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Hwang O, Emmett B, Andersen D, Howe A, Ro K, Trabue S. Effects of swine manure dilution with lagoon effluent on microbial communities and odor formation in pit recharge systems. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2024; 358:120884. [PMID: 38643622 DOI: 10.1016/j.jenvman.2024.120884] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/09/2023] [Revised: 03/29/2024] [Accepted: 04/10/2024] [Indexed: 04/23/2024]
Abstract
Pit recharge systems (PRS) control odor by managing organic solids in swine manure. However, there needs to be more understanding of PRS's effect on the microbiome composition and its impact on odor formation. A study was conducted to understand how recharge intervals used in PRS impact manure microbiome and odor formation. Bioreactors dynamically loaded simulated recharge intervals of 14, 10, and 4 days by diluting swine manure with lagoon effluent at varying ratios. Treatment ratios tested included 10:0 (control), 7:3 (typical Korean PRS), 5:5 (enhanced PRS #1), and 2:8 (enhanced PRS #2). Manure microbial membership, chemical concentrations, and odorant concentrations were used to identify the interactions between microbiota, manure, and odor. The initial microbial community structure was controlled by dilution ratio and manure barn source material. Firmicutes and Proteobacteria were the dominant microbial phyla in manure and lagoon effluent, respectively, and significantly decreased or increased with dilution. Key microbial species were Clostridium saudiense in manure and Pseudomonas caeni in lagoon effluent. Percentages of these species declined by 8.9% or increased by 17.6%, respectively, with each unit dilution. Microbial community composition was controlled by both treatment (i.e., manure dilution ratio and barn source material) and environmental factors (i.e., solids and pH). Microbiome composition was correlated with manure odor formation profiles, but this effect was inseparable from environmental factors, which explained over 75% of the variance in odor profiles. Consequently, monitoring solids and pH in recharge waters will significantly impact odor control in PRS.
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Affiliation(s)
- Okhwa Hwang
- National Institute of Animal Science, Rural Development Administration, 1500, Kongjwipatjwi-Ro, Iseo-Myeon, Wanju-Gun, Jeollabuk-Do, 55365, Republic of Korea.
| | - Bryan Emmett
- USDA Agricultural Research Service, National Laboratory for Agriculture and the Environment, 1015 N. University Boulevard, Ames, IA, 50011, United States.
| | - Daniel Andersen
- Department of Agricultural and Biosystems Engineering, 3348 Elings Hall, Iowa State University, Ames, IA, 50011, United States.
| | - Adina Howe
- Department of Agricultural and Biosystems Engineering, 3348 Elings Hall, Iowa State University, Ames, IA, 50011, United States.
| | - Kyoung Ro
- USDA Agricultural Research Service, Coastal Plains Soil, Water, and Plant Research Center, 2611 West Lucas St., Florence, SC, 29501, United States.
| | - Steven Trabue
- USDA Agricultural Research Service, National Laboratory for Agriculture and the Environment, 1015 N. University Boulevard, Ames, IA, 50011, United States.
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Hong SW, Park J, Jeong H, Kim M. Evaluation of the microbiome composition in particulate matter inside and outside of pig houses. JOURNAL OF ANIMAL SCIENCE AND TECHNOLOGY 2021; 63:640-650. [PMID: 34189511 PMCID: PMC8203996 DOI: 10.5187/jast.2021.e52] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/10/2021] [Revised: 02/24/2021] [Accepted: 02/28/2021] [Indexed: 12/12/2022]
Abstract
Particulate matter (PM) produced in pig houses may contain microbes which can
spread by airborne transmission, and PM and microbes in PM adversely affect
human and animal health. To investigate the microbiome in PM from pig houses,
nine PM samples were collected in summer 2020 inside and outside of pig houses
located in Jangseong-gun, Jeollanam-do Province, Korea, comprising three PM
samples from within a nursery pig house (I-NPH), three samples from within a
finishing pig house (I-FPH), and three samples from outside of the pig houses
(O-PH). Microbiomes were analyzed using 16S rRNA gene amplicon sequencing.
Firmicutes was the most dominant phylum and accounted for 64.8%–97.5% of
total sequences in all the samples, followed by Proteobacteria
(1.4%–21.8%) and Bacteroidetes (0.3%–13.7%). In total, 31 genera
were represented by > 0.3% of all sequences, and only
Lactobacillus, Turicibacter, and
Aerococcus differed significantly among the three PM sample
types. All three genera were more abundant in the I-FPH samples than in the O-PH
samples. Alpha diversity indices did not differ significantly among the three PM
types, and a principal coordinate analysis suggested that overall microbial
communities were similar across PM types. The concentration of PM did not
significantly differ among the three PM types, and no significant correlation of
PM concentration with the abundance of any potential pathogen was observed. The
present study demonstrates that microbial composition in PM inside and outside
of pig houses is similar, indicating that most microbe-containing PM inside pig
houses leaks to the outside from where it, along with microbe-containing PM on
the outside, may re-enter the pig houses. Our results may provide useful
insights regarding strategies to mitigate potential risk associated with pig
farming PM and pathogens in PM.
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Affiliation(s)
- Se-Woon Hong
- Department of Rural and Biosystems Engineering, Chonnam National University, Gwangju 61186, Korea.,Education and Research Unit for Climate-Smart Reclaimed-Tideland Agriculture, Chonnam National University, Gwangju 61186, Korea.,AgriBio Institute of Climate Change Management, Chonnam National University, Gwangju 61186, Korea
| | - Jinseon Park
- AgriBio Institute of Climate Change Management, Chonnam National University, Gwangju 61186, Korea
| | - Hanna Jeong
- Department of Rural and Biosystems Engineering, Chonnam National University, Gwangju 61186, Korea.,Education and Research Unit for Climate-Smart Reclaimed-Tideland Agriculture, Chonnam National University, Gwangju 61186, Korea
| | - Minseok Kim
- AgriBio Institute of Climate Change Management, Chonnam National University, Gwangju 61186, Korea.,Department of Animal Science, College of Agriculture and Life Sciences, Chonnam National University, Gwangju 61186, Korea
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Zhang X, Ma C, Zhang W, Li W, Yu J, Xue D, Wu X, Deng G. Shifts in microbial community, pathogenicity-related genes and antibiotic resistance genes during dairy manure piled up. Microb Biotechnol 2020; 13:1039-1053. [PMID: 32202696 PMCID: PMC7264890 DOI: 10.1111/1751-7915.13551] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2019] [Revised: 02/15/2020] [Accepted: 02/17/2020] [Indexed: 01/02/2023] Open
Abstract
The uncomposted faeces of dairy cow are usually stacked on cow breeding farms, dried under natural conditions and then used as cow bedding material or they may be continuously piled up. However, no information is available to evaluate variations in the human and animal pathogen genes and antibiotic resistance during the accumulation of fresh faeces of dairy cow to manure. Here, we present the metagenomic analysis of fresh faeces and manure from a dairy farm in Ning Xia, showing a unique enrichment of human and animal pathogen genes and antibiotic resistance genes (ARGs) in manure. We found that manure accumulation could significantly increase the diversity and abundance of the pathogenic constituents. Furthermore, pathogens from manure could spread to the plant environment and enphytotic pathogens could affect the yield and quality of crops during the use of manure as a fertilizer. Levels of virulence genes and ARGs increased with the enrichment of microbes and pathogens when faeces accumulated to manure. Accumulated manure was also the transfer station of ARGs to enrich the ARGs in the environment, indicating the ubiquitous presence of environmental antibiotic resistance genes. Our results demonstrate that manure accumulation and usage without effective manure management is an unreasonable approach that could enrich pathogenic microorganisms and ARGs in the environment. The manure metagenome structure allows us to appreciate the overall influence and interaction of animal waste on water, soil and other areas impacted by faecal accumulation and the factors that influence pathogen occurrence in products from dairy cows.
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Affiliation(s)
- Xu Zhang
- Key Lab of Ministry of Education for Protection and Utilization of Special Biological Resources in Western ChinaNingxia UniversityNingxiaChina
- School of Life ScienceNingxia UniversityNingxiaChina
| | - Chenjie Ma
- Key Lab of Ministry of Education for Protection and Utilization of Special Biological Resources in Western ChinaNingxia UniversityNingxiaChina
- School of Life ScienceNingxia UniversityNingxiaChina
| | - Wen Zhang
- Key Lab of Ministry of Education for Protection and Utilization of Special Biological Resources in Western ChinaNingxia UniversityNingxiaChina
- School of Life ScienceNingxia UniversityNingxiaChina
| | - Wu Li
- Key Lab of Ministry of Education for Protection and Utilization of Special Biological Resources in Western ChinaNingxia UniversityNingxiaChina
- School of Life ScienceNingxia UniversityNingxiaChina
| | - Jialin Yu
- Key Lab of Ministry of Education for Protection and Utilization of Special Biological Resources in Western ChinaNingxia UniversityNingxiaChina
- School of Life ScienceNingxia UniversityNingxiaChina
| | - Di Xue
- Key Lab of Ministry of Education for Protection and Utilization of Special Biological Resources in Western ChinaNingxia UniversityNingxiaChina
- School of Life ScienceNingxia UniversityNingxiaChina
| | - Xiaolin Wu
- Key Lab of Ministry of Education for Protection and Utilization of Special Biological Resources in Western ChinaNingxia UniversityNingxiaChina
- School of Life ScienceNingxia UniversityNingxiaChina
| | - Guangcun Deng
- Key Lab of Ministry of Education for Protection and Utilization of Special Biological Resources in Western ChinaNingxia UniversityNingxiaChina
- School of Life ScienceNingxia UniversityNingxiaChina
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