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Ichter J, Gargominy O, Leccia MF, Robert S, Poncet L. The first large-scale All Taxa Biodiversity Inventory in Europe: description of the Mercantour National Park ATBI datasets. Biodivers Data J 2022; 10:e85901. [PMID: 36761580 PMCID: PMC9836634 DOI: 10.3897/bdj.10.e85901] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2022] [Accepted: 08/09/2022] [Indexed: 12/24/2022] Open
Abstract
Background An All Taxa Biodiversity Inventory (ATBI) is a comprehensive inventory of all species in a given territory. In 2007, the French Parc national du Mercantour and the Italian Parco Naturale Alpi Marittime started the first and most ambitious ATBI in Europe with more than 350 specialists and dozens of technicians and data managers involved. New information The ATBI datasets from the Parc national du Mercantour in France are now publicly available. Between 2007 and 2020, 247,674 occurrences were recorded, checked and published in the INPN information system. All this information is available in open access in the GBIF web site. With 12,640 species registered, the ATBI is the most important inventory in France. This data paper provides an overview of main results and its contribution to the French National Inventory of Natural Heritage. It includes a list of 52 taxa new to science and 53 species new to France, discovered thanks to the ATBI.
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Affiliation(s)
- Jean Ichter
- Muséum national d'Histoire naturelle (correspondent), Paris, FranceMuséum national d'Histoire naturelle (correspondent)ParisFrance
| | - Olivier Gargominy
- PatriNat (OFB/MNHN/CNRS), Paris, FrancePatriNat (OFB/MNHN/CNRS)ParisFrance
| | - Marie-France Leccia
- Parc national du Mercantour, Nice, FranceParc national du MercantourNiceFrance
| | - Solène Robert
- PatriNat (OFB/MNHN/CNRS), Paris, FrancePatriNat (OFB/MNHN/CNRS)ParisFrance
| | - Laurent Poncet
- PatriNat (OFB/MNHN/CNRS), Paris, FrancePatriNat (OFB/MNHN/CNRS)ParisFrance
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Lopez-Vaamonde C, Kirichenko N, Cama A, Doorenweerd C, Godfray HCJ, Guiguet A, Gomboc S, Huemer P, Landry JF, Laštůvka A, Laštůvka Z, Lee KM, Lees DC, Mutanen M, van Nieukerken EJ, Segerer AH, Triberti P, Wieser C, Rougerie R. Evaluating DNA Barcoding for Species Identification and Discovery in European Gracillariid Moths. Front Ecol Evol 2021. [DOI: 10.3389/fevo.2021.626752] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023] Open
Abstract
Gracillariidae is the most species-rich leaf-mining moth family with over 2,000 described species worldwide. In Europe, there are 263 valid named species recognized, many of which are difficult to identify using morphology only. Here we explore the use of DNA barcodes as a tool for identification and species discovery in European gracillariids. We present a barcode library including 6,791 COI sequences representing 242 of the 263 (92%) resident species. Our results indicate high congruence between morphology and barcodes with 91.3% (221/242) of European species forming monophyletic clades that can be identified accurately using barcodes alone. The remaining 8.7% represent cases of non-monophyly making their identification uncertain using barcodes. Species discrimination based on the Barcode Index Number system (BIN) was successful for 93% of species with 7% of species sharing BINs. We discovered as many as 21 undescribed candidate species, of which six were confirmed from an integrative approach; the other 15 require additional material and study to confirm preliminary evidence. Most of these new candidate species are found in mountainous regions of Mediterranean countries, the South-Eastern Alps and the Balkans, with nine candidate species found only on islands. In addition, 13 species were classified as deep conspecific lineages, comprising a total of 27 BINs with no intraspecific morphological differences found, and no known ecological differentiation. Double-digest restriction-site associated DNA sequencing (ddRAD) analysis showed strong mitonuclear discrepancy in four out of five species studied. This discordance is not explained by Wolbachia-mediated genetic sweeps. Finally, 26 species were classified as “unassessed species splits” containing 71 BINs and some involving geographical isolation or ecological specialization that will require further study to test whether they represent new cryptic species.
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Hoare RJ, Patrick BH, Buckley TR. A new leaf-mining moth from New Zealand, Sabulopteryxbotanica sp. nov. (Lepidoptera, Gracillariidae, Gracillariinae), feeding on the rare endemic shrub Teucriumparvifolium (Lamiaceae), with a revised checklist of New Zealand Gracillariidae. Zookeys 2019; 865:39-65. [PMID: 31379443 PMCID: PMC6663935 DOI: 10.3897/zookeys.865.34265] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2019] [Accepted: 05/03/2019] [Indexed: 11/25/2022] Open
Abstract
Sabulopteryxbotanica Hoare & Patrick, sp. nov. (Lepidoptera, Gracillariidae, Gracillariinae) is described as a new species from New Zealand. It is regarded as endemic, and represents the first record of its genus from the southern hemisphere. Though diverging in some morphological features from previously described species, it is placed in genus Sabulopteryx Triberti, based on wing venation, abdominal characters, male and female genitalia and hostplant choice; this placement is supported by phylogenetic analysis based on the COI mitochondrial gene. The life history is described: the larva is an underside leaf-miner on the endemic divaricating shrub Teucriumparvifolium (Lamiaceae), and exits the mine to pupate in a cocoon in a folded leaf of the host plant. The remarkable history of the discovery and rediscovery of this moth is discussed: for many years it was only known from a single sap-feeding larva found in a leaf-mine in a pressed herbarium specimen of the host. The adult was discovered by BHP in Christchurch Botanic Gardens in 2013. Most distribution records of the moth come from a recent search for mines and cocoons on herbarium specimens of T.parvifolium. Sabulopteryxbotanica has high conservation status, and is regarded as 'Nationally Vulnerable' according to the New Zealand Department of Conservation threat classification system, based on the rarity and declining status of its host plant. However, the presence of apparently thriving populations of S.botanica on cultivated plants of T.parvifolium, especially at the type locality, Christchurch Botanic Gardens, suggests that encouraging cultivation of the plant could greatly improve the conservation status of the moth. A revised checklist of New Zealand Gracillariidae is presented, assigning all species to the currently recognised subfamilies. The Australian Macarostolaida (Meyrick, 1880) is newly recorded from New Zealand (Auckland), where it is established on Eucalyptus.
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Affiliation(s)
- Robert J.B. Hoare
- New Zealand Arthropod Collection (NZAC), Manaaki Whenua–Landcare Research, Private Bag 92170, Auckland, New ZealandNew Zealand Arthropod CollectionAucklandNew Zealand
| | - Brian H. Patrick
- Wildlands Consultants Ltd, PO Box 9276, Tower Junction, Christchurch 8149, New ZealandWildlands Consultants LtdChristchurchNew Zealand
| | - Thomas R. Buckley
- New Zealand Arthropod Collection (NZAC), Manaaki Whenua–Landcare Research, Private Bag 92170, Auckland, New ZealandNew Zealand Arthropod CollectionAucklandNew Zealand
- School of Biological Sciences, The University of Auckland, Private Bag 92019, Auckland, New ZealandThe University of AucklandAucklandNew Zealand
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Kirichenko N, Triberti P, Kobayashi S, Hirowatari T, Doorenweerd C, Ohshima I, Huang GH, Wang M, Magnoux E, Lopez-Vaamonde C. Systematics of Phyllocnistis leaf-mining moths (Lepidoptera, Gracillariidae) feeding on dogwood ( Cornus spp.) in Northeast Asia, with the description of three new species. Zookeys 2018:79-118. [PMID: 30622399 PMCID: PMC5906744 DOI: 10.3897/zookeys.736.20739] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2017] [Accepted: 12/14/2017] [Indexed: 11/27/2022] Open
Abstract
During an ongoing DNA-barcoding campaign of the leaf-mining moths that feed on woody plants in Northeast Asia, four lineages of the genus Phyllocnistis (Gracillariidae, Phyllocnistinae) were discovered on dogwood (Cornus spp): P.cornella Ermolaev, 1987 on C.controversa Hemsl. (Japan: Hokkaido) and three new species – one feeding on C.controversa, C.florida L. and C.macrophylla Wall. in Japan (Honshu, Shikoku, Kyushu), a second species on C.macrophylla in China (Yunnan) and a third on Siberian dogwood Cornusalba L. in Russia (Siberia). All these species showed differences in morphology, in the barcode region of the cytochrome c oxidase I gene and in two nuclear genes (histone H3 and 28S ribosomal RNA). No correlation was found between the deep mitochondrial splits observed and the Wolbachia infection pattern. Based on both morphological and molecular evidence, the three recently discovered lineages are described here as new species: P.indistincta Kobayashi & Triberti, sp. n. (Japan), P.saepta Kirichenko, Ohshima & Huang, sp. n. (China) and P.verae Kirichenko, Triberti & Lopez-Vaamonde, sp. n. (Russia). In addition, the authors re-describe the adult morphology of P.cornella, provide the first record of this species from Japan and highlight the diagnostic characters that allow these Cornus-feeding Phyllocnistis species to be distinguished.
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Affiliation(s)
- Natalia Kirichenko
- Sukachev Institute of Forest SB RAS, Akademgorodok 50/28, 660036, Krasnoyarsk, Russia.,Siberian Federal University, 79 Svobodny pr., 660041, Krasnoyarsk, Russia.,INRA, UR0633 Zoologie Forestière, F-45075 Orléans, France
| | - Paolo Triberti
- Museo Civico di Storia Naturale, Lungadige Porta Vittoria 9, I37129, Verona, Italy
| | - Shigeki Kobayashi
- Entomological Laboratory, Graduate School of Life and Environmental Science, Osaka Prefecture University, Sakai, Osaka, 599-8531, Japan
| | - Toshiya Hirowatari
- Entomological Laboratory, Faculty of Agriculture, Kyushu University, 6-10-1 Hakozaki, 812-8581, Fukuoka, Japan
| | - Camiel Doorenweerd
- Department of Plant and Environmental Protection Sciences, University of Hawaii, 3050 Maile Way, 96822, Honolulu, United States of America.,Naturalis Biodiversity Centre, PO Box 9557, NL-2300 RA Leiden, The Netherlands
| | - Issei Ohshima
- Department of Life and Environmental Sciences, Kyoto Prefectural University, 606-8522, Kyoto, Japan
| | - Guo-Hua Huang
- Hunan Provincial Key Laboratory for Biology and Control of Plant Diseases and Insect Pests, Hunan Agricultural University, Changsha 410128, Hunan, China
| | - Min Wang
- Department of Entomology, South China Agricultural University, Guangzhou 510642, Guangdong, China
| | | | - Carlos Lopez-Vaamonde
- INRA, UR0633 Zoologie Forestière, F-45075 Orléans, France.,Institut de Recherche sur la Biologie de l'Insecte, CNRS UMR 7261, Université François-Rabelais de Tours, UFR Sciences et Techniques, 37200 Tours, France
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