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Tang H, Xiang G, Xiao W, Yang Z, Zhao B. Microbial mediated remediation of heavy metals toxicity: mechanisms and future prospects. FRONTIERS IN PLANT SCIENCE 2024; 15:1420408. [PMID: 39100088 PMCID: PMC11294182 DOI: 10.3389/fpls.2024.1420408] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/20/2024] [Accepted: 06/28/2024] [Indexed: 08/06/2024]
Abstract
Heavy metal pollution has become a serious concern across the globe due to their persistent nature, higher toxicity, and recalcitrance. These toxic metals threaten the stability of the environment and the health of all living beings. Heavy metals also enter the human food chain by eating contaminated foods and cause toxic effects on human health. Thus, remediation of HMs polluted soils is mandatory and it needs to be addressed at higher priority. The use of microbes is considered as a promising approach to combat the adverse impacts of HMs. Microbes aided in the restoration of deteriorated environments to their natural condition, with long-term environmental effects. Microbial remediation prevents the leaching and mobilization of HMs and they also make the extraction of HMs simple. Therefore, in this context recent technological advancement allowed to use of bioremediation as an imperative approach to remediate polluted soils. Microbes use different mechanisms including bio-sorption, bioaccumulation, bioleaching, bio-transformation, bio-volatilization and bio-mineralization to mitigate toxic the effects of HMs. Thus, keeping in the view toxic HMs here in this review explores the role of bacteria, fungi and algae in bioremediation of polluted soils. This review also discusses the various approaches that can be used to improve the efficiency of microbes to remediate HMs polluted soils. It also highlights different research gaps that must be solved in future study programs to improve bioremediation efficency.
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Affiliation(s)
- Haiying Tang
- School of Agriculture and Biotechnology, Hunan University of Humanities, Science and Technology, Loudi, China
| | - Guohong Xiang
- School of Agriculture and Biotechnology, Hunan University of Humanities, Science and Technology, Loudi, China
| | - Wen Xiao
- School of Agriculture and Biotechnology, Hunan University of Humanities, Science and Technology, Loudi, China
| | - Zeliang Yang
- School of Agriculture and Biotechnology, Hunan University of Humanities, Science and Technology, Loudi, China
| | - Baoyi Zhao
- Shuangfeng Agriculture and Rural Bureau, Loudi, Hunan, China
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2
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Alabssawy AN, Hashem AH. Bioremediation of hazardous heavy metals by marine microorganisms: a recent review. Arch Microbiol 2024; 206:103. [PMID: 38358529 PMCID: PMC10869373 DOI: 10.1007/s00203-023-03793-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2023] [Revised: 12/09/2023] [Accepted: 12/11/2023] [Indexed: 02/16/2024]
Abstract
Heavy metals (HMs) like Zn, Cu, Pb, Ni, Cd, and Hg, among others, play a role in several environmental problems. The marine environment is polluted by several contaminants, such as HMs. A variety of physico-chemical methods usually available for sanitation HMs remediation suffer from either limitation. Bioremediation is a promising way of dealing with HMs pollution. Microbes have the ability with various potencies to resist HMs tension. The current review discusses the main sources and influences of HMs, the role of marine microorganisms in HMs bioremediation, as well as the microbial mechanisms for HMs detoxification and transformation. This review paper aims to provide an overview of the bioremediation technologies that are currently available for the removal of HMs ions from industrial and urban effluent by aquatic organisms such as bacteria, fungi, and microalgae, particularly those that are isolated from marine areas. The primary goals are to outline various studies and offer helpful information about the most important aspects of the bioelimination techniques. The biotreatment practices have been primarily divided into three techniques based on this topic. They are biosorption, bioaccumulation, bioleaching, and biotransformation. This article gives the brief view on the research studies about bioremediation of HMs using marine microorganisms. The current review also deals with the critical issues and recent studies based on the HMs biodetoxification using aquatic microorganisms.
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Affiliation(s)
- Ahmed N Alabssawy
- Marine Science and Fishes Branch, Zoology Department, Faculty of Science, Al-Azhar University, Cairo, 11884, Egypt.
| | - Amr H Hashem
- Botany and Microbiology Department, Faculty of Science, Al-Azhar University, Nasr City, Cairo, 11884, Egypt.
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3
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Mathur M, Rawat N, Saxena T, Khandelwal R, Jain N, Sharma MK, Mohan MK, Bhatnagar P, Flora SJS, Kaushik P. Effect of Arsenic on Fluoride Tolerance in Microbacterium paraoxydans Strain IR-1. TOXICS 2023; 11:945. [PMID: 37999597 PMCID: PMC10675054 DOI: 10.3390/toxics11110945] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/26/2023] [Revised: 10/30/2023] [Accepted: 11/09/2023] [Indexed: 11/25/2023]
Abstract
Fluoride (F) and arsenic (As) are two major contaminants of water and soil systems around the globe, causing potential toxicity to humans, plants, animals, and microbes. These contaminated soil systems can be restored by microorganisms that can tolerate toxic stress and provide rapid mineralization of soil, organic matter, and contaminants, using various tolerance mechanisms. Thus, the present study was undertaken with the arsenic hyper-tolerant bacterium Microbacterium paraoxydans strain IR-1 to determine its tolerance and toxicity to increasing doses of fluoride, either individually or in combination with arsenic, in terms of growth inhibition using a toxicity unit model. The minimum inhibitory concentration (MIC)and half maximal inhibitory concentration (IC50) values for fluoride increased, from 9 g/L to 11 g/L and from 5.91 ± 0.1 g/L to 6.32 ± 0.028 g/L, respectively, in the combination (F + As) group. The statistical comparison of observed and expected additive toxicities, with respect to toxicity unit (TU difference), using Student's t-test, was found to be highly significant (p < 0.001). This suggests the antagonistic effect of arsenic on fluoride toxicity to the strain IR-1. The unique stress tolerance of IR-1 ensures its survival as well as preponderance in fluoride and arsenic co-contaminated sites, thus paving the way for its possible application in the natural or artificial remediation of toxicant-exposed degraded soil systems.
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Affiliation(s)
- Megha Mathur
- Applied Microbiology Laboratory, Centre for Rural Development and Technology, Indian Institute of Technology, Delhi 110016, India;
| | - Neha Rawat
- Department of Life Sciences, IIS University, Mansarovar, Jaipur 302020, India (P.B.)
| | - Tanushree Saxena
- Department of Life Sciences, IIS University, Mansarovar, Jaipur 302020, India (P.B.)
| | - Renu Khandelwal
- Centre for Advanced Studies, Department of Zoology, University of Rajasthan, Jaipur 302004, India
| | - Neha Jain
- Centre for Advanced Studies, Department of Zoology, University of Rajasthan, Jaipur 302004, India
| | - Mukesh K. Sharma
- Department of Zoology, S.P.C., Government College, Ajmer 305001, India
| | - Medicherla K. Mohan
- Department of Biotechnology and Bioinformatics, Birla Institute of Scientific Research, C Scheme, Jaipur 302001, India;
| | - Pradeep Bhatnagar
- Department of Life Sciences, IIS University, Mansarovar, Jaipur 302020, India (P.B.)
| | - Swaran J. S. Flora
- National Institute of Pharmaceutical Education and Research-Raebareli, Lucknow 226002, India
| | - Pallavi Kaushik
- Centre for Advanced Studies, Department of Zoology, University of Rajasthan, Jaipur 302004, India
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Zhang P, Yang M, Lan J, Huang Y, Zhang J, Huang S, Yang Y, Ru J. Water Quality Degradation Due to Heavy Metal Contamination: Health Impacts and Eco-Friendly Approaches for Heavy Metal Remediation. TOXICS 2023; 11:828. [PMID: 37888679 PMCID: PMC10611083 DOI: 10.3390/toxics11100828] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/24/2023] [Revised: 09/09/2023] [Accepted: 09/20/2023] [Indexed: 10/28/2023]
Abstract
Water quality depends on its physicochemical and biological parameters. Changes in parameters such as pH, temperature, and essential and non-essential trace metals in water can render it unfit for human use. Moreover, the characteristics of the local environment, geological processes, geochemistry, and hydrological properties of water sources also affect water quality. Generally, groundwater is utilized for drinking purposes all over the globe. The surface is also utilized for human use and industrial purposes. There are several natural and anthropogenic activities responsible for the heavy metal contamination of water. Industrial sources, including coal washery, steel industry, food processing industry, plastic processing, metallic work, leather tanning, etc., are responsible for heavy metal contamination in water. Domestic and agricultural waste is also responsible for hazardous metallic contamination in water. Contaminated water with heavy metal ions like Cr (VI), Cd (II), Pb (II), As (V and III), Hg (II), Ni (II), and Cu (II) is responsible for several health issues in humans, like liver failure, kidney damage, gastric and skin cancer, mental disorders and harmful effects on the reproductive system. Hence, the evaluation of heavy metal contamination in water and its removal is needed. There are several physicochemical methods that are available for the removal of heavy metals from water, but these methods are expensive and generate large amounts of secondary pollutants. Biological methods are considered cost-effective and eco-friendly methods for the remediation of metallic contaminants from water. In this review, we focused on water contamination with toxic heavy metals and their toxicity and eco-friendly bioremediation approaches.
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Affiliation(s)
- Peng Zhang
- School of Hydraulic Engineering, Wanjiang University of Technology, Ma’anshan 243031, China; (M.Y.); (J.L.); (Y.H.); (J.Z.); (S.H.); (Y.Y.)
- College of Hydrology and Water Resources, Hohai University, Nanjing 210098, China
| | - Mingjie Yang
- School of Hydraulic Engineering, Wanjiang University of Technology, Ma’anshan 243031, China; (M.Y.); (J.L.); (Y.H.); (J.Z.); (S.H.); (Y.Y.)
- College of Hydrology and Water Resources, Hohai University, Nanjing 210098, China
| | - Jingjing Lan
- School of Hydraulic Engineering, Wanjiang University of Technology, Ma’anshan 243031, China; (M.Y.); (J.L.); (Y.H.); (J.Z.); (S.H.); (Y.Y.)
| | - Yan Huang
- School of Hydraulic Engineering, Wanjiang University of Technology, Ma’anshan 243031, China; (M.Y.); (J.L.); (Y.H.); (J.Z.); (S.H.); (Y.Y.)
| | - Jinxi Zhang
- School of Hydraulic Engineering, Wanjiang University of Technology, Ma’anshan 243031, China; (M.Y.); (J.L.); (Y.H.); (J.Z.); (S.H.); (Y.Y.)
| | - Shuangshuang Huang
- School of Hydraulic Engineering, Wanjiang University of Technology, Ma’anshan 243031, China; (M.Y.); (J.L.); (Y.H.); (J.Z.); (S.H.); (Y.Y.)
| | - Yashi Yang
- School of Hydraulic Engineering, Wanjiang University of Technology, Ma’anshan 243031, China; (M.Y.); (J.L.); (Y.H.); (J.Z.); (S.H.); (Y.Y.)
| | - Junjie Ru
- School of Hydraulic Engineering, Wanjiang University of Technology, Ma’anshan 243031, China; (M.Y.); (J.L.); (Y.H.); (J.Z.); (S.H.); (Y.Y.)
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Sun Y, Jin J, Li W, Zhang S, Wang F. Hexavalent chromium removal by a resistant strain Bacillus cereus ZY-2009. ENVIRONMENTAL TECHNOLOGY 2023; 44:1926-1935. [PMID: 34882507 DOI: 10.1080/09593330.2021.2016994] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/19/2021] [Accepted: 12/03/2021] [Indexed: 05/25/2023]
Abstract
Bioreduction of Cr(VI) to Cr(III) by reducing microbes has attracted increasing concern. Here, Cr(VI) removal capacity of a Cr(VI)-resistant bacterium isolated from activated sludge was investigated. Based on its physio-biochemical attributes and 16S rDNA sequence analysis, the strain was identified as Bacillus cereus ZY-2009. It grew normally in the media containing 10-100 mg/L Cr(VI), indicating its high resistance to Cr(VI). Under the optimal conditions of pH 7.0, inoculation amount 10%, and temperature 30°C, Cr(VI) was effectively removed, with a removal rate of ∼80%. Co-existing Fe3+ and Cu2+ greatly increased Cr(VI) removal, but Cd2+ showed significant inhibition. Cr(VI) was removed mainly via enzyme-mediated bioreduction but not biosorption. Cr(VI) was reduced by different cell fractions (i.e. extracellular secretions, cytoplasm, and cell envelope), implying that Cr(VI) can be reduced both extracellularly and intracellularly. This strain can be used in the bioremediation of Cr(VI)-containing wastewater, with Fe3+ and Cu2+ as stimulators.
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Affiliation(s)
- Yuhuan Sun
- College of Environment and Safety Engineering, Qingdao University of Science and Technology, Qingdao, People's Republic of China
| | - Jianyong Jin
- College of Environment and Safety Engineering, Qingdao University of Science and Technology, Qingdao, People's Republic of China
| | - Wenguang Li
- College of Environment and Safety Engineering, Qingdao University of Science and Technology, Qingdao, People's Republic of China
| | - Shuwu Zhang
- College of Environment and Safety Engineering, Qingdao University of Science and Technology, Qingdao, People's Republic of China
| | - Fayuan Wang
- College of Environment and Safety Engineering, Qingdao University of Science and Technology, Qingdao, People's Republic of China
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Tang Y, Wu Z, Zhang Y, Wang C, Ma X, Zhang K, Pan R, Cao Y, Zhou X. Cultivation-dependent and cultivation-independent investigation of O-methylated pollutant-producing bacteria in three drinking water treatment plants. WATER RESEARCH 2023; 231:119618. [PMID: 36706470 DOI: 10.1016/j.watres.2023.119618] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/26/2022] [Revised: 01/12/2023] [Accepted: 01/15/2023] [Indexed: 06/18/2023]
Abstract
O-methylated pollutants (OMPs) are emerging contaminants in drinking water and mainly produced through bacterial O-methylation. However, the information of OMP-producing bacteria (OMPPB) in drinking water treatment plant (DWTP) is largely unknown so far. In this study, the OMPPB in water samples from three DWTPs (XL, JX and NX) were investigated by using cultivation-dependent and cultivation-independent technologies. Four OMPs were detected and their odor and toxicity risks were assessed. Formation potentials (FPs) of 2,4,6-trichloanisole, 2,3,6-trichloanisole, 2,4,6-tribromoanisole, pentachloroanisole and diclofenac methyl ester were determined in water samples and their values shifted significantly among DWTPs. A most probable number (MPN) method was established to quantify OMPPB numbers and the relationships between total haloanisole FPs (HAFPs) (y) and OMPPB numbers (x) in three DWTPs could be described by the following functions: y = 0.496×0.373 (XL), y = 0.041×0.465 (JX) and y = 0.218×0.237 (NX). Several genera like Bacillus, Ralstonia, Brevundimonas, etc. were newly found OMPPB among the cultivable bacteria, and their OMP products were evaluated in terms of quantity and environment risks (odor, toxicity and bioaccumulation). High-throughput sequencing revealed treatment process was the main driving factor to shape the OMPPB community structures and Mantel test showed HAFP profile was significantly influenced by Mycobacterium and Pelomonas. PICURSt2 analysis discovered four phenolic O-methyltransferases (OMTs) and four carboxylic OMTs which might be responsible for OMP formation. Several strategies were recommended to assess risk and control contamination brought by OMPPB in DWTPs.
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Affiliation(s)
- Yiran Tang
- College of Environment and Resources, College of Carbon Neutral, Zhejiang Agriculture and Forestry University, Hangzhou, Zhejiang 311300, China
| | - Zhixuan Wu
- College of Environment and Resources, College of Carbon Neutral, Zhejiang Agriculture and Forestry University, Hangzhou, Zhejiang 311300, China
| | - Yanfen Zhang
- College of Environment and Resources, College of Carbon Neutral, Zhejiang Agriculture and Forestry University, Hangzhou, Zhejiang 311300, China
| | - Chuanxuan Wang
- College of Environment and Resources, College of Carbon Neutral, Zhejiang Agriculture and Forestry University, Hangzhou, Zhejiang 311300, China
| | - Xuelian Ma
- College of Environment and Resources, College of Carbon Neutral, Zhejiang Agriculture and Forestry University, Hangzhou, Zhejiang 311300, China
| | - Kejia Zhang
- College of Civil Engineering and Architecture, Zhejiang University, Hangzhou, Zhejiang 310058, China
| | - Renjie Pan
- State Key Laboratory of Pollution Control and Resource Reuse, Key Laboratory of Yangtze Water Environment, Ministry of Education, College of Environmental Science and Engineering, Tongji University, Shanghai 200092, China
| | - Yucheng Cao
- College of Environment and Resources, College of Carbon Neutral, Zhejiang Agriculture and Forestry University, Hangzhou, Zhejiang 311300, China
| | - Xinyan Zhou
- College of Environment and Resources, College of Carbon Neutral, Zhejiang Agriculture and Forestry University, Hangzhou, Zhejiang 311300, China.
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Singh V, Singh N, Rai SN, Kumar A, Singh AK, Singh MP, Sahoo A, Shekhar S, Vamanu E, Mishra V. Heavy Metal Contamination in the Aquatic Ecosystem: Toxicity and Its Remediation Using Eco-Friendly Approaches. TOXICS 2023; 11:toxics11020147. [PMID: 36851022 PMCID: PMC9968000 DOI: 10.3390/toxics11020147] [Citation(s) in RCA: 26] [Impact Index Per Article: 26.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/19/2022] [Revised: 01/24/2023] [Accepted: 02/01/2023] [Indexed: 06/01/2023]
Abstract
Urbanization and industrialization are responsible for environmental contamination in the air, water, and soil. These activities also generate large amounts of heavy metal ions in the environment, and these contaminants cause various types of health issues in humans and other animals. Hexavalent chromium, lead, and cadmium are toxic heavy metal ions that come into the environment through several industrial processes, such as tanning, electroplating, coal mining, agricultural activities, the steel industry, and chrome plating. Several physical and chemical methods are generally used for the heavy metal decontamination of wastewater. These methods have some disadvantages, including the generation of secondary toxic sludge and high operational costs. Hence, there is a need to develop a cost-effective and eco-friendly method for the removal of heavy metal ions from polluted areas. Biological methods are generally considered eco-friendly and cost-effective. This review focuses on heavy metal contamination, its toxicity, and eco-friendly approaches for the removal of heavy metals from contaminated sites.
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Affiliation(s)
- Veer Singh
- Department of Biochemistry, Rajendra Memorial Research Institute of Medical Sciences, Patna 800007, India
- School of Biochemical Engineering, Indian Institute of Technology, Banaras Hindu University, Varanasi 221005, India
| | - Nidhi Singh
- Centre of Bioinformatics, University of Allahabad, Prayagraj 211002, India
| | - Sachchida Nand Rai
- Centre of Biotechnology, University of Allahabad, Prayagraj 211002, India
| | - Ashish Kumar
- Department of Biochemistry, Rajendra Memorial Research Institute of Medical Sciences, Patna 800007, India
| | - Anurag Kumar Singh
- Centre of Experimental Medicine & Surgery, Institute of Medical Sciences, Banaras Hindu University, Varanasi 221005, India
| | - Mohan P. Singh
- Centre of Biotechnology, University of Allahabad, Prayagraj 211002, India
| | - Ansuman Sahoo
- Department of Botany, Banaras Hindu University, Varanasi 221005, India
| | | | - Emanuel Vamanu
- Faculty of Biotechnology, University of Agricultural Sciences and Veterinary Medicine of Bucharest, Bucharest 011464, Romania
| | - Vishal Mishra
- School of Biochemical Engineering, Indian Institute of Technology, Banaras Hindu University, Varanasi 221005, India
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Kao CM, Chen SC, Liao ZY, Wen SS, Chien CC. Characterization of two chromate reducing bacteria isolated from heavy metal contaminated soil. Biologia (Bratisl) 2021. [DOI: 10.1007/s11756-021-00933-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Gong WJ, Wang XR, Zhao HP. Microbial reduction of Cr(VI) in the presence of Ni, Cu and Zn by bacterial consortium enriched from an electroplating contaminated site. Biodegradation 2021; 32:711-722. [PMID: 34528116 DOI: 10.1007/s10532-021-09962-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2021] [Accepted: 09/09/2021] [Indexed: 11/30/2022]
Abstract
The bioremediation of Cr(VI) has been intensively reported in recent years, while little information about Cr(VI)-reducing consortium enriched from in-situ contaminated soil has been revealed, specifically the functional genes involved. In this study, we verified a Cr(VI) reduction process by a consortium enriched from in-situ contaminated soil through enzymatic analysis. The chromate reductase gene ChrR has been successfully amplified and further analyzed, provided solid evidence to prove the Cr(VI) bio-reduction was an enzyme-mediated process. Meanwhile, the analysis of metabolic pathways demonstrates that the consortium could detoxicate and resist Cr(VI) and co-existing metals (Ni2+, Zn2+ and Cu2+) through membrane transport and DNA repair process. The co-existing heavy metals Zn and Cu had a relatively significant negative and positive effects on Cr(VI) reduction respectively, which may play important roles in the Cr(VI) contaminated soil bioremediation.
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Affiliation(s)
- Wen-Jing Gong
- MOE Key Lab of Environmental Remediation and Ecosystem Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, Zhejiang, China
| | - Xing-Run Wang
- Chinese Research Academy of Environmental Sciences, Beijing, 100012, China
| | - He-Ping Zhao
- MOE Key Lab of Environmental Remediation and Ecosystem Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, Zhejiang, China.
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Mitra M, Nguyen KMAK, Box TW, Berry TL, Fujita M. Isolation and characterization of a heavy metal- and antibiotic-tolerant novel bacterial strain from a contaminated culture plate of Chlamydomonas reinhardtii, a green micro-alga. F1000Res 2021; 10:533. [PMID: 34540203 PMCID: PMC8424464 DOI: 10.12688/f1000research.53779.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Accepted: 06/24/2021] [Indexed: 11/04/2023] Open
Abstract
Background:Chlamydomonas reinhardtii, a green micro-alga, is normally cultured in laboratories in Tris-Acetate Phosphate (TAP), a medium which contains acetate as the sole carbon source. Acetate in TAP can lead to occasional bacterial and fungal contamination. We isolated a yellow-pigmented bacterium from a Chlamydomonas TAP plate. It was named Clip185 based on the Chlamydomonas strain plate it was isolated from. In this article we present our work on the isolation, taxonomic identification and physiological and biochemical characterizations of Clip185. Methods: We measured sensitivities of Clip185 to five antibiotics and performed standard microbiological tests to characterize it. We partially sequenced the 16S rRNA gene of Clip185. We identified the yellow pigment of Clip185 by spectrophotometric analyses. We tested tolerance of Clip185 to six heavy metals by monitoring its growth on Lysogeny Broth (LB) media plates containing 0.5 mM -10 mM concentrations of six different heavy metals. Results: Clip185 is an aerobic, gram-positive rod, oxidase-negative, mesophilic, alpha-hemolytic bacterium. It can ferment glucose, sucrose and mannitol. It is starch hydrolysis-positive. It is very sensitive to vancomycin but resistant to penicillin and other bacterial cell membrane- and protein synthesis-disrupting antibiotics. Clip185 produces a C50 carotenoid, decaprenoxanthin, which is a powerful anti-oxidant with a commercial demand. Decaprenoxanthin production is induced in Clip185 under light. NCBI-BLAST analyses of the partial 16S rRNA gene sequence of Clip185 revealed a 99% sequence identity to that of Microbacterium binotii strain PK1-12M and Microbacterium sp. strain MDP6. Clip185 is able to tolerate toxic concentrations of six heavy metals. Conclusions: Our results show that Clip185 belongs to the genus Microbacterium. In the future, whole genome sequencing of Clip185 will clarify if Clip185 is a new Microbacterium species or a novel strain of Microbacterium binotii, and will reveal its genes involved in antibiotic-resistance, heavy-metal tolerance and regulation of decaprenoxanthin biosynthesis.
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Affiliation(s)
- Mautusi Mitra
- Department of Mathematics, Sciences and Technology, University of West Georgia, Carrollton, Georgia, 30118, USA
| | - Kevin Manoap-Anh-Khoa Nguyen
- Department of Mathematics, Sciences and Technology, University of West Georgia, Carrollton, Georgia, 30118, USA
- Department of Mechanical Engineering, Kennesaw State University, Marietta, Georgia, 30060, USA
| | - Taylor Wayland Box
- Department of Mathematics, Sciences and Technology, University of West Georgia, Carrollton, Georgia, 30118, USA
| | - Taylor Lynne Berry
- Carrollton High School, Carrollton, Georgia, 30117, USA
- Department of Chemistry and Biochemistry, University of North Georgia, Dahlonega, Georgia, 30597, USA
| | - Megumi Fujita
- Department of Mathematics, Sciences and Technology, University of West Georgia, Carrollton, Georgia, 30118, USA
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Mitra M, Nguyen KMAK, Box TW, Berry TL, Fujita M. Isolation and characterization of a heavy metal- and antibiotic-tolerant novel bacterial strain from a contaminated culture plate of Chlamydomonas reinhardtii, a green micro-alga. F1000Res 2021; 10:533. [PMID: 34540203 PMCID: PMC8424464 DOI: 10.12688/f1000research.53779.2] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Accepted: 08/27/2021] [Indexed: 11/20/2022] Open
Abstract
Background:Chlamydomonas reinhardtii, a green micro-alga, is normally cultured in laboratories in Tris-Acetate Phosphate (TAP), a medium which contains acetate as the sole carbon source. Acetate in TAP can lead to occasional bacterial and fungal contamination. We isolated a yellow-pigmented bacterium from a Chlamydomonas TAP plate. It was named Clip185 based on the Chlamydomonas strain plate it was isolated from. In this article we present our work on the isolation, taxonomic identification and physiological and biochemical characterizations of Clip185. Methods: We measured sensitivities of Clip185 to five antibiotics and performed standard microbiological tests to characterize it. We partially sequenced the 16S rRNA gene of Clip185. We identified the yellow pigment of Clip185 by spectrophotometric analyses. We tested tolerance of Clip185 to six heavy metals by monitoring its growth on Lysogeny Broth (LB) media plates containing 0.5 mM -10 mM concentrations of six different heavy metals. Results: Clip185 is an aerobic, gram-positive rod, oxidase-negative, mesophilic, alpha-hemolytic bacterium. It can ferment glucose, sucrose and mannitol. It is starch hydrolysis-positive. It is very sensitive to vancomycin but resistant to penicillin and other bacterial cell membrane- and protein synthesis-disrupting antibiotics. Clip185 produces a C50 carotenoid, decaprenoxanthin, which is a powerful anti-oxidant with a commercial demand. Decaprenoxanthin production is induced in Clip185 under light. NCBI-BLAST analyses of the partial 16S rRNA gene sequence of Clip185 revealed a 99% sequence identity to that of Microbacterium binotii strain PK1-12M and Microbacterium sp. strain MDP6. Clip185 is able to tolerate toxic concentrations of six heavy metals. Conclusions: Our results show that Clip185 belongs to the genus Microbacterium. In the future, whole genome sequencing of Clip185 will clarify if Clip185 is a new Microbacterium species or a novel strain of Microbacterium binotii, and will reveal its genes involved in antibiotic-resistance, heavy-metal tolerance and regulation of decaprenoxanthin biosynthesis.
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Affiliation(s)
- Mautusi Mitra
- Department of Mathematics, Sciences and Technology, University of West Georgia, Carrollton, Georgia, 30118, USA
| | - Kevin Manoap-Anh-Khoa Nguyen
- Department of Mathematics, Sciences and Technology, University of West Georgia, Carrollton, Georgia, 30118, USA
- Department of Mechanical Engineering, Kennesaw State University, Marietta, Georgia, 30060, USA
| | - Taylor Wayland Box
- Department of Mathematics, Sciences and Technology, University of West Georgia, Carrollton, Georgia, 30118, USA
| | - Taylor Lynne Berry
- Carrollton High School, Carrollton, Georgia, 30117, USA
- Department of Chemistry and Biochemistry, University of North Georgia, Dahlonega, Georgia, 30597, USA
| | - Megumi Fujita
- Department of Mathematics, Sciences and Technology, University of West Georgia, Carrollton, Georgia, 30118, USA
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12
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Corretto E, Antonielli L, Sessitsch A, Höfer C, Puschenreiter M, Widhalm S, Swarnalakshmi K, Brader G. Comparative Genomics of Microbacterium Species to Reveal Diversity, Potential for Secondary Metabolites and Heavy Metal Resistance. Front Microbiol 2020; 11:1869. [PMID: 32903828 PMCID: PMC7438953 DOI: 10.3389/fmicb.2020.01869] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2020] [Accepted: 07/16/2020] [Indexed: 12/11/2022] Open
Abstract
Microbacterium species have been isolated from a wide range of hosts and environments, including heavy metal-contaminated sites. Here, we present a comprehensive analysis on the phylogenetic distribution and the genetic potential of 70 Microbacterium belonging to 20 different species isolated from heavy metal-contaminated and non-contaminated sites with particular attention to secondary metabolites gene clusters. The analyzed Microbacterium species are divided in three main functional clades. They share a small core genome (331 gene families covering basic functions) pointing to high genetic diversity. The most common secondary metabolite gene clusters encode pathways for the production of terpenoids, type III polyketide synthases and non-ribosomal peptide synthetases, potentially responsible of the synthesis of siderophore-like compounds. In vitro tests showed that many Microbacterium strains produce siderophores, ACC deaminase, auxins (IAA) and are able to solubilize phosphate. Microbacterium isolates from heavy metal contaminated sites are on average more resistant to heavy metals and harbor more genes related to metal homeostasis (e.g., metalloregulators). On the other hand, the ability to increase the metal mobility in a contaminated soil through the secretion of specific molecules seems to be widespread among all. Despite the widespread capacity of strains to mobilize several metals, plants inoculated with selected Microbacterium isolates showed only slightly increased iron concentrations, whereas concentrations of zinc, cadmium and lead were decreased.
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Affiliation(s)
- Erika Corretto
- Bioresouces Unit, Center for Health & Bioresources, AIT Austrian Institute of Technology GmbH, Tulln, Austria
| | - Livio Antonielli
- Bioresouces Unit, Center for Health & Bioresources, AIT Austrian Institute of Technology GmbH, Tulln, Austria
| | - Angela Sessitsch
- Bioresouces Unit, Center for Health & Bioresources, AIT Austrian Institute of Technology GmbH, Tulln, Austria
| | - Christoph Höfer
- Institute of Soil Research, Department of Forest- and Soil Sciences, University of Natural Resources and Life Sciences, Vienna, Austria
| | - Markus Puschenreiter
- Institute of Soil Research, Department of Forest- and Soil Sciences, University of Natural Resources and Life Sciences, Vienna, Austria
| | - Siegrid Widhalm
- Bioresouces Unit, Center for Health & Bioresources, AIT Austrian Institute of Technology GmbH, Tulln, Austria
| | | | - Günter Brader
- Bioresouces Unit, Center for Health & Bioresources, AIT Austrian Institute of Technology GmbH, Tulln, Austria
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13
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Ouertani R, Ouertani A, Mahjoubi M, Bousselmi Y, Najjari A, Cherif H, Chamkhi A, Mosbah A, Khdhira H, Sghaier H, Chouchane H, Cherif A, Neifar M. New Plant Growth-Promoting, Chromium-Detoxifying Microbacterium Species Isolated From a Tannery Wastewater: Performance and Genomic Insights. Front Bioeng Biotechnol 2020; 8:521. [PMID: 32719777 PMCID: PMC7350417 DOI: 10.3389/fbioe.2020.00521] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2020] [Accepted: 05/01/2020] [Indexed: 12/31/2022] Open
Abstract
Hexavalent chromium [Cr(VI)], widely generated by tannery activities, is considered among the most toxic substances and causes a serious damage for the environment and for human health. Interestingly, some microorganisms have a potential of bioremediation of chromium-contaminated wastewaters and soils through the reduction of Cr(VI) (soluble and harmful form) into Cr(III) (stable and non-toxic form). Here, we present the full genome sequence of a novel heavy-metal-resistant, plant growth-promoting bacterium (PGPB), Microbacterium metallidurans TL13, which was isolated from a Tunisian leather industry. The strain TL13 was resistant to many heavy metals, such as chromium, copper, nickel, cobalt, and arsenic. The 50% TL13 growth inhibitory concentration (IC50) values of HgCl2, CoCl2, K2Cr2O7, CuSO4, NiCl2, FeSO4, and Na2HAsO4 are 368, 445, 676, 1,590, 1,680, 4,403, and 7,007 mg/L, respectively, with the following toxicity order: HgCl2 > CoCl2 > K2Cr2O7 > CuSO4 > NiCl2 > FeSO4 > Na2HAsO4. This new strain was also able to promote the growth of the hybrid tomato (Elika F1) under chromium metal stress. Its whole genome sequence length was estimated to be 3,587,460 bp (3,393 coding sequences) with a G + C content of 70.7%. Functional annotation of the genome of TL13 revealed the presence of open reading frames (ORFs) involved in adaptation to metal stress, such as the chromate transport protein, cobalt–zinc–cadmium resistance protein, copper resistance protein, copper responsive transcriptional regulator, multidrug resistance transporters, arsenical resistance operon repressor, arsenate reductase, arsenic resistance protein, mercuric resistance operon regulatory protein, mercuric ion reductase, and organomercurial lyase. Moreover, genes for the production of glutathione peroxidase, catalase, superoxide dismutase, and thioredoxin reductase, which confer a higher tolerance to oxidative/metal stresses, were identified in TL13 genome. In addition, genes for heat shock tolerance, cold shock tolerance, glycine-betaine production, mineral phosphate solubilization, ammonia assimilation, siderophores, exopolysaccharides, polyketides, and lytic enzymes (cellulase, chitinase, and proteases) production that enable bacteria to survive biotic/abiotic stress and to promote plant growth and health were also revealed. Based on genome analysis and experimental approaches, strain TL13 appears to have evolved from various metabolic strategies and could play a role in ensuring sustainable environmental and agricultural systems.
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Affiliation(s)
- Rania Ouertani
- Univ. Manouba, ISBST, BVBGR-LR11ES31, Biotechpole Sidi Thabet, Sidi Thabet, Tunisia.,Laboratory of Microorganisms and Active Biomolecules, MBA-LR03ES03, Faculty of Sciences of Tunis, University of Tunis El Manar, Tunis, Tunisia
| | - Awatef Ouertani
- Univ. Manouba, ISBST, BVBGR-LR11ES31, Biotechpole Sidi Thabet, Sidi Thabet, Tunisia
| | - Mouna Mahjoubi
- Univ. Manouba, ISBST, BVBGR-LR11ES31, Biotechpole Sidi Thabet, Sidi Thabet, Tunisia
| | - Yosra Bousselmi
- Univ. Manouba, ISBST, BVBGR-LR11ES31, Biotechpole Sidi Thabet, Sidi Thabet, Tunisia
| | - Afef Najjari
- Laboratory of Microorganisms and Active Biomolecules, MBA-LR03ES03, Faculty of Sciences of Tunis, University of Tunis El Manar, Tunis, Tunisia
| | - Hanene Cherif
- Univ. Manouba, ISBST, BVBGR-LR11ES31, Biotechpole Sidi Thabet, Sidi Thabet, Tunisia
| | - Asma Chamkhi
- Univ. Manouba, ISBST, BVBGR-LR11ES31, Biotechpole Sidi Thabet, Sidi Thabet, Tunisia
| | - Amor Mosbah
- Univ. Manouba, ISBST, BVBGR-LR11ES31, Biotechpole Sidi Thabet, Sidi Thabet, Tunisia
| | - Hechmi Khdhira
- Management Environment Responsible in Tanneries Mégisseries du Maghreb, TMM, Grombalia, Tunisia
| | - Haitham Sghaier
- Univ. Manouba, ISBST, BVBGR-LR11ES31, Biotechpole Sidi Thabet, Sidi Thabet, Tunisia.,Laboratory "Energy and Matter for Development of Nuclear Sciences" (LR16CNSTN02), National Center for Nuclear Sciences and Technology (CNSTN), Sidi Thabet Technopark, Sidi Thabet, Tunisia
| | - Habib Chouchane
- Univ. Manouba, ISBST, BVBGR-LR11ES31, Biotechpole Sidi Thabet, Sidi Thabet, Tunisia
| | - Ameur Cherif
- Univ. Manouba, ISBST, BVBGR-LR11ES31, Biotechpole Sidi Thabet, Sidi Thabet, Tunisia
| | - Mohamed Neifar
- Univ. Manouba, ISBST, BVBGR-LR11ES31, Biotechpole Sidi Thabet, Sidi Thabet, Tunisia
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14
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Genome-scale metabolic models of Microbacterium species isolated from a high altitude desert environment. Sci Rep 2020; 10:5560. [PMID: 32221328 PMCID: PMC7101325 DOI: 10.1038/s41598-020-62130-8] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2019] [Accepted: 02/28/2020] [Indexed: 01/09/2023] Open
Abstract
The Atacama Desert is the most arid desert on Earth, focus of important research activities related to microbial biodiversity studies. In this context, metabolic characterization of arid soil bacteria is crucial to understand their survival strategies under extreme environmental stress. We investigated whether strain-specific features of two Microbacterium species were involved in the metabolic ability to tolerate/adapt to local variations within an extreme desert environment. Using an integrative systems biology approach we have carried out construction and comparison of genome-scale metabolic models (GEMs) of two Microbacterium sp., CGR1 and CGR2, previously isolated from physicochemically contrasting soil sites in the Atacama Desert. Despite CGR1 and CGR2 belong to different phylogenetic clades, metabolic pathways and attributes are highly conserved in both strains. However, comparison of the GEMs showed significant differences in the connectivity of specific metabolites related to pH tolerance and CO2 production. The latter is most likely required to handle acidic stress through decarboxylation reactions. We observed greater GEM connectivity within Microbacterium sp. CGR1 compared to CGR2, which is correlated with the capacity of CGR1 to tolerate a wider pH tolerance range. Both metabolic models predict the synthesis of pigment metabolites (β-carotene), observation validated by HPLC experiments. Our study provides a valuable resource to further investigate global metabolic adaptations of bacterial species to grow in soils with different abiotic factors within an extreme environment.
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15
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Successive use of microorganisms to remove chromium from wastewater. Appl Microbiol Biotechnol 2020; 104:3729-3743. [DOI: 10.1007/s00253-020-10533-y] [Citation(s) in RCA: 37] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2020] [Revised: 02/28/2020] [Accepted: 03/09/2020] [Indexed: 12/18/2022]
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16
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Banerjee S, Misra A, Chaudhury S, Dam B. A Bacillus strain TCL isolated from Jharia coalmine with remarkable stress responses, chromium reduction capability and bioremediation potential. JOURNAL OF HAZARDOUS MATERIALS 2019; 367:215-223. [PMID: 30594722 DOI: 10.1016/j.jhazmat.2018.12.038] [Citation(s) in RCA: 59] [Impact Index Per Article: 11.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/13/2018] [Revised: 12/10/2018] [Accepted: 12/12/2018] [Indexed: 06/09/2023]
Abstract
Microbial reduction of Cr(VI) to Cr(III) can mitigate environmental chromium toxicity. A chromium, cadmium and nickel tolerating strain TCL with 97% 16S rRNA gene sequence homology to Bacillus cereus was isolated from a derelict open-cast, Tasra Coalmine Lake of Jharia, India. It could tolerate up to Cr2000 [2,000 mg L-1 Cr(VI)] and completely reduce Cr200 within 16 h under heterotrophic condition. TCL grown in ≥ Cr500 exhibited multifarious stress responses particularly in its prolonged lag-phase, like cell aggregation, up to two-fold elongation, increased exopolysaccharide production, and stress enzyme activities. These were relieved by increasing inoculum size or nutrient content. Chromium reduction was constitutive, with maximum activities detected in loosely-bound exopolysaccharides and membrane fractions, followed by cytoplasm and spent media. Cr(VI) was efficiently reduced to Cr(III) and >90% was released in spent media. Cells also expressed Cr-induced active efflux pumps. Growing cells or its crude enzyme extracts could efficiently reduce Cr(VI) in diverse temperatures (15-45 °C), pH (5-9); and in presence of other metals (Cd, Cu, Mo, Ni, Pb), oxyanions (SO4-2, NO2-), and metabolic inhibitors (phenol, NaN3, EDTA). Growth and reduction were also detected in nutrient-limited minimal salt media, and contaminated leather industry effluent thereby making TCL a potential candidate for bioremediation.
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Affiliation(s)
- Sohini Banerjee
- Microbiology Laboratory, Department of Botany (DST-FIST and UGC-DRS Funded), Institute of Science, Visva-Bharati (A Central University), Santiniketan, West Bengal 731235, India; Department of Environmental Studies, Institute of Science, Visva-Bharati (A Central University), Santiniketan, West Bengal 731235, India
| | - Arijit Misra
- Microbiology Laboratory, Department of Botany (DST-FIST and UGC-DRS Funded), Institute of Science, Visva-Bharati (A Central University), Santiniketan, West Bengal 731235, India
| | - Shibani Chaudhury
- Department of Environmental Studies, Institute of Science, Visva-Bharati (A Central University), Santiniketan, West Bengal 731235, India
| | - Bomba Dam
- Microbiology Laboratory, Department of Botany (DST-FIST and UGC-DRS Funded), Institute of Science, Visva-Bharati (A Central University), Santiniketan, West Bengal 731235, India.
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17
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Sevigny JL, Rothenheber D, Diaz KS, Zhang Y, Agustsson K, Bergeron RD, Thomas WK. Marker genes as predictors of shared genomic function. BMC Genomics 2019; 20:268. [PMID: 30947688 PMCID: PMC6449922 DOI: 10.1186/s12864-019-5641-1] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2018] [Accepted: 03/24/2019] [Indexed: 12/15/2022] Open
Abstract
Background Although high-throughput marker gene studies provide valuable insight into the diversity and relative abundance of taxa in microbial communities, they do not provide direct measures of their functional capacity. Recently, scientists have shown a general desire to predict functional profiles of microbial communities based on phylogenetic identification inferred from marker genes, and recent tools have been developed to link the two. However, to date, no large-scale examination has quantified the correlation between the marker gene based taxonomic identity and protein coding gene conservation. Here we utilize 4872 representative prokaryotic genomes from NCBI to investigate the relationship between marker gene identity and shared protein coding gene content. Results Even at 99–100% marker gene identity, genomes share on average less than 75% of their protein coding gene content. This occurs regardless of the marker gene(s) used: V4 region of the 16S rRNA, complete 16S rRNA, or single copy orthologs through a multi-locus sequence analysis. An important aspect related to this observation is the intra-organism variation of 16S copies from a single genome. Although the majority of 16S copies were found to have high sequence similarity (> 99%), several genomes contained copies that were highly diverged (< 97% identity). Conclusions This is the largest comparison between marker gene similarity and shared protein coding gene content to date. The study highlights the limitations of inferring a microbial community’s functions based on marker gene phylogeny. The data presented expands upon the results of previous studies that examined one or few bacterial species and supports the hypothesis that 16S rRNA and other marker genes cannot be directly used to fully predict the functional potential of a bacterial community. Electronic supplementary material The online version of this article (10.1186/s12864-019-5641-1) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Joseph L Sevigny
- Molecular, Cellular, and Biomedical Sciences, University of New Hampshire, 46 College Rd, Rudman Hall, Durham, NH, 03824, USA. .,Hubbard Center for Genome Studies, University of New Hampshire, 35 Colovos Rd, Gregg Hall, Durham, NH, 03824, USA.
| | - Derek Rothenheber
- Molecular, Cellular, and Biomedical Sciences, University of New Hampshire, 46 College Rd, Rudman Hall, Durham, NH, 03824, USA
| | - Krystalle Sharlyn Diaz
- Molecular, Cellular, and Biomedical Sciences, University of New Hampshire, 46 College Rd, Rudman Hall, Durham, NH, 03824, USA.,Hubbard Center for Genome Studies, University of New Hampshire, 35 Colovos Rd, Gregg Hall, Durham, NH, 03824, USA
| | - Ying Zhang
- Department of Computer Science, University of New Hampshire, 33 Academic Way, Kingsbury Hall, Durham, NH, 0324, USA
| | - Kristin Agustsson
- Department of Computer Science, University of New Hampshire, 33 Academic Way, Kingsbury Hall, Durham, NH, 0324, USA
| | - R Daniel Bergeron
- Department of Computer Science, University of New Hampshire, 33 Academic Way, Kingsbury Hall, Durham, NH, 0324, USA
| | - W Kelley Thomas
- Molecular, Cellular, and Biomedical Sciences, University of New Hampshire, 46 College Rd, Rudman Hall, Durham, NH, 03824, USA.,Hubbard Center for Genome Studies, University of New Hampshire, 35 Colovos Rd, Gregg Hall, Durham, NH, 03824, USA
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18
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Recognition of a New Cr(VI)-Reducing Strain and Study of the Potential Capacity for Reduction of Cr(VI) of the Strain. BIOMED RESEARCH INTERNATIONAL 2019; 2019:5135017. [PMID: 30881989 PMCID: PMC6387719 DOI: 10.1155/2019/5135017] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/26/2018] [Revised: 11/14/2018] [Accepted: 01/22/2019] [Indexed: 12/14/2022]
Abstract
The biotransformation of hexavalent chromium [Cr(VI)] via Cr(VI)-reducing microorganisms is considered an ecofriendly approach to detoxify Cr(VI). A new Cr(VI)-reducing bacterium named Microbacterium sp. QH-2 was isolated in this study. Scanning electron microscopy (SEM) images showed protrusions on the bacterial surface of strain QH-2 after an 18 h incubation in media under 10 mM Cr(VI) treatment. Results of the experiments on the capacity of reducing Cr(VI) indicated that strain QH-2 could reduce 100% Cr(VI) less than 48-96 h. When media with 4 mM Cr(VI) were incubated, the fastest reduction rate of strain QH-2 could come up to 2.17 mg/L Cr(VI) h−1. Furthermore, strain QH-2 could reduce Cr(VI) over the pH between 7 and 10. The optimum pH to reduce Cr(VI) by strain QH-2 was 9. Strain QH-2 also exhibited a relatively high tolerance even to 20 mM Cr(VI). These results declared that strain QH-2 had the potential to detoxify Cr(VI) in the Cr(VI)-contaminated soil or effluent.
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19
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Learman DR, Ahmad Z, Brookshier A, Henson MW, Hewitt V, Lis A, Morrison C, Robinson A, Todaro E, Wologo E, Wynne S, Alm EW, Kourtev PS. Comparative genomics of 16 Microbacterium spp. that tolerate multiple heavy metals and antibiotics. PeerJ 2019; 6:e6258. [PMID: 30671291 PMCID: PMC6336093 DOI: 10.7717/peerj.6258] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2018] [Accepted: 12/06/2018] [Indexed: 11/20/2022] Open
Abstract
A total of 16 different strains of Microbacterium spp. were isolated from contaminated soil and enriched on the carcinogen, hexavalent chromium [Cr(VI)]. The majority of the isolates (11 of the 16) were able to tolerate concentrations (0.1 mM) of cobalt, cadmium, and nickel, in addition to Cr(VI) (0.5–20 mM). Interestingly, these bacteria were also able to tolerate three different antibiotics (ranges: ampicillin 0–16 μg ml−1, chloramphenicol 0–24 μg ml−1, and vancomycin 0–24 μg ml−1). To gain genetic insight into these tolerance pathways, the genomes of these isolates were assembled and annotated. The genomes of these isolates not only have some shared genes (core genome) but also have a large amount of variability. The genomes also contained an annotated Cr(VI) reductase (chrR) that could be related to Cr(VI) reduction. Further, various heavy metal tolerance (e.g., Co/Zn/Cd efflux system) and antibiotic resistance genes were identified, which provide insight into the isolates’ ability to tolerate metals and antibiotics. Overall, these isolates showed a wide range of tolerances to heavy metals and antibiotics and genetic diversity, which was likely required of this population to thrive in a contaminated environment.
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Affiliation(s)
- Deric R Learman
- Institute for Great Lakes Research and Department of Biology, Central Michigan University, Mount Pleasant, MI, USA
| | - Zahra Ahmad
- Institute for Great Lakes Research and Department of Biology, Central Michigan University, Mount Pleasant, MI, USA
| | - Allison Brookshier
- Institute for Great Lakes Research and Department of Biology, Central Michigan University, Mount Pleasant, MI, USA
| | - Michael W Henson
- Institute for Great Lakes Research and Department of Biology, Central Michigan University, Mount Pleasant, MI, USA
| | - Victoria Hewitt
- Institute for Great Lakes Research and Department of Biology, Central Michigan University, Mount Pleasant, MI, USA
| | - Amanda Lis
- Institute for Great Lakes Research and Department of Biology, Central Michigan University, Mount Pleasant, MI, USA
| | - Cody Morrison
- Institute for Great Lakes Research and Department of Biology, Central Michigan University, Mount Pleasant, MI, USA
| | - Autumn Robinson
- Institute for Great Lakes Research and Department of Biology, Central Michigan University, Mount Pleasant, MI, USA
| | - Emily Todaro
- Institute for Great Lakes Research and Department of Biology, Central Michigan University, Mount Pleasant, MI, USA
| | - Ethan Wologo
- Institute for Great Lakes Research and Department of Biology, Central Michigan University, Mount Pleasant, MI, USA
| | - Sydney Wynne
- Institute for Great Lakes Research and Department of Biology, Central Michigan University, Mount Pleasant, MI, USA
| | - Elizabeth W Alm
- Institute for Great Lakes Research and Department of Biology, Central Michigan University, Mount Pleasant, MI, USA
| | - Peter S Kourtev
- Institute for Great Lakes Research and Department of Biology, Central Michigan University, Mount Pleasant, MI, USA
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20
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Draft Genome Sequences of Two Bacillus sp. Strains and Four Cellulomonas sp. Strains Isolated from Heavy-Metal-Contaminated Soil. Microbiol Resour Announc 2018; 7:MRA01063-18. [PMID: 30533647 PMCID: PMC6256670 DOI: 10.1128/mra.01063-18] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2018] [Accepted: 08/21/2018] [Indexed: 11/29/2022] Open
Abstract
We present the draft genome sequence for Bacillus sp. strain PF3, Bacillus sp. We present the draft genome sequence for Bacillus sp. strain PF3, Bacillus sp. strain K6W, Cellulomonas sp. strain B12, Cellulomonas sp. strain K38, Cellulomonas sp. strain K39, and Cellulomonas sp. strain K42B. These bacteria were isolated from contaminated soils, and their genomes contain genes related to chromate transport and reduction.
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21
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Shil K, Pal S. Metabolic adaptability in hexavalent chromium-treated renal tissue: an in vivo study. Clin Kidney J 2017; 11:222-229. [PMID: 29644063 PMCID: PMC5887570 DOI: 10.1093/ckj/sfx069] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2017] [Accepted: 05/30/2017] [Indexed: 12/17/2022] Open
Abstract
Background Hexavalent chromium [Cr(VI)], an environmental pollutant that originates mostly from anthropogenic sources, is a serious threat to human health. After entering into cells, Cr(VI) is capable of producing excessive free radicals and causing tissue damage. The present study aims to reveal the toxic manifestation of Cr(VI) on the metabolic activity of renal tissue. Methods Male Swiss albino mice were treated orally with potassium dichromate (K2Cr2O7) at a dose of 10 mg/kg body weight for a period of 30 days. Important tricarboxylic acid (TCA) cycle enzyme activities like isocitrate dehydrogenase, succinate dehydrogenase and malate dehydrogenase, as well as the activities of enzymes involved in oxidative phosphorylation such as Nicotinamide adenine dinucleotide (NADH) dehydrogenase, were measured. Additionally, transaminase and protease (pronase, cathepsin and trypsin) activities, tissue protein and free amino nitrogen were estimated in renal tissue. Glucose-6-phosphatase, glucose-6-phosphate dehydrogenase and alkaline phosphatase activities, as well as lactic acid, pyruvic acid and chromium contents, of kidneys were determined following standard protocols. Kidney histology was performed by hematoxylin and eosin staining. Results Cr(VI) suppresses the rate-limiting enzymes of the TCA cycle and oxidative phosphorylation indicating an inhibition of renal ATP production. It decreases protease activity by eliminating the protein substrates and alters the gluconeogenic pathway. Cr(VI) worsens the normophysiological attributes of renal tissue by enhancing the activity of alkaline phosphatase, pointing towards kidney disease. Histopathological observations confirmed these biochemical results through the presence of chronic tubular nephritis and altered glomerular structure. Cr(VI) retention occurs to a greater extent in renal tissue, which intensifies the toxic manifestation of this pollutant in the kidney. Conclusions Cr(VI) disrupts the metabolic interaction between carbohydrates and proteins in mammalian renal tissue.
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Affiliation(s)
- Kanu Shil
- Nutritional Biochemistry and Toxicology Laboratory, Department of Human Physiology, Tripura University, Suryamaninagar, West Tripura, India
| | - Sudipta Pal
- Nutritional Biochemistry and Toxicology Laboratory, Department of Human Physiology, Tripura University, Suryamaninagar, West Tripura, India
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22
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Avramov AP, Couger M, Hartley EL, Land C, Wellendorf R, Hanafy RA, Budd C, French DP, Hoff WD, Youssef N. Draft genome sequence of Microbacterium oleivorans strain Wellendorf implicates heterotrophic versatility and bioremediation potential. GENOMICS DATA 2016; 10:54-60. [PMID: 27699150 PMCID: PMC5035333 DOI: 10.1016/j.gdata.2016.09.005] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/19/2016] [Revised: 09/08/2016] [Accepted: 09/14/2016] [Indexed: 11/29/2022]
Abstract
Microbacterium oleivorans is a predominant member of hydrocarbon-contaminated environments. We here report on the genomic analysis of M. oleivorans strain Wellendorf that was isolated from an indoor door handle. The partial genome of M. oleivorans strain Wellendorf consists of 2,916,870 bp of DNA with 2831 protein-coding genes and 49 RNA genes. The organism appears to be a versatile mesophilic heterotroph potentially capable of hydrolysis a suite of carbohydrates and amino acids. Genomic analysis revealed metabolic versatility with genes involved in the metabolism and transport of glucose, fructose, rhamnose, galactose, xylose, arabinose, alanine, aspartate, asparagine, glutamate, serine, glycine, threonine and cysteine. This is the first detailed analysis of a Microbacterium oleivorans genome.
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Affiliation(s)
- Anton P. Avramov
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States
| | - M.B. Couger
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States
| | - Emily L. Hartley
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States
| | - Craig Land
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States
| | - Rachel Wellendorf
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States
| | - Radwa A. Hanafy
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States
| | - Connie Budd
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States
| | - Donald P. French
- Department of Integrative Biology, Oklahoma State University, Stillwater, OK, United States
| | - Wouter D. Hoff
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States
| | - Noha Youssef
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States
- Corresponding author at: 1110 S Innovation Way, Stillwater, OK 74074, United States.1110 S Innovation WayStillwaterOK74074United States
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