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Dagallier LPMJ, Mbago FM, Couderc M, Gaudeul M, Grall A, Loup C, Wieringa JJ, Sonké B, Couvreur TLP. Phylogenomic inference of the African tribe Monodoreae (Annonaceae) and taxonomic revision of Dennettia, Uvariodendron and Uvariopsis. PHYTOKEYS 2023; 233:1-200. [PMID: 37811332 PMCID: PMC10552675 DOI: 10.3897/phytokeys.233.103096] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/07/2023] [Accepted: 08/16/2023] [Indexed: 10/10/2023]
Abstract
Monodoreae (Annonaceae) is a tribe composed of 11 genera and 90 species restricted to the tropical African rain forests. All the genera are taxonomically well circumscribed except the species rich genera Uvariodendron and Uvariopsis which lack a recent taxonomic revision. Here, we used a robust phylogenomic approach, including all the 90 currently accepted species, with several specimens per species, and based on more than 300 Annonaceae-specific nuclear genes, to infer the phylogenetic tree of the Monodoreae and test the limits between the genera and species. We recover all the genera as monophyletic, except the genus Uvariopsis for which the species Uvariopsistripetala falls outside this clade. We thus reinstate the monotypic genus Dennettia for its single species Dennettiatripetala. We also erect a new tribe, Ophrypetaleae trib. nov., to accommodate the genera Ophrypetalum and Sanrafaelia, as we recover them excluded from the Monodoreae tribe with good support. Below the genus level, the genera Isolona, Monodora, Uvariastrum, Uvariodendron and Uvariopsis show weakly supported nodes and phylogenetic conflicts, suggesting that population level processes of evolution might occur in these clades. Our results also support, at the molecular level, the description of several new species of Uvariodendron and Uvariopsis, as well as several new synonymies. Finally, we present a taxonomic revision of the genera Dennettia, Uvariodendron and Uvariopsis, which contain one, 18 and 17 species respectively. We provide a key to the 11 genera of the Monodoraeae and describe four new species to science: Uvariodendronkimbozaense Dagallier & Couvreur, sp. nov., Uvariodendronmossambicense Robson ex Dagallier & Couvreur, sp. nov., Uvariodendronpilosicarpum Dagallier & Couvreur, sp. nov. and Uvariopsisoligocarpa Dagallier & Couvreur, sp. nov., and provide provisional descriptions of three putatively new species. We also present lectotypifications and nomenclatural changes implying synonymies and new combinations (Uvariodendroncitriodorum (Le Thomas) Dagallier & Couvreur, comb. et stat. nov., Uvariodendronfuscumvar.magnificum (Verdc.) Dagallier & Couvreur, comb. et stat. nov., Uvariopsiscongensisvar.angustifolia Dagallier & Couvreur, var. nov., Uvariopsisguineensisvar.globiflora (Keay) Dagallier & Couvreur, comb. et stat. nov., and Uvariopsissolheidiivar.letestui (Pellegr.) Dagallier & Couvreur, comb. et stat. nov.).
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Affiliation(s)
- Léo-Paul M. J. Dagallier
- DIADE, Université de Montpellier, IRD, CIRAD, Montpellier, France
- Institute of Systematic Botany, The New York Botanical Garden, Bronx, New York 10458, USA
| | - Frank M. Mbago
- The Herbarium, Botany Department, Box 35060, University of Dar es Salaam, Dar es Salaam, Tanzania
| | - Marie Couderc
- DIADE, Université de Montpellier, IRD, CIRAD, Montpellier, France
| | - Myriam Gaudeul
- Institut de Systématique, Evolution, Biodiversité (ISYEB), Muséum National d’Histoire Naturelle-CNRS-SU-EPHE-UA, 57 rue Cuvier, CP 39, 75231 Paris, Cedex 05, France
| | - Aurélie Grall
- Herbaria Basel, Department of Environmental Sciences, University of Basel, Basel, Switzerland
- Herbarium, Royal Botanic Gardens, Kew, Richmond, Surrey, TW9 3AE, UK
| | - Caroline Loup
- DIADE, Université de Montpellier, IRD, CIRAD, Montpellier, France
| | - Jan J. Wieringa
- Herbier MPU, DCSPH – CC 99010, Université de Montpellier, 163 rue A. Broussonnet, F-34090 Montpellier, France
| | - Bonaventure Sonké
- Naturalis Biodiversity Center, Darwinweg 2, 2333 CR, Leiden, Netherlands
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Xue B, Ding HB, Yao G, Shao YY, Fan XJ, Tan YH. From Polyalthia to Polyalthiopsis (Annonaceae): transfer of species enlarges a previously monotypic genus. PHYTOKEYS 2020; 148:71-91. [PMID: 32536785 PMCID: PMC7270077 DOI: 10.3897/phytokeys.148.50929] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/08/2020] [Accepted: 04/06/2020] [Indexed: 05/28/2023]
Abstract
The genus Polyalthiopsis Chaowasku (Annonaceae) was a poorly known monotypic genus from Vietnam that was recently segregated from the highly polyphyletic genus Polyalthia s.l. The sister clade relationship between Polyalthiopsis and Miliusa was not well established in previous study. The phylogenetic position of two Polyalthia spp. from China, P. chinensis S.K.Wu ex P.T.Li and P. verrucipes C.Y.Wu ex P.T.Li, remains unresolved and is shown here to be phylogenetically affiliated with Polyalthiopsis. Phylogenetic analyses of six chloroplast regions (matK, ndhF, psbA-trnH, rbcL, trnL-F and ycf1; ca.7.3 kb, 60 accessions) unambiguously placed Polyalthia chinensis and P. verrucipes in the same clade with Polyalthiopsis floribunda (PP = 1, MPBS = 97%); the entire clade is sister to Miliusa with weak to strong support (PP = 1, MPBS = 54%). Polyalthia chinensis and P. verrucipes share several diagnostic characters with Polyalthiopsis floribunda, including the raised midrib on the upper surface of the leaf in vivo, conspicuous foliar glands when dried, petiole with transverse striations when dried and axillary inflorescences. The two species differ from Polyalthiopsis floribunda in having fewer flowers per inflorescence, longer linear petals and two ovules per carpel. On the basis of the combined molecular phylogenetic and morphological data, we propose two new combinations, Polyalthiopsis chinensis (S.K.Wu ex P.T.Li) B.Xue & Y.H.Tan and Polyalthiopsis verrucipes (C.Y.Wu ex P.T.Li) B.Xue & Y.H.Tan. The protologue of Polyalthia verrucipes did not include a description of the flowers, which we provide here. An updated description for the genus Polyalthiopsis and a key to species in the genus Polyalthiopsis is also provided.
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Affiliation(s)
- Bine Xue
- College of Horticulture and Landscape Architecture, Zhongkai University of Agriculture and Engineering, Guangzhou 510225, Guangdong, China
| | - Hong-Bo Ding
- Southeast Asia Biodiversity Research Institute & Center for Integrative Conservation, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Menglun, Mengla, Yunnan 666303, China
| | - Gang Yao
- College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou, China
| | - Yun-Yun Shao
- Guangdong Provincial Key Laboratory of Digital Botanical Garden, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China
| | - Xiao-Jing Fan
- South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, Guangdong, China
| | - Yun-Hong Tan
- Southeast Asia Biodiversity Research Institute & Center for Integrative Conservation, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Menglun, Mengla, Yunnan 666303, China
- Center of Conservation Biology, Core Botanical Gardens, Chinese Academy of Sciences, Menglun, Mengla, Yunnan 666303, China
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Xue B, Guo X, Landis JB, Sun M, Tang CC, Soltis PS, Soltis DE, Saunders RMK. Accelerated diversification correlated with functional traits shapes extant diversity of the early divergent angiosperm family Annonaceae. Mol Phylogenet Evol 2019; 142:106659. [PMID: 31639525 DOI: 10.1016/j.ympev.2019.106659] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2019] [Revised: 10/04/2019] [Accepted: 10/17/2019] [Indexed: 12/15/2022]
Abstract
A major goal of phylogenetic systematics is to understand both the patterns of diversification and the processes by which these patterns are formed. Few studies have focused on the ancient, species-rich Magnoliales clade and its diversification pattern. Within Magnoliales, the pantropically distributed Annonaceae are by far the most genus-rich and species-rich family-level clade, with c. 110 genera and c. 2,400 species. We investigated the diversification patterns across Annonaceae and identified traits that show varied associations with diversification rates using a time-calibrated phylogeny of 835 species (34.6% sampling) and 11,211 aligned bases from eight regions of the plastid genome (rbcL, matK, ndhF, psbA-trnH, trnL-F, atpB-rbcL, trnS-G, and ycf1). Twelve rate shifts were identified using BAMM: in Annona, Artabotrys, Asimina, Drepananthus, Duguetia, Goniothalamus, Guatteria, Uvaria, Xylopia, the tribes Miliuseae and Malmeeae, and the Desmos-Dasymaschalon-Friesodielsia-Monanthotaxis clade. TurboMEDUSA and method-of-moments estimator analyses showed largely congruent results. A positive relationship between species richness and diversification rate is revealed using PGLS. Our results show that the high species richness in Annonaceae is likely the result of recent increased diversification rather than the steady accumulation of species via the 'museum model'. We further explore the possible role of selected traits (habit, pollinator trapping, floral sex expression, pollen dispersal unit, anther septation, and seed dispersal unit) in shaping diversification patterns, based on inferences of BiSSE, MuSSE, HiSSE, and FiSSE analyses. Our results suggest that the liana habit, the presence of circadian pollinator trapping, androdioecy, and the dispersal of seeds as single-seeded monocarp fragments are closely correlated with higher diversification rates; pollen aggregation and anther septation, in contrast, are associated with lower diversification rates.
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Affiliation(s)
- B Xue
- College of Horticulture and Landscape Architecture, Zhongkai University of Agriculture and Engineering, Guangzhou 510225, Guangdong, China; Division of Ecology & Biodiversity, School of Biological Sciences, The University of Hong Kong, Pokfulam Road, Hong Kong, China; Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, Guangdong, China
| | - X Guo
- Division of Ecology & Biodiversity, School of Biological Sciences, The University of Hong Kong, Pokfulam Road, Hong Kong, China; Current address: State Key Laboratory of Agricultural Genomics, BGI-Shenzhen, Beishan Industrial Zone, Shenzhen, China
| | - J B Landis
- Department of Botany and Plant Sciences, University of California, Riverside, Riverside, CA 92521, USA
| | - M Sun
- Florida Museum of Natural History, University of Florida, Gainesville, FL 32611, USA; Department of Biology, University of Florida, Gainesville, FL 32611, USA
| | - C C Tang
- Division of Ecology & Biodiversity, School of Biological Sciences, The University of Hong Kong, Pokfulam Road, Hong Kong, China
| | - P S Soltis
- Florida Museum of Natural History, University of Florida, Gainesville, FL 32611, USA; Genetics Institute, University of Florida, Gainesville, FL 32610, USA; Biodiversity Institute, University of Florida, Gainesville, FL 32611, USA
| | - D E Soltis
- Florida Museum of Natural History, University of Florida, Gainesville, FL 32611, USA; Department of Biology, University of Florida, Gainesville, FL 32611, USA; Genetics Institute, University of Florida, Gainesville, FL 32610, USA; Biodiversity Institute, University of Florida, Gainesville, FL 32611, USA
| | - R M K Saunders
- Division of Ecology & Biodiversity, School of Biological Sciences, The University of Hong Kong, Pokfulam Road, Hong Kong, China.
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Paz WHP, de Oliveira RN, Heerdt G, Angolini CFF, S de Medeiros L, Silva VR, Santos LS, Soares MBP, Bezerra DP, Morgon NH, Almeida JRGS, da Silva FMA, Costa EV, Koolen HHF. Structure-Based Molecular Networking for the Target Discovery of Oxahomoaporphine and 8-Oxohomoaporphine Alkaloids from Duguetia surinamensis. JOURNAL OF NATURAL PRODUCTS 2019; 82:2220-2228. [PMID: 31403289 DOI: 10.1021/acs.jnatprod.9b00287] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
In addition to seven known alkaloids (2, 6-11) and 1,2,4-trimethoxybenzene (1), three isoquinoline-derived alkaloids (3-5), namely, duguetinine (3), a compound based on an unprecedented oxahomoaporphine scaffold, and two new 8-oxohomoaporphine alkaloids, duguesuramine (4) and 11-methoxyduguesuramine (5), and a new asarone-derived phenylpropanoid (10) were isolated from the bark of Duguetia surinamensis. The isolation workflow was guided by HPLC-HRESIMS/MS and molecular networking-based analyses. Twenty-four known alkaloids were dereplicated from the D. surinamensis alkaloid-rich fraction network and were assigned by manual MS/MS interpretation. Their cytotoxic potential was evaluated.
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Affiliation(s)
- Weider H P Paz
- Metabolomics and Mass Spectrometry Research Group , Amazonas State University , Manaus 690065-130 , Brazil
- Department of Chemistry , Federal University of Amazonas , Manaus 69077-000 , Brazil
| | - Rodolfo N de Oliveira
- Department of Chemistry , Federal University of Amazonas , Manaus 69077-000 , Brazil
| | - Gabriel Heerdt
- Department of Chemistry , Federal University of Minas Gerais , Belo Horizonte 31270-901 , Brazil
| | - Célio F F Angolini
- Center of Human and Natural Sciences , Federal University of ABC , 09210-580 Santo André , Brazil
| | - Lívia S de Medeiros
- Department of Chemistry , Federal University of São Paulo , 09920-540 Diadema , Brazil
| | - Valdenizia R Silva
- Gonçalo Moniz Institute , Oswaldo Cruz Foundation , Salvador 40296-710 , Brazil
| | - Luciano S Santos
- Gonçalo Moniz Institute , Oswaldo Cruz Foundation , Salvador 40296-710 , Brazil
| | - Milena B P Soares
- Gonçalo Moniz Institute , Oswaldo Cruz Foundation , Salvador 40296-710 , Brazil
| | - Daniel P Bezerra
- Gonçalo Moniz Institute , Oswaldo Cruz Foundation , Salvador 40296-710 , Brazil
| | - Nelson H Morgon
- Institute of Chemistry , University of Campinas , Campinas 13083-970 , Brazil
| | - Jackson R G S Almeida
- Center for Study and Research of Medicinal Plants , Federal University of Vale do São Francisco , Petrolina 56304-205 , Brazil
| | - Felipe M A da Silva
- Department of Chemistry , Federal University of Amazonas , Manaus 69077-000 , Brazil
| | - Emmanoel V Costa
- Department of Chemistry , Federal University of Amazonas , Manaus 69077-000 , Brazil
| | - Hector H F Koolen
- Metabolomics and Mass Spectrometry Research Group , Amazonas State University , Manaus 690065-130 , Brazil
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Maas PJ, Westra LY, Chatrou LW, Verspagen N, Rainer H, Zamora NA, Erkens RH. Twelve new and exciting Annonaceae from the Neotropics. PHYTOKEYS 2019; 126:25-69. [PMID: 31320820 PMCID: PMC6616106 DOI: 10.3897/phytokeys.126.33913] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/17/2019] [Accepted: 05/16/2019] [Indexed: 06/10/2023]
Abstract
As a result of concerted efforts of the community of Annonaceae taxonomists, increasingly detailed knowledge of the diversity of the Neotropical genera has been documented. With the exception of just two large genera, Annona and Xylopia, all Neotropical Annonaceae have been revised within the last 25 years. Subsequent to these publications, many new specimens have been collected and sent to us in Leiden for identification. These included a number that, despite the advanced state of taxonomic knowledge, proved to represent rarely collected, undescribed species. Here we describe 12 new species of Annona, Guatteria, Klarobelia, Tetrameranthus, and Xylopia. These species serve to illustrate the still underestimated diversity of the Neotropical flora, even in well studied plant groups like Annonaceae.
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Affiliation(s)
- Paul J.M. Maas
- Naturalis Biodiversity Center, section Botany, P.O. Box 9517, 2300 RA Leiden, The NetherlandsNaturalis Biodiversity CenterLeidenNetherlands
| | - Lubbert Y.Th. Westra
- Naturalis Biodiversity Center, section Botany, P.O. Box 9517, 2300 RA Leiden, The NetherlandsNaturalis Biodiversity CenterLeidenNetherlands
| | - Lars W. Chatrou
- Ghent University, Systematics and Evolutionary Botany lab., K.L. Ledeganckstraat 35, 9000 Ghent, BelgiumGhent UniversityGentBelgium
| | - Nadja Verspagen
- Maastricht Science Programme, Maastricht University, P.O.Box 616, 6200 MD, Maastricht, The NetherlandsMaastricht UniversityMaastrichtNetherlands
| | | | - Nelson A. Zamora
- Herbario Nacional de Costa Rica, Departemento de Historia Natural, Museo Nacional de Costa Rica. Apartado 749-1000, San José, Costa RicaMuseo Nacional de Costa RicaSan JoséCosta Rica
| | - Roy H.J. Erkens
- Naturalis Biodiversity Center, section Botany, P.O. Box 9517, 2300 RA Leiden, The NetherlandsNaturalis Biodiversity CenterLeidenNetherlands
- Maastricht Science Programme, Maastricht University, P.O.Box 616, 6200 MD, Maastricht, The NetherlandsMaastricht UniversityMaastrichtNetherlands
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Lopes JC, Chatrou LW, Mello-Silva R, Rudall PJ, Sajo MG. Phylogenomics and evolution of floral traits in the Neotropical tribe Malmeeae (Annonaceae). Mol Phylogenet Evol 2017; 118:379-391. [PMID: 29111476 DOI: 10.1016/j.ympev.2017.10.020] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2017] [Revised: 10/20/2017] [Accepted: 10/26/2017] [Indexed: 11/18/2022]
Abstract
Androdioecy is the rarest sexual system among plants. The majority of androdioecious species are herbaceous plants that have evolved from dioecious ancestors. Nevertheless, some woody and androdioecious plants have hermaphrodite ancestors, as in the Annonaceae, where androdioecious genera have arisen several times in different lineages. The majority of androdioecious species of Annonaceae belong to the Neotropical tribe Malmeeae. In addition to these species, Pseudoxandra spiritus-sancti was recently confirmed to be androdioecious. Here, we describe the morphology of male and bisexual flowers of Pseudoxandra spiritus-sancti, and investigate the evolution of androdioecy in Malmeeae. The phylogeny of tribe Malmeeae was reconstructed using Bayesian inference, maximum parsimony and maximum likelihood of 32 taxa, using DNA sequences of 66 molecular markers of the chloroplast genome, sequenced by next generation sequencing. The reconstruction of ancestral states was performed for characters associated with sexual systems and floral morphology. The phylogenetic analyses reconstructed three main groups in Malmeeae, (Malmea (Cremastosperma, Pseudoxandra)) sister to the rest of the tribe, and (Unonopsis (Bocageopsis, Onychopetalum)) sister to (Mosannona, Ephedranthus, Klarobelia, Oxandra, Pseudephedranthus fragrans, Pseudomalmea, Ruizodendron ovale). Hermaphroditism is plesiomorphic in the tribe, with four independent evolutions of androdieocy, which represents a synapomorphy of two groups, one that includes three genera and 14 species, the other with a single genus of seven species. Male flowers are unisexual from inception and bisexual flowers possess staminodes and functional stamens. Pseudoxandra spiritus-sancti is structurally androdioecious.
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Affiliation(s)
- J C Lopes
- Universidade de São Paulo, Instituto de Biociências, Departamento de Botânica, Rua do Matão, 277, 05508-090 São Paulo, SP, Brazil.
| | - L W Chatrou
- Wageningen University and Research, Biosystematics Group, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands
| | - R Mello-Silva
- Universidade de São Paulo, Instituto de Biociências, Departamento de Botânica, Rua do Matão, 277, 05508-090 São Paulo, SP, Brazil
| | - P J Rudall
- Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3AB, UK
| | - M G Sajo
- Universidade Estadual Paulista, Instituto de Biociências, Departamento de Botânica, Avenida 24A, 13506-900 Rio Claro, SP, Brazil
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