices in the outer disk.
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Affiliation(s)
- Marcelino Agúndez
- Instituto de Física Fundamental, CSIC, C/ Serrano 123, E-28006 Madrid, Spain
| | - Evelyne Roueff
- Sorbonne Université, Observatoire de Paris, Université PSL, CNRS, LERMA, F-92190 Meudon, France
| | - Franck Le Petit
- Sorbonne Université, Observatoire de Paris, Université PSL, CNRS, LERMA, F-92190 Meudon, France
| | - Jacques Le Bourlot
- Sorbonne Université, Observatoire de Paris, Université PSL, CNRS, LERMA, F-92190 Meudon, France
- Université Paris-Diderot, Sorbonne Paris-Cité, F-75013 Paris, France
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Gans B, Boyé-Péronne S, Garcia GA, Röder A, Schleier D, Halvick P, Loison JC. Unveiling the Ionization Energy of the CN Radical. J Phys Chem Lett 2017; 8:4038-4042. [PMID: 28796511 DOI: 10.1021/acs.jpclett.7b01853] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
The cyano radical is a ubiquitous molecule and was, for instance, one of the first species detected in astrophysical media such as comets or diffuse clouds. In photodissociation regions, the reaction rate of CN+ + CO → CN + CO+ is one of the critical parameters defining nitrile chemistry. The enthalpy of this charge transfer reaction is defined as the difference of ionization energies (EI) between CN and CO. Although EI(CO) is known accurately, the EI(CN) values are more dispersed and deduced indirectly from thermodynamic thresholds only, all above EI(CO), leading to the assumption that the reaction is fast even at low temperature. Using a combination of synchrotron radiation, electron/ion imaging coincidence techniques, and supporting ab initio calculations, we directly determine the first adiabatic ionization energy of CN at 13.956(7) eV, and we demonstrate that EI(CN) < EI(CO). The findings suggest a very slow reaction in the cold regions of interstellar media.
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Affiliation(s)
- Bérenger Gans
- Institut des Sciences Moléculaires d'Orsay (ISMO), UMR 8214 CNRS, Univ. Paris-Sud, Université Paris-Saclay , F-91405 Orsay, France
| | - Séverine Boyé-Péronne
- Institut des Sciences Moléculaires d'Orsay (ISMO), UMR 8214 CNRS, Univ. Paris-Sud, Université Paris-Saclay , F-91405 Orsay, France
| | - Gustavo A Garcia
- Synchrotron SOLEIL , L'Orme des Merisiers, Saint Aubin BP 48, F-91192 Gif sur Yvette Cedex, France
| | - Anja Röder
- Institute of Physical and Theoretical Chemistry, University of Würzburg , Am Hubland, D-97074 Würzburg, Germany
| | - Domenik Schleier
- Institute of Physical and Theoretical Chemistry, University of Würzburg , Am Hubland, D-97074 Würzburg, Germany
| | - Philippe Halvick
- Institut des Sciences Moléculaires, UMR 5255 CNRS-Université de Bordeaux , Bât. A12, 351 cours de la Libération, F-33405 Talence Cedex, France
| | - Jean-Christophe Loison
- Institut des Sciences Moléculaires, UMR 5255 CNRS-Université de Bordeaux , Bât. A12, 351 cours de la Libération, F-33405 Talence Cedex, France
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