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Shi X, Zhang Y, Chen S, Du X, Zhang P, Duan X, Fang H, Liu S. Differential gene expression and immune cell infiltration in maedi-visna virus-infected lung tissues. BMC Genomics 2024; 25:534. [PMID: 38816794 PMCID: PMC11141007 DOI: 10.1186/s12864-024-10448-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2024] [Accepted: 05/23/2024] [Indexed: 06/01/2024] Open
Abstract
BACKGROUND Maedi-visna virus (MVV) is a lentivirus that infects monocyte/macrophage lineage cells in sheep, goats, and wild ruminants and causes pneumonia, mastitis, arthritis, and encephalitis. The immune response to MVV infection is complex, and a complete understanding of its infection and pathogenesis is lacking. This study investigated the in vivo transcriptomic patterns of lung tissues in sheep exposed to MVV using the RNA sequencing technology. RESULT The results indicated that 2,739 genes were significantly differentially expressed, with 1,643 downregulated genes and 1,096 upregulated genes. Many variables that could be unique to MVV infections were discovered. Gene Ontology analysis revealed that a significant proportion of genes was enriched in terms directly related to the immune system and biological responses to viral infections. Kyoto Encyclopedia of Genes and Genomes analysis revealed that the most enriched pathways were related to virus-host cell interactions and inflammatory responses. Numerous immune-related genes, including those encoding several cytokines and interferon regulatory factors, were identified in the protein-protein interaction network of differentially expressed genes (DEGs). The expression of DEGs was evaluated using real-time polymerase chain reaction and western blot analysis. CXCL13, CXCL6, CXCL11, CCR1, CXCL8, CXCL9, CXCL10, TNFSF8, TNFRSF8, IL7R, IFN-γ, CCL2, and MMP9 were upregulated. Immunohistochemical analysis was performed to identify the types of immune cells that infiltrated MVV-infected tissues. B cells, CD4+ and CD8+ T cells, and macrophages were the most prevalent immune cells correlated with MVV infection in the lungs. CONCLUSION Overall, the findings of this study provide a comprehensive understanding of the in vivo host response to MVV infection and offer new perspectives on the gene regulatory networks that underlie pathogenesis in natural hosts.
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Affiliation(s)
- Xiaona Shi
- College of Veterinary Medicine, Inner Mongolia Agricultural University, Zhao Wu Da Road No. 306, Hohhot, 010018, China
- Inner Mongolia Key Laboratory of Basic Veterinary Science, Hohhot, 010018, China
- Key Laboratory of Clinical Diagnosis and Treatment Technology in Animal Disease, Ministry of Agriculture, Hohhot, 010018, China
| | - Yufei Zhang
- College of Veterinary Medicine, Inner Mongolia Agricultural University, Zhao Wu Da Road No. 306, Hohhot, 010018, China
- Inner Mongolia Key Laboratory of Basic Veterinary Science, Hohhot, 010018, China
- Key Laboratory of Clinical Diagnosis and Treatment Technology in Animal Disease, Ministry of Agriculture, Hohhot, 010018, China
| | - Sixu Chen
- College of Veterinary Medicine, Inner Mongolia Agricultural University, Zhao Wu Da Road No. 306, Hohhot, 010018, China
- Inner Mongolia Key Laboratory of Basic Veterinary Science, Hohhot, 010018, China
- Key Laboratory of Clinical Diagnosis and Treatment Technology in Animal Disease, Ministry of Agriculture, Hohhot, 010018, China
| | - Xiaoyue Du
- College of Veterinary Medicine, Inner Mongolia Agricultural University, Zhao Wu Da Road No. 306, Hohhot, 010018, China
- Inner Mongolia Key Laboratory of Basic Veterinary Science, Hohhot, 010018, China
- Key Laboratory of Clinical Diagnosis and Treatment Technology in Animal Disease, Ministry of Agriculture, Hohhot, 010018, China
| | - Pei Zhang
- College of Veterinary Medicine, Inner Mongolia Agricultural University, Zhao Wu Da Road No. 306, Hohhot, 010018, China
- Inner Mongolia Key Laboratory of Basic Veterinary Science, Hohhot, 010018, China
- Key Laboratory of Clinical Diagnosis and Treatment Technology in Animal Disease, Ministry of Agriculture, Hohhot, 010018, China
| | - Xujie Duan
- College of Veterinary Medicine, Inner Mongolia Agricultural University, Zhao Wu Da Road No. 306, Hohhot, 010018, China
- Inner Mongolia Key Laboratory of Basic Veterinary Science, Hohhot, 010018, China
- Key Laboratory of Clinical Diagnosis and Treatment Technology in Animal Disease, Ministry of Agriculture, Hohhot, 010018, China
| | - Hui Fang
- College of Veterinary Medicine, Inner Mongolia Agricultural University, Zhao Wu Da Road No. 306, Hohhot, 010018, China
- Inner Mongolia Key Laboratory of Basic Veterinary Science, Hohhot, 010018, China
- Key Laboratory of Clinical Diagnosis and Treatment Technology in Animal Disease, Ministry of Agriculture, Hohhot, 010018, China
| | - Shuying Liu
- College of Veterinary Medicine, Inner Mongolia Agricultural University, Zhao Wu Da Road No. 306, Hohhot, 010018, China.
- Inner Mongolia Key Laboratory of Basic Veterinary Science, Hohhot, 010018, China.
- Key Laboratory of Clinical Diagnosis and Treatment Technology in Animal Disease, Ministry of Agriculture, Hohhot, 010018, China.
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Kalogianni AI, Bouzalas I, Marka S, Zografaki ME, Mavrikou S, Gelasakis AI. Genetic Characterization of Small Ruminant Lentiviruses Isolated from Dairy Sheep in Greece. Viruses 2024; 16:547. [PMID: 38675890 PMCID: PMC11053789 DOI: 10.3390/v16040547] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2024] [Revised: 03/15/2024] [Accepted: 03/29/2024] [Indexed: 04/28/2024] Open
Abstract
The high genetic heterogeneity of small ruminant lentiviruses (SRLV) renders the genetic characterization of the circulating strains crucial for the epidemiological investigation and the designation of effective diagnostic tools. In Greece, research data regarding the genetic diversity of the circulating SRLV strains is scarce, hindering the implementation of efficient surveillance and control programs. The objective of the study was to genetically characterize SRLV strains isolated from intensive dairy sheep farms in Greece and evaluate the variability of the immunodominant regions of the capsid protein. For this reason, a total of 12 SRLV-infected animals from four intensive dairy sheep farms with purebred Chios and Lacaune ewes were used for the amplification and sequencing of an 800 bp gag-pol fragment. The phylogenetic analyses revealed a breed-related circulation of strains; Chios ewes were infected with strains belonging exclusively to a separate group of genotype A, whereas strains belonging to subtype B2 were isolated from Lacaune ewes. Immunodominant epitopes of capsid protein were quite conserved among the strains of the same genotype, except for the Major Homology Region which showed some unique mutations with potential effects on viral evolution. The present study contributes to the extension of the current knowledge regarding the genetic diversity of SRLV strains circulating in sheep in Greece. However, broader genetic characterization studies are warranted for the exploration of possible recombinant events and the more comprehensive classification of the circulating strains.
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Affiliation(s)
- Aphrodite I. Kalogianni
- Laboratory of Anatomy and Physiology of Farm Animals, Department of Animal Science, School of Animal Biosciences, Agricultural University of Athens (AUA), Iera Odos 75 Str., 11855 Athens, Greece;
| | - Ilias Bouzalas
- Veterinary Research Institute, Hellenic Agricultural Organization-DEMETER, Campus of Thermi, 57001 Thessaloniki, Greece;
| | - Sofia Marka
- Laboratory of Cell Technology, Department of Biotechnology, School of Applied Biology and Biotechnology, Agricultural University of Athens (AUA), EU-CONEXUS European University, 11855 Athens, Greece; (S.M.); (M.-E.Z.); (S.M.)
| | - Maria-Eleftheria Zografaki
- Laboratory of Cell Technology, Department of Biotechnology, School of Applied Biology and Biotechnology, Agricultural University of Athens (AUA), EU-CONEXUS European University, 11855 Athens, Greece; (S.M.); (M.-E.Z.); (S.M.)
| | - Sofia Mavrikou
- Laboratory of Cell Technology, Department of Biotechnology, School of Applied Biology and Biotechnology, Agricultural University of Athens (AUA), EU-CONEXUS European University, 11855 Athens, Greece; (S.M.); (M.-E.Z.); (S.M.)
| | - Athanasios I. Gelasakis
- Laboratory of Anatomy and Physiology of Farm Animals, Department of Animal Science, School of Animal Biosciences, Agricultural University of Athens (AUA), Iera Odos 75 Str., 11855 Athens, Greece;
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Olech M. The genetic variability of small-ruminant lentiviruses and its impact on tropism, the development of diagnostic tests and vaccines and the effectiveness of control programmes. J Vet Res 2023; 67:479-502. [PMID: 38130459 PMCID: PMC10730557 DOI: 10.2478/jvetres-2023-0064] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2023] [Accepted: 11/13/2023] [Indexed: 12/23/2023] Open
Abstract
Introduction Maedi-visna virus and caprine arthritis encephalitis virus are two closely related lentiviruses which cause multisystemic, progressive and persistent infection in goats and sheep. Because these viruses frequently cross the species barrier, they are considered to be one genetic group called small-ruminant lentiviruses (SRLV). They have in vivo tropism mainly for monocytes and macrophages and organ tropism with unknown mechanisms. Typical clinical signs are pneumonia in sheep, arthritis in goats, and mastitis in both species. Infection with SRLV cannot currently be treated or prevented, and control programmes are the only approaches to avoiding its spread. These programmes rely mainly on annual serological testing and elimination of positive animals. However, the high genetic and antigenic variability of SRLV complicate their early and definitive diagnosis. The objective of this review is to summarise the current knowledge of SRLV genetic variation and its implications for tropism, the development of diagnostic tests and vaccines and the effectiveness of control and eradication programmes. Material and Methods Subject literature was selected from the PubMed and the Google Scholar databases. Results The high genetic diversity of SRLV affects the performance of diagnostic tools and therefore control programmes. For the early and definitive diagnosis of SRLV infection, a combination of serological and molecular tests is suggested. Testing by PCR can also be considered for sub-yearling animals. There are still significant gaps in our knowledge of the epidemiology, immunology and biology of SRLV and their impact on animal production and welfare. Conclusion This information may aid selection of the most effective SRLV spread reduction measures.
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Affiliation(s)
- Monika Olech
- Department of Pathology, National Veterinary Research Institute, 24-100Puławy, Poland
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Carrozza ML, Niewiadomska AM, Mazzei M, Abi-Said MR, Hué S, Hughes J, Gatseva A, Gifford RJ. Emergence and pandemic spread of small ruminant lentiviruses. Virus Evol 2023; 9:vead005. [PMID: 36793939 PMCID: PMC9924038 DOI: 10.1093/ve/vead005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2022] [Revised: 01/02/2023] [Accepted: 01/17/2023] [Indexed: 01/19/2023] Open
Abstract
Small ruminant lentiviruses (SRLVs) cause chronic, persistent infections in populations of domestic sheep (Ovis aries) and goats (Capra hircus) worldwide. The vast majority of SRLV infections involve two genotypes (A and B) that spread in association with the emergence of global livestock trade. However, SRLVs have likely been present in Eurasian ruminant populations since at least the early Neolithic period. Here, we use phylogenetic and phylogeographic approaches to reconstruct the origin of pandemic SRLV strains and infer their historical pattern of global spread. We constructed an open computational resource ('Lentivirus-GLUE') via which an up-to-date database of published SRLV sequences, multiple sequence alignments (MSAs), and sequence-associated metadata can be maintained. We used data collated in Lentivirus-GLUE to perform a comprehensive phylogenetic investigation of global SRLV diversity. Phylogenies reconstructed from genome-length alignments reveal that the deep divisions in the SRLV phylogeny are consistent with an ancient split into Eastern (A-like) and Western (B-like) lineages as agricultural systems disseminated out of domestication centres during the Neolithic period. These findings are also consistent with historical and phylogeographic evidence linking the early 20th century emergence of SRLV-A to the international export of Central Asian Karakul sheep. Investigating the global diversity of SRLVs can help reveal how anthropogenic factors have impacted the ecology and evolution of livestock diseases. The open resources generated in our study can expedite these studies and can also serve more broadly to facilitate the use of genomic data in SRLV diagnostics and research.
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Affiliation(s)
| | - Anna-Maria Niewiadomska
- Virus Pathogen Resource, J. Craig Venter Institute, 9605 Medical Center Drive, Suite 150, Rockville, MD 20850, USA
| | | | - Mounir R Abi-Said
- Faculty of Sciences II, Lebanese University, Campus Pierre Gemayel Fanar, Jdeidet 90656, Lebanon
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