Inoculation with Indole-3-Acetic Acid-Producing Rhizospheric Rhodobacter sphaeroides KE149 Augments Growth of Adzuki Bean Plants Under Water Stress

Techniques and mechanisms of bacteria immobilization on biochar for further environmental and agricultural applications

Bacteria immobilization on biochar is a promising approach to achieve high concentration and stability of microbial cells for several applications. The present review addressed the techniques utilized for bacteria immobilization on biochar, discussing the mechanisms involved in this process, as well as the further utilization in bioremediation and agriculture. This article presents three immobilization techniques, which vary according to their procedures and conditions, including cell growth, adsorption, and adaptation. The mechanisms for cell immobilization are primarily adsorption and biofilm formation on biochar. The favorable characteristics of biochar immobilization depend on the pyrolysis methods, raw materials, and properties of biochar, such as surface area, pore size, pH, zeta potential, hydrophobicity, functional groups, and nutrients. Scanning electron microscope (SEM) and colony forming unit (CFU) are the analyses commonly carried out to verify the efficiency of bacteria immobilization. The benefits of applying biochar-immobilized bacteria include soil decontamination and quality improvement, which can improve plant growth and crop yield. Therefore, this emerging technology represents a promising solution for environmental and agricultural purposes. However, it is important to evaluate the potential adverse impacts on native microbiota by introducing exogenous microorganisms.

The effect of alfalfa cultivation on improving physicochemical properties soil microorganisms community structure of grey desert soil

Planting alfalfa in grey desert soil can have significant effects on soil nutrient levels, microbial communities, and overall soil improvement. High-throughput sequencing technology was used to explore the relationship between the rhizosphere microbial community structure of grey desert soil planted with different alfalfa varieties (Aohan, WL525HQ, Knight2, Kangsai, Victoria, and WL712), alfalfa characteristics and rhizosphere soil physicochemical properties. Alfalfa planting increased the nitrogen and organic matter in the grey desert soil, and the effects in Victoria, Kangsai, and Aohan were relatively better than those in the unplanted areas and other alfalfa areas. The Chao1 and Shannon indexes showed that the diversity and relative abundance of bacteria and fungi in Kangsai were significantly higher than those in the unplanted areas and other alfalfa areas. Redundancy analysis showed that available nitrogen and phosphorus, as well as fresh weight, significantly affected the changes in fungal and bacterial communities. Variance partitioning analysis showed that soil and alfalfa growth characteristics explained 50.04% and 51.58% of the structural changes in the bacteria and fungi, respectively. Therefore, planting alfalfa changed the community structure of bacteria and fungi, as well as the content of soil nutrients, and different varieties of alfalfa had different effects on soil improvement.

Two plant growth-promoting bacterial Bacillus strains possess different mechanisms in affecting cadmium uptake and detoxification of Solanum nigrum L

Microorganisms affect cadmium (Cd) extraction by hyperaccumulators to varying degrees, but the potential mechanism has not been completely studied. Here, two plant growth-promoting bacteria (PGPB, Bacillus paranthracis NT1 and Bacillus megaterium NCT-2) were assessed for their influence on Cd uptake by Solanum nigrum L. and their influence mechanisms. The results showed that both two strains could regulate phytohormones secretion, alleviate oxidative stress and promote S. nigrum growth when exposed to Cd (dry weight was significantly increased by 21.51% (strain NCT-2) and 21.23% (strain NT1) compared with the control, respectively). Additionally, strain NCT-2 significantly elevated the translocation factor (TF) and bioconcentration factor (BCF), and thus significantly facilitated total Cd uptake by 41.80% of S. nigrum, whereas strain NT1 significantly reduced the BCF and TF, resulting in insignificant effect on total Cd uptake of S. nigrum compared with the control. Results of qPCR illustrated that the two strains influenced the detoxification of Cd in S. nigrum by affecting the expression of antioxidant enzyme genes and gene PDR2. Moreover, the differential expression of heavy metal transport genes IRT1 and HMA may lead to the difference of Cd accumulation in S. nigrum. Principal component analysis and Pearson correlation coefficient analysis further verified the positive roles of salicylic acid and indole-3-acetic acid on Cd detoxification of S. nigrum, and the positive correlation relationship between transportation of Cd from underground to shoot, plant biomass and Cd uptake. Altogether, our results demonstrated that these two PGPB have great potential in helping plants detoxify Cd and could provide insights into the mechanism of PGPB-assisted phytoremediation of Cd-contaminated soil.

Impact of key parameters involved with plant-microbe interaction in context to global climate change

Anthropogenic activities have a critical influence on climate change that directly or indirectly impacts plant and microbial diversity on our planet. Due to climate change, there is an increase in the intensity and frequency of extreme environmental events such as temperature rise, drought, and precipitation. The increase in greenhouse gas emissions such as CO2, CH4, NOx, water vapor, increase in global temperature, and change in rainfall patterns have impacted soil–plant-microbe interactions, which poses a serious threat to food security. Microbes in the soil play an essential role in plants’ resilience to abiotic and biotic stressors. The soil microbial communities are sensitive and responsive to these stressors. Therefore, a systemic approach to climate adaptation will be needed which acknowledges the multidimensional nature of plant-microbe-environment interactions. In the last two scores of years, there has been an enhancement in the understanding of plant’s response to microbes at physiological, biochemical, and molecular levels due to the availability of techniques and tools. This review highlights some of the critical factors influencing plant-microbe interactions under stress. The association and response of microbe and plants as a result of several stresses such as temperature, salinity, metal toxicity, and greenhouse gases are also depicted. New tools to study the molecular complexity of these interactions, such as genomic and sequencing approaches, which provide researchers greater accuracy, reproducibility, and flexibility for exploring plant-microbe–environment interactions under a changing climate, are also discussed in the review, which will be helpful in the development of resistant crops/plants in present and future.

Rhizobacteria from Brazilian semiarid biome as growth promoters of soybean (Glycine max L.) under low water availability

Caatinga is the predominant biome in the Brazilian semiarid region. Its vegetation is composed by plants and microorganisms with high tolerance to drought. Microorganisms associated with plants in this biome can develop mechanisms to protect cells from water stress and desiccation. The aim of this study was to identify plant growth-promoting rhizobacteria associated with the drought-tolerant legume Mimosa artemisiana and to examine their effect on the growth of soybean (Glycine max L.) under drought condition (irrigation with 30% of field capacity). Rhizospheric soil was collected along the Caatinga (In the States of Bahia and Pernambuco) at 4 collection points, totaling sixty subsamples. Xerotolerant bacteria with plant growth-promotion characteristics were isolated in a selective culture medium for diazotrophic bacteria. Two strains of the genera Bacillus and one Paenibacillus were promising in in vitro and in vivo tests. Both were able to grow in a medium with low water availability (0.919 Aw) and could produce exopolysaccharides and indole acetic acid (up to 130 µg mL-1). In addition, they produced 1-aminocyclopropane-1-carboxylate (ACC) deaminase and formed biofilms under drought conditions. The inoculation with the isolated strains in the seedling root system mitigated the adverse effects of drought, increasing roots and shoots dry weights of soybean seedlings compared with non-inoculated.

Alleviation of salinity and metal stress using plant growth-promoting rhizobacteria isolated from semiarid Moroccan copper-mine soils

Phytoremediation is an eco-friendly method for rehabilitation of mine tailing. Some heavy metals and salt-tolerant plant growth-promoting rhizobacteria (PGPR) could be beneficial in alleviating soil salinity and heavy metal stress during plant growth. The aim of this work is to select PGPR that could be used in phytoremediation process. Twenty-nine rhizobacteria are examined for their ability to grow at increasing concentrations of NaCl, Zn, Pb, Cu, and Cd. The results showed that seventeen rhizobacteria displayed high salinity and metal tolerance up to 100 g L^-1 of NaCl, 5 mM of Cd, 9 mM of Pb, 10 mM of Zn, and 6 mM of Cu. Moreover, almost all tested bacteria maintained their PGP traits under 10% of NaCl and multi-metal stress. Based on seedling bioassay under metallic and salt stress, using Peganum harmala L. and Lactuca sativa L., beneficial effects of seed inoculation with bacterial consortia (Mesorhizobium tamadayense, Enterobacter xiangfangensis, Pseudomonas azotifigens, and Streptomyces caelestis) have been observed in terms of root and shoot elongation. Our results show that the stress-tolerant consortium used has a great potential to sustain plants establishment in heavily disturbed soils.

From Lab to Farm: Elucidating the Beneficial Roles of Photosynthetic Bacteria in Sustainable Agriculture

Photosynthetic bacteria (PSB) possess versatile metabolic abilities and are widely applied in environmental bioremediation, bioenergy production and agriculture. In this review, we summarize examples of purple non-sulfur bacteria (PNSB) through biofertilization, biostimulation and biocontrol mechanisms to promote plant growth. They include improvement of nutrient acquisition, production of phytohormones, induction of immune system responses, interaction with resident microbial community. It has also been reported that PNSB can produce an endogenous 5-aminolevulinic acid (5-ALA) to alleviate abiotic stress in plants. Under biotic stress, these bacteria can trigger induced systemic resistance (ISR) of plants against pathogens. The nutrient elements in soil are significantly increased by PNSB inoculation, thus improving fertility. We share experiences of researching and developing an elite PNSB inoculant (Rhodopseudomonas palustris PS3), including strategies for screening and verifying beneficial bacteria as well as the establishment of optimal fermentation and formulation processes for commercialization. The effectiveness of PS3 inoculants for various crops under field conditions, including conventional and organic farming, is presented. We also discuss the underlying plant growth-promoting mechanisms of this bacterium from both microbial and plant viewpoints. This review improves our understanding of the application of PNSB in sustainable crop production and could inspire the development of diverse inoculants to overcome the changes in agricultural environments created by climate change.

Drought Tolerant Enterobacter sp./Leclercia adecarboxylata Secretes Indole-3-acetic Acid and Other Biomolecules and Enhances the Biological Attributes of Vigna radiata (L.) R. Wilczek in Water Deficit Conditions

Drought or water stress is a limiting factor that hampers the growth and yield of edible crops. Drought-tolerant plant growth-promoting rhizobacteria (PGPR) can mitigate water stress in crops by synthesizing multiple bioactive molecules. Here, strain PAB19 recovered from rhizospheric soil was biochemically and molecularly characterized, and identified as Enterobacter sp./Leclercia adecarboxylata (MT672579.1). Strain PAB19 tolerated an exceptionally high level of drought (18% PEG-6000) and produced indole-3-acetic acid (176.2 ± 5.6 µg mL-1), ACC deaminase (56.6 ± 5.0 µg mL-1), salicylic acid (42.5 ± 3.0 µg mL-1), 2,3-dihydroxy benzoic acid (DHBA) (44.3 ± 2.3 µg mL-1), exopolysaccharide (204 ± 14.7 µg mL-1), alginate (82.3 ± 6.5 µg mL-1), and solubilized tricalcium phosphate (98.3 ± 3.5 µg mL-1), in the presence of 15% polyethylene glycol. Furthermore, strain PAB19 alleviated water stress and significantly (p ≤ 0.05) improved the overall growth and biochemical attributes of Vigna radiata (L.) R. Wilczek. For instance, at 2% PEG stress, PAB19 inoculation maximally increased germination, root dry biomass, leaf carotenoid content, nodule biomass, leghaemoglobin (LHb) content, leaf water potential (ΨL), membrane stability index (MSI), and pod yield by 10%, 7%, 14%, 38%, 9%, 17%, 11%, and 11%, respectively, over un-inoculated plants. Additionally, PAB19 inoculation reduced two stressor metabolites, proline and malondialdehyde, and antioxidant enzymes (POD, SOD, CAT, and GR) levels in V. radiata foliage in water stress conditions. Following inoculation of strain PAB19 with 15% PEG in soil, stomatal conductance, intercellular CO2 concentration, transpiration rate, water vapor deficit, intrinsic water use efficiency, and photosynthetic rate were significantly improved by 12%, 8%, 42%, 10%, 9% and 16%, respectively. Rhizospheric CFU counts of PAB19 were 2.33 and 2.11 log CFU g-1 after treatment with 15% PEG solution and 8.46 and 6.67 log CFU g-1 for untreated controls at 40 and 80 DAS, respectively. Conclusively, this study suggests the potential of Enterobacter sp./L. adecarboxylata PAB19 to alleviate water stress by improving the biological and biochemical features and of V. radiata under water-deficit conditions.

Influence of the Rhizobacterium Rhodobacter sphaeroides KE149 and Biochar on Waterlogging Stress Tolerance in Glycine max L

In the context of the current climate change and increasing population scenarios, waterlogging stress in plants represents a global threat to sustainable agriculture production. Plant-growth-promoting rhizobacteria and biochar have been widely reported to mitigate the effects of several abiotic stresses. Hence, in the present study, we examined the effect of the rhizobacterium Rhodobacter sphaeroides KE149 and biochar on soybean plants subjected to sufficient water supply and waterlogging stress conditions. Our results revealed that KE149 and biochar inoculation significantly improved plant morphological attributes, such as root length, shoot length, and fresh biomass. The biochemical analysis results showed that the two treatments determined a significant drop in the levels of endogenous phytohormones (such as abscisic acid) under normal conditions, which were considerably enhanced under waterlogging stress. However, the jasmonic acid content increased with the application of biochar and KE149 under normal conditions, and it considerably decreased under waterlogging stress. Moreover, proline, methionine, and aspartic acid were significantly increased, whereas the phenolic and flavonoid contents were reduced with the application of the two treatments under waterlogging stress. These results suggest that the application of KE149 and biochar can be a safe biological tool with which to improve the physiology and productivity of soybean plants exposed to waterlogging stress.

Rhizospheric Bacillus spp. Rescues Plant Growth Under Salinity Stress via Regulating Gene Expression, Endogenous Hormones, and Antioxidant System of Oryza sativa L

Salinity has drastically reduced crop yields and harmed the global agricultural industry. We isolated 55 bacterial strains from plants inhabiting the coastal sand dunes of Pohang, Korea. A screening bioassay showed that 14 of the bacterial isolates secreted indole-3-acetic acid (IAA), 12 isolates were capable of exopolysaccharide (EPS) production and phosphate solubilization, and 10 isolates secreted siderophores. Based on our preliminary screening, 11 bacterial isolates were tested for salinity tolerance on Luria-Bertani (LB) media supplemented with 0, 50, 100, and 150 mM of NaCl. Three bacterial isolates, ALT11, ALT12, and ALT30, had the best tolerance against elevated NaCl levels and were selected for further study. Inoculation of the selected bacterial isolates significantly enhanced rice growth attributes, viz., shoot length (22.8-42.2%), root length (28.18-59%), fresh biomass (44.7-66.41%), dry biomass (85-90%), chlorophyll content (18.30-36.15%), Chl a (29.02-60.87%), Chl b (30.86-64.51%), and carotenoid content (26.86-70%), under elevated salt stress of 70 and 140 mM. Furthermore, a decrease in the endogenous abscisic acid (ABA) content (27.9-23%) and endogenous salicylic acid (SA) levels (11.70-69.19%) was observed in inoculated plants. Antioxidant analysis revealed an increase in total protein (TP) levels (42.57-68.26%), whereas it revealed a decrease in polyphenol peroxidase (PPO) (24.63-34.57%), glutathione (GSH) (25.53-24.91%), SOA (13.88-18.67%), and LPO levels (15.96-26.06%) of bacterial-inoculated plants. Moreover, an increase in catalase (CAT) (26-33.04%), peroxidase (POD) (59.55-78%), superoxide dismutase (SOD) (13.58-27.77%), and ascorbic peroxidase (APX) (5.76-22.74%) activity was observed. Additionally, inductively coupled plasma mass spectrometry (ICP-MS) analysis showed a decline in Na⁺ content (24.11 and 30.60%) and an increase in K⁺ (23.14 and 15.45%) and Mg⁺ (2.82 and 18.74%) under elevated salt stress. OsNHX1 gene expression was downregulated (0.3 and 4.1-folds), whereas the gene expression of OsPIN1A, OsCATA, and OsAPX1 was upregulated by a 7-17-fold in bacterial-inoculated rice plants. It was concluded that the selected bacterial isolates, ALT11, ALT12, and ALT30, mitigated the adverse effects of salt stress on rice growth and can be used as climate smart agricultural tools in ecofriendly agricultural practices.

The Halotolerant Rhizobacterium-Pseudomonas koreensis MU2 Enhances Inorganic Silicon and Phosphorus Use Efficiency and Augments Salt Stress Tolerance in Soybean (Glycine max L.)

Optimizing nutrient usage in plants is vital for a sustainable yield under biotic and abiotic stresses. Since silicon and phosphorus are considered key elements for plant growth, this study assessed the efficient supplementation strategy of silicon and phosphorus in soybean plants under salt stress through inoculation using the rhizospheric strain—Pseudomonas koreensis MU2. The screening analysis of MU2 showed its high salt-tolerant potential, which solubilizes both silicate and phosphate. The isolate, MU2 produced gibberellic acid (GA₁, GA₃) and organic acids (malic acid, citric acid, acetic acid, and tartaric acid) in pure culture under both normal and salt-stressed conditions. The combined application of MU2, silicon, and phosphorus significantly improved silicon and phosphorus uptake, reduced Na⁺ ion influx by 70%, and enhanced K⁺ uptake by 46% in the shoots of soybean plants grown under salt-stress conditions. MU2 inoculation upregulated the salt-resistant genes GmST1, GmSALT3, and GmAKT2, which significantly reduced the endogenous hormones abscisic acid and jasmonic acid while, it enhanced the salicylic acid content of soybean. In addition, MU2 inoculation strengthened the host’s antioxidant system through the reduction of lipid peroxidation and proline while, it enhanced the reduced glutathione content. Moreover, MU2 inoculation promoted root and shoot length, plant biomass, and the chlorophyll content of soybean plants. These findings suggest that MU2 could be a potential biofertilizer catalyst for the amplification of the use efficiency of silicon and phosphorus fertilizers to mitigate salt stress.