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Dabiré Y, Somda NS, Somda MK, Compaoré CB, Mogmenga I, Ezeogu LI, Traoré AS, Ugwuanyi JO, Dicko MH. Assessment of probiotic and technological properties of Bacillus spp. isolated from Burkinabe Soumbala. BMC Microbiol 2022; 22:228. [PMID: 36175837 PMCID: PMC9523936 DOI: 10.1186/s12866-022-02642-7] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2022] [Accepted: 09/15/2022] [Indexed: 01/01/2023] Open
Abstract
BACKGROUND Soumbala is a highly loved alkaline traditional fermented food condiment in Burkina Faso. It harbors various microbiota dominated by fermentative Bacillus spp. as functional microorganism with little confirmed health-promoting properties. METHODS The present study aimed to evaluate six Bacillus strains previously isolated and identified from soumbala. These strains were selected as presumptively safe bacteria for probiotic and technological characteristics. These strains were assessed for in vitro probiotic criteria (tolerance to acidic pH, gastric juice, 0.3% (m/v) bile salts, intestinal juice and 0.4% (w/v) phenol, cell surface hydrophobicity, auto-aggregation capacity, antimicrobial activity against foodborne pathogens, antibiotic susceptibility and biofilm production) and technological properties, including protease, amylase, lipase, and tannase activity, as well as poly-γ-glutamic acid (PGA) production and thermo-tolerance. RESULTS All tested Bacillus strains (B54, F20, F24, F21, F26 and F44) presented variable relevant probiotic properties (good tolerance to pH 2 and pH 4, gastric juice, bile salts, intestinal juice and phenol), with marked differences in hydrophobicity and auto-aggregation capacity ranging from 73.62-94.71% and 49.35-92.30%, respectively. They exhibited a broad spectrum of activity against foodborne pathogens depending on target pathogen, with the highest activity exhibited by strain F20 (29.52 mm) against B. cereus 39 (p < 0.001). They also showed good biofilm production as well as variable hydrolytic enzyme activities, including protease (43.00-60.67 mm), amylase (22.59-49.55 mm), lipase (20.02-24.57 mm), and tannase (0-10.67 mm). All tested Bacillus strains tolerated temperature up to 50 °C, while only strains F26 and F44 showed the best PGA production. CONCLUSION Overall, the tested cultures exhibiting potential probiotic and technological characteristics; particularly B. cereus F20, B. benzoevorans F21, B. cabrialessi F26, and B. tequilensis F44 could be a source of probiotic-starters of commercial interest in the production of high-quality soumbala.
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Affiliation(s)
- Yérobessor Dabiré
- Laboratoire de Biochimie, Biotechnologie, Technologie Alimentaire et Nutrition (LABIOTAN), Département de Biochimie Microbiologie, Ecole Doctorale Sciences et Technologies (EDST), Université Joseph KI-ZERBO, 03 P.B. 7031 Ouagadougou 03, Burkina Faso ,grid.10757.340000 0001 2108 8257Department of Microbiology, Faculty of Biological Sciences, University of Nigeria Nsukka (UNN), Enugu state, 410001 Nigeria
| | - Namwin Siourimè Somda
- grid.433132.40000 0001 2165 6445Département Technologie Alimentaire (DTA), Centre National de Recherche Scientifique et Technologique (CNRST) / Institut de Recherche en Sciences Appliquées et Technologies (IRSAT) / Direction Régional de L’Ouest, 03 B.P.2393 Bobo - Dioulasso 03, Burkina Faso
| | - Marius K. Somda
- Laboratoire de Biochimie, Biotechnologie, Technologie Alimentaire et Nutrition (LABIOTAN), Département de Biochimie Microbiologie, Ecole Doctorale Sciences et Technologies (EDST), Université Joseph KI-ZERBO, 03 P.B. 7031 Ouagadougou 03, Burkina Faso ,Laboratoire de Microbiologie et de Biotechnologie Microbienne (LAMBM), Département de Biochimie-Microbiologie, Ecole Doctorale Sciences et Technologies (EDST), Université Joseph KI-ZERBO, 03 P.B. 7031 Ouagadougou 03, Burkina Faso
| | - Clarisse B. Compaoré
- grid.433132.40000 0001 2165 6445Département Technologie Alimentaire (DTA), Centre National de Recherche Scientifique et Technologique (CNRST) / Institut de Recherche en Sciences Appliquées et Technologies (IRSAT), 03 B.P. 7047 Ouagadougou 03, Burkina Faso
| | - Iliassou Mogmenga
- Laboratoire de Microbiologie et de Biotechnologie Microbienne (LAMBM), Département de Biochimie-Microbiologie, Ecole Doctorale Sciences et Technologies (EDST), Université Joseph KI-ZERBO, 03 P.B. 7031 Ouagadougou 03, Burkina Faso
| | - Lewis I. Ezeogu
- grid.10757.340000 0001 2108 8257Department of Microbiology, Faculty of Biological Sciences, University of Nigeria Nsukka (UNN), Enugu state, 410001 Nigeria
| | - Alfred S. Traoré
- Laboratoire de Biochimie, Biotechnologie, Technologie Alimentaire et Nutrition (LABIOTAN), Département de Biochimie Microbiologie, Ecole Doctorale Sciences et Technologies (EDST), Université Joseph KI-ZERBO, 03 P.B. 7031 Ouagadougou 03, Burkina Faso ,Laboratoire de Microbiologie et de Biotechnologie Microbienne (LAMBM), Département de Biochimie-Microbiologie, Ecole Doctorale Sciences et Technologies (EDST), Université Joseph KI-ZERBO, 03 P.B. 7031 Ouagadougou 03, Burkina Faso ,grid.508517.eLaboratoire des Sciences Biologiques Appliquées, Unité de Formation et de Recherche en Sciences et Technologies (UFR-ST), Université Aube Nouvelle, 01 P.B. 234 Bobo-Dioulasso 01, Burkina Faso
| | - Jerry O. Ugwuanyi
- grid.10757.340000 0001 2108 8257Department of Microbiology, Faculty of Biological Sciences, University of Nigeria Nsukka (UNN), Enugu state, 410001 Nigeria
| | - Mamoudou H. Dicko
- Laboratoire de Biochimie, Biotechnologie, Technologie Alimentaire et Nutrition (LABIOTAN), Département de Biochimie Microbiologie, Ecole Doctorale Sciences et Technologies (EDST), Université Joseph KI-ZERBO, 03 P.B. 7031 Ouagadougou 03, Burkina Faso
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Zhao L, Liu Q, Xu FH, Liu H, Zhang J, Liu F, Wang G. Identification and analysis of Rap-Phr system in Bacillus cereus 0-9. FEMS Microbiol Lett 2022; 369:6549557. [PMID: 35293995 DOI: 10.1093/femsle/fnac026] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2021] [Revised: 02/15/2022] [Accepted: 03/14/2022] [Indexed: 11/13/2022] Open
Abstract
In this study, eight rap-related genes were found in the Bacillus cereus 0-9 genome; five rap genes were located on chromosomes and three on large plasmids. Five Rap proteins in B. cereus 0-9 were annotated as 'tetratricopeptide repeat proteins'. SMART Server analysis showed that the eight Rap proteins had typical tetrapeptide repeat sequence (TPR) domains. Biofilm assays and crystal violet staining showed that overexpression of the rapp1 and rap5 genes affected the biofilm formation of B. cereus 0-9, and the activities of Rapp1 and Rap5 proteins were inhibited by their corresponding cognate Phr, suggesting that the Rap-Phr quorum sensing (QS) system might also exist in the B. cereus 0-9 strain. In addition, overexpression of rap1 genes inhibited in the extracellular amylase decomposition capacity of B. cereus 0-9. The results of the sporulation assay indicated that overexpression of the eight rap genes inhibited the spore formation of B. cereus 0-9 to varying degrees. These results provide a reference for research on the regulation of the Rap-Phr QS system in B. cereus.
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Affiliation(s)
- Linlin Zhao
- Institute of Microbial Engineering, Laboratory of Bioresource and Applied Microbiology, School of Life Sciences, Henan University, Kaifeng, China
| | - Qing Liu
- Institute of Microbial Engineering, Laboratory of Bioresource and Applied Microbiology, School of Life Sciences, Henan University, Kaifeng, China
| | - Feng Hua Xu
- School of Pharmaceutical, Henan University, Kaifeng, China
| | - Huiping Liu
- Institute of Microbial Engineering, Laboratory of Bioresource and Applied Microbiology, School of Life Sciences, Henan University, Kaifeng, China
| | - Juanmei Zhang
- Institute of Microbial Engineering, Laboratory of Bioresource and Applied Microbiology, School of Life Sciences, Henan University, Kaifeng, China.,School of Pharmaceutical, Henan University, Kaifeng, China
| | - Fengying Liu
- Institute of Microbial Engineering, Laboratory of Bioresource and Applied Microbiology, School of Life Sciences, Henan University, Kaifeng, China.,Engineering Research Center for Applied Microbiology of Henan Province, Kaifeng, China
| | - Gang Wang
- Institute of Microbial Engineering, Laboratory of Bioresource and Applied Microbiology, School of Life Sciences, Henan University, Kaifeng, China.,Engineering Research Center for Applied Microbiology of Henan Province, Kaifeng, China
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Galeano RMS, de Russo Godoy FM, Duré LMM, Fernandes-Júnior PI, Baldani JI, Paggi GM, Zanoelo FF, Brasil MS. Potential of Bacterial Strains Isolated from Ironstone Outcrops Bromeliads to Promote Plant Growth Under Drought Conditions. Curr Microbiol 2021; 78:2741-2752. [PMID: 34031727 DOI: 10.1007/s00284-021-02540-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2020] [Accepted: 05/08/2021] [Indexed: 01/11/2023]
Abstract
Plant growth-promoting bacteria (PGPB) are bacteria that have mechanisms that facilitate plant growth in stress conditions such as drought. The objective of this study was to characterize bacterial strains isolated from bromeliads roots in ironstone outcrops (Urucum Residual Plateau, Mato Grosso do Sul, Brazil) for plant growth-promoting under drought conditions. Firstly, we screened isolates with the presence of 1-aminocyclopropane-1-carboxylate (ACC) deaminase activity. Then, all isolates were tested for tolerance to drought, exopolysaccharides (EPS) production, indole-3-acetic acid (IAA)-producing abilities, phosphate and zinc solubilization, production of catalase and hydrolytic enzymes (amylase, cellulase, and protease). Germination assay and a pot experiment with maize plants submitted to well-watered and drought conditions were performed with the strains most promising (VBN11 and VBE23). Briefly, Bacillus cereus VBE23 showed in vitro higher ACC deaminase activity (3.83 and 2.52 µmol α-KB mg-1 h-1 in non-drought and drought conditions, respectively), tolerance to drought, EPS production and other mechanisms of plant growth promotion: solubilization of phosphate and zinc, ammonia production, catalase activity and production of hydrolytic enzymes (amylase, cellulase, and protease). Inoculation of strain VBE23 in maize seeds submitted to drought conditions showed higher germination concerning uninoculated seeds and inoculated with VBN11. Also, the results indicated that the isolate VBE23 provided higher values of fresh and dry biomass compared to the control of uninoculated treatment and inoculated with VBN11 under drought conditions. This is the first report on the PGPB from ironstone outcrops of Urucum Residual Plateau, Mato Grosso do Sul, Brazil. Thus, this bacterial isolate could be used as a strategy for the facilitation of plant growth in drought environments.
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Affiliation(s)
- Rodrigo Mattos Silva Galeano
- Laboratory of Genetic and Microbiology, Campus Pantanal, Federal University of Mato Grosso of Sul/UFMS, Campus Pantanal/UFMS-CPAN, Corumbá, MS, Brazil
- Laboratory of Biochemistry and Microorganisms, Bioscience Institute (InBio), Federal University of Mato Grosso of Sul/UFMS, Campo Grande, MS, Brazil
| | - Fernanda Maria de Russo Godoy
- Laboratory of Genetic and Microbiology, Campus Pantanal, Federal University of Mato Grosso of Sul/UFMS, Campus Pantanal/UFMS-CPAN, Corumbá, MS, Brazil
| | - Laís Mayara Melo Duré
- Laboratory of Genetic and Microbiology, Campus Pantanal, Federal University of Mato Grosso of Sul/UFMS, Campus Pantanal/UFMS-CPAN, Corumbá, MS, Brazil
| | | | | | - Gecele Matos Paggi
- Laboratory of Genetic and Microbiology, Campus Pantanal, Federal University of Mato Grosso of Sul/UFMS, Campus Pantanal/UFMS-CPAN, Corumbá, MS, Brazil
- Faculty of Pharmaceutical Sciences, Food and Nutrition (Facfan), Federal University of Mato Grosso of Sul/UFMS, Campo Grande, MS, Brazil
| | - Fabiana Fonseca Zanoelo
- Laboratory of Biochemistry and Microorganisms, Bioscience Institute (InBio), Federal University of Mato Grosso of Sul/UFMS, Campo Grande, MS, Brazil
| | - Marivaine Silva Brasil
- Laboratory of Genetic and Microbiology, Campus Pantanal, Federal University of Mato Grosso of Sul/UFMS, Campus Pantanal/UFMS-CPAN, Corumbá, MS, Brazil.
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Getahun A, Kiros S, Muleta D, Assefa F. Genetic and metabolic diversities of rhizobacteria isolated from degraded soil of Ethiopia. Heliyon 2020; 6:e05697. [PMID: 33367126 PMCID: PMC7749386 DOI: 10.1016/j.heliyon.2020.e05697] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2020] [Revised: 10/03/2020] [Accepted: 12/07/2020] [Indexed: 11/25/2022] Open
Abstract
Genetic and metabolic diversities of rhizobacteria are the fundamental sources for their adaptation to cope with abiotic and biotic stresses in order to enhance growth and health of plants in the soil. Thus, this study was initiated to assess the genetic and metabolic diversities of rhizobacteria isolated from plants grown in degraded soil through BOX-PCR and partial sequencing of 16S rRNA genes. A total of eighty isolates were recovered and subjected to phenotypic profiling of carbohydrate and amino acid utilization, BOX PCR and 16S rRNA profiling. The phenotypic profiling showed remarkable metabolic versatility with Ochrobactrum spp, Pseudomonas spp and Klebsiella spp, and BOX-PCR showed greater discriminatory power for fingerprinting of rhizobacterial isolates with high degree of polymorphism. Bacillus spp showed the highest Simpson's diversity Index. The 16S rRNA genes sequence assigned the rhizobacteria to phyla Proteobacteria with Gammaproteobacteria and Alphaproteobacteria classes and Firmicutes with Bacilli class. The data also showed that the most dominant species were Pseudomonas and Ochrobactrum. Genetic and metabolic diversities of the rhizobacterial isolates reveal the potential of these microbes for plant growth improvement under water deficient soil after testing other inoculant traits.
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Affiliation(s)
| | - Solomon Kiros
- AddisAbaba Institute of Technology, Addis Ababa University, Ethiopia
| | - Diriba Muleta
- College of Natural Sciences, Addis Ababa University, Ethiopia
- Corresponding author.
| | - Fassil Assefa
- College of Natural Sciences, Addis Ababa University, Ethiopia
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Souza GÁAD, de Almeida AC, Xavier MADS, da Silva LMV, Sousa CN, Sanglard DA, Xavier AREDO. Characterization and molecular epidemiology of Staphylococcus aureus strains resistant to beta-lactams isolated from the milk of cows diagnosed with subclinical mastitis. Vet World 2019; 12:1931-1939. [PMID: 32095043 PMCID: PMC6989334 DOI: 10.14202/vetworld.2019.1931-1939] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2019] [Accepted: 11/07/2019] [Indexed: 11/16/2022] Open
Abstract
BACKGROUND AND AIM The term ESKAPE, recognized by the WHO, is an acronym, which refers to the pathogens Enterococcus faecium, Staphylococcus aureus, Klebsiella pneumoniae, Acinetobacter baumannii, Pseudomonas aeruginosa, and Enterobacter spp., which is extremely virulent and multidrug-resistant. Although the term is used to designate nosocomial pathogens, in a milking environment, strains of Methicillin-resistant S. aureus have been isolated from cattle diagnosed with clinical and subclinical mastitis. Resistant strains may be involved in the transfer of genes conferring resistance to beta-lactam antimicrobials among the species of microorganisms related to mastitis etiology. This study aimed to trace the phenotypic and genotypic profiles of susceptibility to beta-lactams in S. aureus isolated from milk of cattle diagnosed with subclinical mastitis obtained from different rural properties located in the North of Minas Gerais State, Brazil. MATERIALS AND METHODS Sixteen microorganisms previously identified as S. aureus isolated from milk of cattle diagnosed with subclinical mastitis were submitted to matrix-assisted laser desorption/ionization-time-of-flight (MALDI-TOF), mass spectrometry, and polymerase chain reaction (PCR) analysis for microbial species confirmation. The S. aureus beta-lactams antimicrobial phenotypic resistance profile was investigated by disk diffusion method. PCR methods were also performed to investigate the S. aureus genotypic beta-lactams resistance profile. For this purpose, bla Z, mec A, mec ALGA251, bla Oxa23, and bla KPC genes were screened among S. aureus isolates. The genetic diversity of S. aureus by fingerprint random amplified polymorphic DNA (RAPD)-PCR was also performed in this study. RESULTS All isolates showed phenotypic resistance to at least three beta-lactams, among which was meropenem. None of the isolates tested positive for the genes mec ALGA251, bla Oxa23, and bla KPC; however, the presence of the genes bla Z and mecA was detected among the isolates. The fingerprint analysis divided isolates into two distinct groups and 15 different subgroups. Despite the presence of clonality among the isolates, the PCR-RAPD analysis unveiled a heterogeneous profile with genetic diversity among the S. aureus isolates. CONCLUSION In this study, we identified beta-lactams resistant S. aureus strains isolated from the milk of cows diagnosed with subclinical mastitis. The S. aureus beta-lactams resistance was investigated using a phenotypic and genotypic approach. We believe that molecular epidemiology, improved knowledge, and genetic basis of resistance to beta-lactams might assist in asserting guidelines for better management practices of dealing with subclinical mastitis and mapping of origin of resistant pathogens in the studied Brazilian area.
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Affiliation(s)
- Geziella Áurea Aparecida Damasceno Souza
- Federal University of Minas Gerais, Institute of Agrarian Sciences, Center for Research in Agrarian Sciences, Laboratory of Animal Health, Montes Claros, Minas Gerais, Brazil
| | - Anna Christina de Almeida
- Federal University of Minas Gerais, Institute of Agrarian Sciences, Center for Research in Agrarian Sciences, Laboratory of Animal Health, Montes Claros, Minas Gerais, Brazil
| | - Mauro Aparecido de Sousa Xavier
- State University of Montes Claros, Center of Biological and Health Sciences, Microbiology Laboratory, Montes Claros, Minas Gerais, Brazil
| | - Lívia Mara Vitorino da Silva
- Federal University of Minas Gerais, Institute of Agrarian Sciences, Center for Research in Agrarian Sciences, Laboratory of Animal Health, Montes Claros, Minas Gerais, Brazil
| | - Cintya Neves Sousa
- Federal University of Minas Gerais, Institute of Agrarian Sciences, Center for Research in Agrarian Sciences, Laboratory of Animal Health, Montes Claros, Minas Gerais, Brazil
| | - Demerson Arruda Sanglard
- Federal University of Minas Gerais, Institute of Agrarian Sciences, Center for Research in Agrarian Sciences, Laboratory of Biotechnology, Montes Claros, Minas Gerais, Brazil
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