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Harvey DJ. Analysis of carbohydrates and glycoconjugates by matrix-assisted laser desorption/ionization mass spectrometry: An update for 2017-2018. MASS SPECTROMETRY REVIEWS 2023; 42:227-431. [PMID: 34719822 DOI: 10.1002/mas.21721] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/14/2021] [Revised: 07/26/2021] [Accepted: 07/26/2021] [Indexed: 06/13/2023]
Abstract
This review is the tenth update of the original article published in 1999 on the application of matrix-assisted laser desorption/ionization mass spectrometry (MALDI) mass spectrometry to the analysis of carbohydrates and glycoconjugates and brings coverage of the literature to the end of 2018. Also included are papers that describe methods appropriate to glycan and glycoprotein analysis by MALDI, such as sample preparation techniques, even though the ionization method is not MALDI. Topics covered in the first part of the review include general aspects such as theory of the MALDI process, new methods, matrices, derivatization, MALDI imaging, fragmentation and the use of arrays. The second part of the review is devoted to applications to various structural types such as oligo- and poly-saccharides, glycoproteins, glycolipids, glycosides, and biopharmaceuticals. Most of the applications are presented in tabular form. The third part of the review covers medical and industrial applications of the technique, studies of enzyme reactions, and applications to chemical synthesis. The reported work shows increasing use of combined new techniques such as ion mobility and highlights the impact that MALDI imaging is having across a range of diciplines. MALDI is still an ideal technique for carbohydrate analysis and advancements in the technique and the range of applications continue steady progress.
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Affiliation(s)
- David J Harvey
- Nuffield Department of Medicine, Target Discovery Institute, University of Oxford, Oxford, UK
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Hakoda H, Kiritani S, Kokudo T, Yoshimura K, Iwano T, Tanimoto M, Ishizawa T, Arita J, Akamatsu N, Kaneko J, Takeda S, Hasegawa K. Probe electrospray ionization mass spectrometry-based rapid diagnosis of liver tumors. J Gastroenterol Hepatol 2022; 37:2182-2188. [PMID: 35945170 DOI: 10.1111/jgh.15976] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/10/2022] [Revised: 07/28/2022] [Accepted: 08/03/2022] [Indexed: 12/09/2022]
Abstract
BACKGROUND AND AIM Prompt differential diagnosis of liver tumors is clinically important and sometimes difficult. A new diagnostic device that combines probe electrospray ionization-mass spectrometry (PESI-MS) and machine learning may help provide the differential diagnosis of liver tumors. METHODS We evaluated the diagnostic accuracy of this new PESI-MS device using tissues obtained and stored from previous surgically resected specimens. The following cancer tissues (with collection dates): hepatocellular carcinoma (HCC, 2016-2019), intrahepatic cholangiocellular carcinoma (ICC, 2014-2019), and colorectal liver metastasis (CRLM, 2014-2019) from patients who underwent hepatic resection were considered for use in this study. Non-cancerous liver tissues (NL) taken from CRLM cases were also incorporated into the analysis. Each mass spectrum provided by PESI-MS was tested using support vector machine, a type of machine learning, to evaluate the discriminatory ability of the device. RESULTS In this study, we used samples from 91 of 139 patients with HCC, all 24 ICC samples, and 103 of 202 CRLM samples; 80 NL from CRLM cases were also used. Each mass spectrum was obtained by PESI-MS in a few minutes and was evaluated by machine learning. The sensitivity, specificity, and diagnostic accuracy of the PESI-MS device for discriminating HCC, ICC, and CRLM from among a mix of all three tumors and from NL were 98.9%, 98.1%, and 98.3%; 87.5%, 93.1%, and 92.6%; and 99.0%, 97.9%, and 98.3%, respectively. CONCLUSION This study demonstrated that PESI-MS and machine learning could discriminate liver tumors accurately and rapidly.
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Affiliation(s)
- Hiroyuki Hakoda
- Hepato-Biliary-Pancreatic Surgery Division, Department of Surgery, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan
| | - Sho Kiritani
- Hepato-Biliary-Pancreatic Surgery Division, Department of Surgery, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan
| | - Takashi Kokudo
- Hepato-Biliary-Pancreatic Surgery Division, Department of Surgery, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan
| | - Kentaro Yoshimura
- Department of Anatomy and Cell Biology, Interdisciplinary Graduate School of Medicine and Engineering, University of Yamanashi, Yamanashi, Japan
| | - Tomohiko Iwano
- Department of Anatomy and Cell Biology, Interdisciplinary Graduate School of Medicine and Engineering, University of Yamanashi, Yamanashi, Japan
| | - Meguri Tanimoto
- Hepato-Biliary-Pancreatic Surgery Division, Department of Surgery, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan
| | - Takeaki Ishizawa
- Hepato-Biliary-Pancreatic Surgery Division, Department of Surgery, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan
| | - Junichi Arita
- Hepato-Biliary-Pancreatic Surgery Division, Department of Surgery, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan
| | - Nobuhisa Akamatsu
- Hepato-Biliary-Pancreatic Surgery Division, Department of Surgery, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan
| | - Junichi Kaneko
- Hepato-Biliary-Pancreatic Surgery Division, Department of Surgery, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan
| | - Sen Takeda
- Department of Anatomy and Cell Biology, Interdisciplinary Graduate School of Medicine and Engineering, University of Yamanashi, Yamanashi, Japan.,Department of Anatomy, Teikyo University School of Medicine, Tokyo, Japan
| | - Kiyoshi Hasegawa
- Hepato-Biliary-Pancreatic Surgery Division, Department of Surgery, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan
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Hiraoka K, Ariyada O, Usmanov DT, Chen LC, Ninomiya S, Yoshimura K, Takeda S, Yu Z, Mandal MK, Wada H, Rankin-Turner S, Nonami H. Probe Electrospray Ionization (PESI) and Its Modified Versions: Dipping PESI (dPESI), Sheath-Flow PESI (sfPESI) and Adjustable sfPESI (ad-sfPESI). Mass Spectrom (Tokyo) 2020; 9:A0092. [PMID: 33299735 PMCID: PMC7708747 DOI: 10.5702/massspectrometry.a0092] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2020] [Accepted: 10/21/2020] [Indexed: 11/23/2022] Open
Abstract
In 2007, probe electrospray ionization/mass spectrometry (PESI/MS) was developed. In this technique, the needle is moved down along a vertical axis and the tip of the needle touched to the sample. After capturing the sample at the needle tip, the needle is then moved up and a high voltage is applied to the needle at the highest position to generate electrospray. Due to the discontinuous sampling followed by the generation of spontaneous electrospray, sequential and exhaustive electrospray takes place depending on the surface activity of the analytes. As modified versions of PESI, dipping PESI (dPESI), sheath-flow PESI (sfPESI) and adjustable sfPESI (ad-sfPESI) have been developed. These methods are complementary to each other and they can be applicable to surface and bulk analysis of various biological samples. In this article, the characteristics of these methods and their applications to real samples will be reviewed.
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Affiliation(s)
- Kenzo Hiraoka
- Clean Energy Research Center, University of Yamanashi, 4–3–11 Takeda, Kofu 400–8511, Japan
| | - Osamu Ariyada
- ARIOS INC., 3–2–20 Musashino, Akishima, Tokyo 196–0021, Japan
| | - Dilshadbek T. Usmanov
- Clean Energy Research Center, University of Yamanashi, 4–3–11 Takeda, Kofu 400–8511, Japan
| | - Lee C. Chen
- Graduate Faculty of Interdisciplinary Research, University of Yamanashi, 4–3–11 Takeda, Kofu 400–8511, Japan
| | - Satoshi Ninomiya
- Graduate Faculty of Interdisciplinary Research, University of Yamanashi, 4–3–11 Takeda, Kofu 400–8511, Japan
| | - Kentaro Yoshimura
- Department of Anatomy and Cell Biology, Faculty of Medicine, University of Yamanashi, 1110 Shimo-Kateau, Chuo, Yamanashi 409–3898, Japan
| | - Sen Takeda
- Department of Anatomy and Cell Biology, Faculty of Medicine, University of Yamanashi, 1110 Shimo-Kateau, Chuo, Yamanashi 409–3898, Japan
| | - Zhang Yu
- Clean Energy Research Center, University of Yamanashi, 4–3–11 Takeda, Kofu 400–8511, Japan
| | - Mridul K. Mandal
- Clean Energy Research Center, University of Yamanashi, 4–3–11 Takeda, Kofu 400–8511, Japan
| | - Hiroshi Wada
- Kyushu Okinawa Agricultural Research Center, National Agricultural and Food Research Organization, 496 Izumi, Chikugo, Fukuoka 833–0041, Japan
| | - Stephanie Rankin-Turner
- Clean Energy Research Center, University of Yamanashi, 4–3–11 Takeda, Kofu 400–8511, Japan
- Department of Chemistry, Loughborough University, Loughborough, Leicestershire LE11 3TU, United Kingdom
| | - Hiroshi Nonami
- Plant Biophysics/Biochemistry Research Laboratory, Faculty of Agriculture, Ehime University, Matsuyama 790–8566, Japan
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Klapec DJ, Czarnopys G, Pannuto J. Interpol review of detection and characterization of explosives and explosives residues 2016-2019. Forensic Sci Int Synerg 2020; 2:670-700. [PMID: 33385149 PMCID: PMC7770463 DOI: 10.1016/j.fsisyn.2020.01.020] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2020] [Accepted: 01/23/2020] [Indexed: 02/06/2023]
Abstract
This review paper covers the forensic-relevant literature for the analysis and detection of explosives and explosives residues from 2016-2019 as a part of the 19th Interpol International Forensic Science Managers Symposium. The review papers are also available at the Interpol website at: https://www.interpol.int/Resources/Documents#Publications.
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Affiliation(s)
- Douglas J. Klapec
- United States Department of Justice, Bureau of Alcohol, Tobacco, Firearms and Explosives, Forensic Science Laboratory, 6000 Ammendale Road, Ammendale, MD, 20705, USA
| | - Greg Czarnopys
- United States Department of Justice, Bureau of Alcohol, Tobacco, Firearms and Explosives, Forensic Science Laboratory, 6000 Ammendale Road, Ammendale, MD, 20705, USA
| | - Julie Pannuto
- United States Department of Justice, Bureau of Alcohol, Tobacco, Firearms and Explosives, Forensic Science Laboratory, 6000 Ammendale Road, Ammendale, MD, 20705, USA
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Bakels S, Gaigeot MP, Rijs AM. Gas-Phase Infrared Spectroscopy of Neutral Peptides: Insights from the Far-IR and THz Domain. Chem Rev 2020; 120:3233-3260. [PMID: 32073261 PMCID: PMC7146864 DOI: 10.1021/acs.chemrev.9b00547] [Citation(s) in RCA: 34] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
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Gas-phase, double
resonance IR spectroscopy has proven to be an
excellent approach to obtain structural information on peptides ranging
from single amino acids to large peptides and peptide clusters. In
this review, we discuss the state-of-the-art of infrared action spectroscopy
of peptides in the far-IR and THz regime. An introduction to the field
of far-IR spectroscopy is given, thereby highlighting the opportunities
that are provided for gas-phase research on neutral peptides. Current
experimental methods, including spectroscopic schemes, have been reviewed.
Structural information from the experimental far-IR spectra can be
obtained with the help of suitable theoretical approaches such as
dynamical DFT techniques and the recently developed Graph Theory.
The aim of this review is to underline how the synergy between far-IR
spectroscopy and theory can provide an unprecedented picture of the
structure of neutral biomolecules in the gas phase. The far-IR signatures
of the discussed studies are summarized in a far-IR map, in order
to gain insight into the origin of the far-IR localized and delocalized
motions present in peptides and where they can be found in the electromagnetic
spectrum.
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Affiliation(s)
- Sjors Bakels
- Radboud University, Institute for Molecules and Materials, FELIX Laboratory, Toernooiveld 7-c, 6525 ED Nijmegen, The Netherlands
| | - Marie-Pierre Gaigeot
- LAMBE CNRS UMR8587, Université d'Evry val d'Essonne, Blvd F. Mitterrand, Bât Maupertuis, 91025 Evry, France
| | - Anouk M Rijs
- Radboud University, Institute for Molecules and Materials, FELIX Laboratory, Toernooiveld 7-c, 6525 ED Nijmegen, The Netherlands
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García-Rojas NS, Moreno-Pedraza A, Rosas-Román I, Ramírez-Chávez E, Molina-Torres J, Winkler R. Mass spectrometry imaging of thin-layer chromatography plates using laser desorption/low-temperature plasma ionisation. Analyst 2020; 145:3885-3891. [DOI: 10.1039/d0an00446d] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
An open development kit for ambient ionisation enables the fast scanning and visualisation of TLC plates with high lateral resolution.
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Affiliation(s)
| | | | | | | | | | - Robert Winkler
- CINVESTAV Unidad Irapuato
- Department of Biochemistry and Biotechnology
- Mexico
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Usmanov DT, Ninomiya S, Hiraoka K, Wada H, Nakano H, Matsumura M, Sanada-Morimura S, Nonami H. Electrospray Generated from the Tip-Sealed Fine Glass Capillary Inserted with an Acupuncture Needle Electrode. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2018; 29:2297-2304. [PMID: 30238192 DOI: 10.1007/s13361-018-2062-3] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/20/2018] [Revised: 08/03/2018] [Accepted: 08/19/2018] [Indexed: 06/08/2023]
Abstract
In electrospray, excess charges are supplied to a sample solution by the occurrence of electrochemical reactions. Recently, different versions of electrospray, e.g., dielectric barrier electrospray ionization, inductive desorption electrospray ionization, and electrostatic-ionization driven by dielectric polarization, have been reported in which the sample solution was not in direct contact with the metal electrode but separated by dielectric materials. The objective of the current work is to elucidate the mechanism of dielectric barrier electrospray. A sealed borosilicate glass capillary inserted with a fine acupuncture needle was used as a probe. A sample solution (~ 400 nL) was captured on the glass capillary tip and a positive high voltage (HV) pulse (+ 4.5 kV) was applied to the internal metal electrode. Mass spectra were measured as a function of the HV pulse width from μs to 10 s. Ions started to be detected with the pulse width of ~ 5 ms. The ion intensities increased slowly with time and reached a plateau in a few seconds. The charge distribution of cytochrome c [M + nH]n+ shifted to higher n values from a few ms to seconds. In addition to cone-jet mode normal electrospray that lasted until all the liquid sample was depleted from the glass tip, the polarization-induced electrospray ionization was observed at the early stage of the HV application. Graphical Abstract ᅟ.
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Affiliation(s)
- Dilshadbek T Usmanov
- Clean Energy Research Center, University of Yamanashi, 4-3-11, Takeda, Kofu, Yamanashi, 400-8511, Japan
- Institute of Ion-Plasma and Laser Technologies, Durmon Yoli Street 33, Tashkent, Uzbekistan, 100125
| | - Satoshi Ninomiya
- Graduate School, Department of Interdisciplinary Research, University of Yamanashi, 4-3-11, Takeda, Kofu, Yamanashi, 400-8511, Japan
| | - Kenzo Hiraoka
- Clean Energy Research Center, University of Yamanashi, 4-3-11, Takeda, Kofu, Yamanashi, 400-8511, Japan.
| | - Hiroshi Wada
- Kyushu Okinawa Agricultural Research Center, National Agriculture and Food Research Organization, 496 Izumi, Chikugo, Fukuoka, 833-0041, Japan
| | - Hiroshi Nakano
- Kyushu Okinawa Agricultural Research Center, National Agriculture and Food Research Organization, 496 Izumi, Chikugo, Fukuoka, 833-0041, Japan
| | - Masaya Matsumura
- Kyushu Okinawa Agricultural Research Center, National Agriculture and Food Research Organization, Suya 2421, Goshi, Kumamoto, 861-1192, Japan
| | - Sachiyo Sanada-Morimura
- Kyushu Okinawa Agricultural Research Center, National Agriculture and Food Research Organization, Suya 2421, Goshi, Kumamoto, 861-1192, Japan
| | - Hiroshi Nonami
- Plant Biophysics/Biochemistry Research Laboratory, Faculty of Agriculture, Ehime University, Matsuyama, 790-8566, Japan
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Wen R, Zeng D, Yang Z, Jiang L, Ma M, Chen B, van Beek TA. Rapid Analysis of Illegal Cationic Dyes in Foods and Surface Waters Using High Temperature Direct Analysis in Real Time High-Resolution Mass Spectrometry. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2018; 66:7542-7549. [PMID: 29954174 DOI: 10.1021/acs.jafc.8b02388] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
A high temperature desorption (HTD) direct analysis in real time-high-resolution mass spectrometric (DART-HRMS) method was developed for the rapid analysis of four banned cationic dyes. Rhodamine B is used to dye foods, while malachite green, crystal violet, and methylene blue are added to fishponds as antimicrobials. A simple induced phase separation extraction was used to pretreat samples. The DART-HRMS method employed two temperature steps, i.e., 200 °C for drying, purification, and enrichment of sample solution and 500 °C for thermal desorption and ionization of analytes. The calibration curves of dyes in the range of 50-2000 ng/mL were linear using deuterated malachite green as an internal standard. The LODs vary for all analytes between 0.1 and 30 ppb depending on the matrix and experimental conditions. Through analyses of real samples, two chili powders and one chili oil were found to be contaminated by rhodamine B. The concentrations were comparable with those found by an HPLC-MS/MS method.
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Affiliation(s)
- Ruizhi Wen
- Key Laboratory of Phytochemical R&D of Hunan Province and Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research, Ministry of Education , Hunan Normal University , Changsha 410081 , China
- School of Sciences , Central South University of Forestry & Technology , Changsha 410004 , China
| | - Dong Zeng
- Hunan Provincial Center for Disease Control and Prevention , Changsha 410005 , China
| | - Zihui Yang
- Key Laboratory of Phytochemical R&D of Hunan Province and Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research, Ministry of Education , Hunan Normal University , Changsha 410081 , China
| | - Le Jiang
- Key Laboratory of Phytochemical R&D of Hunan Province and Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research, Ministry of Education , Hunan Normal University , Changsha 410081 , China
| | - Ming Ma
- Key Laboratory of Phytochemical R&D of Hunan Province and Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research, Ministry of Education , Hunan Normal University , Changsha 410081 , China
| | - Bo Chen
- Key Laboratory of Phytochemical R&D of Hunan Province and Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research, Ministry of Education , Hunan Normal University , Changsha 410081 , China
| | - Teris A van Beek
- Laboratory of Organic Chemistry , Wageningen University , Stippeneng 4 , 6708 WE Wageningen , The Netherlands
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