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Han G, Liu X, Gao T, Zhang L, Zhang X, Wei X, Lin Y, Yin B. Prognostic prediction of gastric cancer based on H&E findings and machine learning pathomics. Mol Cell Probes 2024; 78:101983. [PMID: 39299554 DOI: 10.1016/j.mcp.2024.101983] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2024] [Revised: 09/15/2024] [Accepted: 09/16/2024] [Indexed: 09/22/2024]
Abstract
AIM In this research, we aimed to develop a model for the accurate prediction of gastric cancer based on H&E findings combined with machine learning pathomics. METHODS Transcriptome data, pathological images, and clinical data from 443 cases were retrieved from TCGA (The Cancer Genome Atlas Program) for survival analysis. The images were segmented using the Otsu algorithm, and features were extracted using the PyRadiomics package. Subsequently, the cases were randomly divided into a training cohort of 165 cases and a validation cohort of 69 cases. Features selected via minimum Redundancy - Maximum Relevance (mRMR)- recursive feature elimination (RFE) screening were used to train a model using the Gradient Boosting Machine (GBM) algorithm. The model's performance was evaluated using the area under the receiver operating characteristic (ROC) curve (AUC), calibration curves, and decision curves. Additionally, the correlation between the Pathomics score (PS) and immune genes was examined. RESULTS In the multivariate analysis, heightened infiltration of activated CD4 memory T cells was strongly associated with improved overall survival (HR = 0.505, 95 % CI = 0.342-0.745, P < 0.001). The pathomic model, exhibiting robust predictive capability, demonstrated impressive AUC values of 0.844 and 0.750 in both study cohorts. The Decision Curve Analysis (DCA) unequivocally underscored the model's exceptional clinical utility. In a subsequent multivariate analysis, heightened infiltration of the PS also emerged as a significant protective factor for overall survival (HR = 0.506, 95 % CI = 0.329-0.777, P = 0.002). CONCLUSION The pathomic model based on H&E slides for predicting the infiltration degree of activated CD4 memory T cells, along with integrated bioinformatics analysis elucidating potential molecular mechanisms, offers novel prognostic indicators for the precise stratification and individualized prognosis of gastric cancer patients.
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Affiliation(s)
- Guoda Han
- First Department of Gastrointestinal Surgery, Cangzhou Central Hospital, Cangzhou, 061001, Hebei, China.
| | - Xu Liu
- First Department of Gastrointestinal Surgery, Cangzhou Central Hospital, Cangzhou, 061001, Hebei, China
| | - Tian Gao
- First Department of Gastrointestinal Surgery, Cangzhou Central Hospital, Cangzhou, 061001, Hebei, China
| | - Lei Zhang
- Department of Clinical Laboratory, Cangzhou Central Hospital, Cangzhou, 061001, Hebei, China
| | - Xiaoling Zhang
- Pathology Department, Cangzhou Central Hospital, Cangzhou, 061001, Hebei, China
| | - Xiaonan Wei
- First Department of Gastrointestinal Surgery, Cangzhou Central Hospital, Cangzhou, 061001, Hebei, China
| | - Yecheng Lin
- First Department of Gastrointestinal Surgery, Cangzhou Central Hospital, Cangzhou, 061001, Hebei, China
| | - Bohong Yin
- First Department of Gastrointestinal Surgery, Cangzhou Central Hospital, Cangzhou, 061001, Hebei, China
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Cho H, Moon D, Heo SM, Chu J, Bae H, Choi S, Lee Y, Kim D, Jo Y, Kim K, Hwang K, Lee D, Choi HK, Kim S. Artificial intelligence-based real-time histopathology of gastric cancer using confocal laser endomicroscopy. NPJ Precis Oncol 2024; 8:131. [PMID: 38877301 PMCID: PMC11178780 DOI: 10.1038/s41698-024-00621-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2024] [Accepted: 05/24/2024] [Indexed: 06/16/2024] Open
Abstract
There has been a persistent demand for an innovative modality in real-time histologic imaging, distinct from the conventional frozen section technique. We developed an artificial intelligence-driven real-time evaluation model for gastric cancer tissue using confocal laser endomicroscopic system. The remarkable performance of the model suggests its potential utilization as a standalone modality for instantaneous histologic assessment and as a complementary tool for pathologists' interpretation.
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Affiliation(s)
- Haeyon Cho
- Department of Pathology, Asan Medical Center, University of Ulsan College of Medicine, Seoul, Republic of Korea
| | - Damin Moon
- Artificial Intelligence Research Center, JLK Inc., Seoul, Republic of Korea
| | - So Mi Heo
- Department of Pathology, Ajou University School of Medicine, Suwon, Republic of Korea
| | - Jinah Chu
- Department of Pathology, Kangbuk Samsung Hospital, Sungkyunkwan University School of Medicine, Seoul, Republic of Korea
| | - Hyunsik Bae
- Department of Pathology and Translational Genomics, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Republic of Korea
- Pathology center, Seegene Medical Foundation, Seoul, Republic of Korea
| | - Sangjoon Choi
- Department of Pathology, Asan Medical Center, University of Ulsan College of Medicine, Seoul, Republic of Korea
| | - Yubin Lee
- Artificial Intelligence Research Center, JLK Inc., Seoul, Republic of Korea
| | - Dongmin Kim
- Artificial Intelligence Research Center, JLK Inc., Seoul, Republic of Korea
| | - Yeonju Jo
- VPIX Medical Inc., Daejeon, Republic of Korea
| | | | | | - Dakeun Lee
- Department of Pathology, Ajou University School of Medicine, Suwon, Republic of Korea.
- Department of Biomedical Sciences, Ajou University Graduate School of Medicine, Suwon, Republic of Korea.
| | - Heung-Kook Choi
- Artificial Intelligence Research Center, JLK Inc., Seoul, Republic of Korea.
| | - Seokhwi Kim
- Department of Pathology, Ajou University School of Medicine, Suwon, Republic of Korea.
- Department of Biomedical Sciences, Ajou University Graduate School of Medicine, Suwon, Republic of Korea.
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Bae H, Cho H, Jo Y, Heo SM, Chu J, Choi S, Hwang K, Kim K, Kim S. Real-time Histological Evaluation of Gastric Cancer Tissue by Using a Confocal Laser Endomicroscopic System. In Vivo 2024; 38:855-863. [PMID: 38418139 PMCID: PMC10905484 DOI: 10.21873/invivo.13511] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2023] [Revised: 10/31/2023] [Accepted: 11/15/2023] [Indexed: 03/01/2024]
Abstract
BACKGROUND/AIM The need for instant histological evaluation of fresh tissue, especially in cancer treatment, remains paramount. The conventional frozen section technique has inherent limitations, prompting the exploration of alternative methods. A recently developed confocal laser endomicroscopic system provides real-time imaging of the tissue without the need for glass slide preparation. Herein, we evaluated its applicability in the histologic evaluation of gastric cancer tissues. MATERIALS AND METHODS A confocal laser endomicroscopic system (CLES) with a Lissajous pattern laser scanning, was developed. Fourteen fresh gastric cancer tissues and the same number of normal gastric tissues were obtained from advanced gastric cancer patients. Fluorescein sodium was used for staining. Five pathologists interpreted 100 endomicroscopic images and decided their histologic location and the presence of cancer. Following the review of matched hematoxylin and eosin (H&E) slides, their performance was evaluated with another 100 images. RESULTS CLES images mirrored gastric tissue histology. Pathologists were able to detect the histologic location of the images with 65.7% accuracy and differentiate cancer tissue from normal with 74.7% accuracy. The sensitivity and specificity of cancer detection were 71.9% and 76.1%. Following the review of matched H&E images, the accuracy of identifying the histologic location was increased to 92.8% (p<0.0001), and that of detecting cancer tissue was also increased to 90.9% (p<0.001). The sensitivity and specificity of cancer detection were enhanced to 89.1% and 93.2% (p<0.0001). CONCLUSION High-quality histological images were immediately acquired by the CLES. The operator training enabled the accurate detection of cancer and histologic location raising its potential applicability as a real-time tissue imaging modality.
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Affiliation(s)
- Hyunsik Bae
- Department of Pathology and Translational Genomics, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Republic of Korea
| | - Haeyon Cho
- Department of Pathology, Asan Medical Center, Ulsan University Medical School, Seoul, Republic of Korea
| | - Yeonju Jo
- VPIX Medical Inc., Daejeon, Republic of Korea
| | - So Mi Heo
- Department of Pathology, Ajou University School of Medicine, Suwon, Republic of Korea
| | - Jinah Chu
- Department of Pathology, Kangbuk Samsung Hospital, Sungkyunkwan University School of Medicine, Seoul, Republic of Korea
| | - Sangjoon Choi
- Department of Pathology, Asan Medical Center, Ulsan University Medical School, Seoul, Republic of Korea
| | | | | | - Seokhwi Kim
- Department of Pathology, Ajou University School of Medicine, Suwon, Republic of Korea;
- Department of Biomedical Sciences, Ajou University Graduate School of Medicine, Suwon, Republic of Korea
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Liang H, Li Z, Lin W, Xie Y, Zhang S, Li Z, Luo H, Li T, Han S. Enhancing Gastrointestinal Stromal Tumor (GIST) Diagnosis: An Improved YOLOv8 Deep Learning Approach for Precise Mitotic Detection. IEEE ACCESS 2024; 12:116829-116840. [DOI: 10.1109/access.2024.3446613] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/14/2024]
Affiliation(s)
- Haoxin Liang
- Department of General Surgery, Zhujiang Hospital, Southern Medical University, Guangzhou, China
| | - Zhichun Li
- Department of Health Technology and Informatics, The Hong Kong Polytechnic University, Hong Kong, SAR, China
| | - Weijie Lin
- The Second Clinical College, Southern Medical University, Guangzhou, Guangdong, China
| | - Yuheng Xie
- The Second Clinical College, Southern Medical University, Guangzhou, Guangdong, China
| | - Shuo Zhang
- School of Instrument Science and Engineering, Southeast University, Nanjing, Jiangsu, China
| | - Zhou Li
- Department of General Surgery, Zhujiang Hospital, Southern Medical University, Guangzhou, China
| | - Hongyu Luo
- Department of General Surgery, The Sixth People’s Hospital of Huizhou City, Huizhou, China
| | - Tian Li
- Department of Health Technology and Informatics, The Hong Kong Polytechnic University, Hong Kong, SAR, China
| | - Shuai Han
- Department of General Surgery, Zhujiang Hospital, Southern Medical University, Guangzhou, China
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