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Guirguis H, Youssef N, William M, Abdel-Dayem D, El-Sayed MM. Bioinspired Stevia rebaudiana Green Zinc Oxide Nanoparticles for the Adsorptive Removal of Antibiotics from Water. ACS Omega 2024; 9:12881-12895. [PMID: 38524454 PMCID: PMC10955700 DOI: 10.1021/acsomega.3c09044] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/13/2023] [Revised: 02/10/2024] [Accepted: 02/21/2024] [Indexed: 03/26/2024]
Abstract
Green zinc oxide nanoparticles (ZnO NPs) synthesized using Stevia rebaudiana as a reducing agent were investigated as ecofriendly adsorbents for the removal of the antibiotics ciprofloxacin (CIP) and tetracycline (TET) from water. Green ZnO NPs were synthesized using a rapid novel approach that did not require annealing or calcination at high temperatures to produce mesoporous NPs with a size range of 37.36-71.33 nm, a specific surface area of 15.28 m2/g, and a negative surface charge of -15 mV at pH 5. The green ZnO NPs exhibited an antioxidant activity of 85.57% at 250 μg/mL and an antibacterial activity with MIC and MBC of 50 and 100 mg/mL, respectively, against both Escherichia coli and Staphylococcus aureus. The best adsorption performance was achieved using a 4 g/L dose and pH 5, yielding, respectively, 86.77 ± 0.82% removal and 27.07 ± 0.26 mg/g adsorption capacity for CIP at 10 mg/L and 67.86 ± 3.41% and 15.88 ± 0.37 mg/g for TET at 25 mg/L. The green ZnO NPs achieved 79.71% ± 0.28 and 61.55% ± 0.53 removal of 10 mg/L CIP and 25 mg/L TET, respectively, in a spiked tap water binary system of the two contaminants. Adsorption of CIP and TET occurred mainly via electrostatic interactions, whereby CIP was bound more strongly than TET by virtue of its charge and size. The synthesis and adsorption processes were evaluated by a stepwise regression statistical model to optimize their parameters. Lastly, the green ZnO NPs were regenerated and reused for 5 cycles, indicating their functionality as simple, reusable, and low-cost adsorbents for the removal of CIP and TET from wastewater, in accordance with SDGs #6 and 12 for the sustainable management of water.
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Affiliation(s)
- Hania
A. Guirguis
- Department
of Chemistry, School of Sciences and Engineering, The American University in Cairo, P.O. Box 74, AUC Avenue, New Cairo 11835, Cairo, Egypt
| | - Noha Youssef
- Mathematics
and Actuarial Science Department, School of Sciences and Engineering, The American University in Cairo, P.O. Box 74, AUC Avenue, New Cairo 11835, Cairo, Egypt
| | - Mariam William
- Department
of Chemistry, School of Sciences and Engineering, The American University in Cairo, P.O. Box 74, AUC Avenue, New Cairo 11835, Cairo, Egypt
| | - Dania Abdel-Dayem
- Department
of Chemistry, School of Sciences and Engineering, The American University in Cairo, P.O. Box 74, AUC Avenue, New Cairo 11835, Cairo, Egypt
| | - Mayyada M.H. El-Sayed
- Department
of Chemistry, School of Sciences and Engineering, The American University in Cairo, P.O. Box 74, AUC Avenue, New Cairo 11835, Cairo, Egypt
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Fadl N, Abdelmoneim SA, Gebreal A, Youssef N, Ghazy RM. Routine childhood immunization in Sub-Saharan Africa: addressing parental vaccine hesitancy. Public Health 2024; 226:66-73. [PMID: 38007843 DOI: 10.1016/j.puhe.2023.10.049] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2023] [Revised: 10/26/2023] [Accepted: 10/29/2023] [Indexed: 11/28/2023]
Abstract
OBJECTIVES Parental vaccine hesitancy (VH) is a major barrier to childhood vaccination. We aimed to identify the determinants of parental VH towards routine childhood immunization in 12 Sub-Saharan African countries. STUDY DESIGN A cross-sectional study was conducted from November 1 to December 15, 2022. METHODS Parents of children aged 19 months to 6 years and residing in the Sub-Saharan Africa were included. An anonymous online survey and face-to-face interviews were conducted. The Parent Attitude about Childhood Vaccine Scale was used to identify vaccine-hesitant parents. Multivariate regression and mediating analysis were performed. RESULTS Across the 5032 participants, 21.2% were hesitant towards routine childhood immunization. Urban residents (adjusted odds ratio [AOR] = 1.32, 95% confidence interval [CI]: 1.10-1.58), non-first-born children (AOR = 1.54, 95% CI: 1.19-1.98), and chronically ill children (AOR = 2.00, 95% CI: 1.69-2.37) increased the likelihood of parental VH. Mothers with higher education, attending at least one antenatal care (ANC) visit (AOR = 0.25, 95% CI: 0.19-0.32), and had a healthcare facility-based delivery (AOR = 0.55, 95% CI: 0.44-0.70) decreased the odds of parental VH. Parental VH mediated the effect of ANC and mothers' age on vaccination uptake. ANC increased the odds of vaccination uptake (odds ratio [OR] = 12.49, 95% CI: 9.68-16.13). Parental VH mediated the association between ANC and vaccination uptake, decreasing the likelihood of vaccination uptake (OR = 0.12, 95% CI: 0.10-0.14). Each additional year of the mother's age decreased the odds of vaccination uptake (OR = 0.95, 95% CI: 0.95-0.96). The indirect effect of mother's age on vaccination through parental VH decreased the odds of vaccination uptake (OR = 0.45, 95% CI: 0.44-0.45). Parental VH continued to be a mediator of the combined effect of mother's age and ANC on vaccination uptake, decreasing the likelihood of vaccination uptake (OR = 0.0017, 95% CI: 0.00166-0.00168). CONCLUSIONS Context-specific interventions are needed to address parental VH and improve vaccine acceptance and coverage.
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Affiliation(s)
- N Fadl
- Family Health Department, High Institute of Public Health, Alexandria University, Alexandria, Egypt.
| | - S A Abdelmoneim
- Clinical Research Administration, Directorate of Health Affairs, Egyptian Ministry of Health, Alexandria, Egypt.
| | - A Gebreal
- Faculty of Medicine, Alexandria University, Alexandria, Egypt.
| | - N Youssef
- Department of Medical-Surgical Nursing, College of Nursing, Princess Nourah Bint Abdulrahman University, Saudi Arabia.
| | - R M Ghazy
- Tropical Health Department, High Institute of Public Health, Alexandria University, Alexandria, Egypt.
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Najjari A, Boussetta A, Youssef N, Linares-Pastén JA, Mahjoubi M, Belloum R, Sghaier H, Cherif A, Ouzari HI. Physiological and genomic insights into abiotic stress of halophilic archaeon Natrinema altunense 4.1R isolated from a saline ecosystem of Tunisian desert. Genetica 2023; 151:133-152. [PMID: 36795306 PMCID: PMC9995536 DOI: 10.1007/s10709-023-00182-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2022] [Accepted: 02/02/2023] [Indexed: 02/17/2023]
Abstract
Halophilic archaea are polyextremophiles with the ability to withstand fluctuations in salinity, high levels of ultraviolet radiation, and oxidative stress, allowing them to survive in a wide range of environments and making them an excellent model for astrobiological research. Natrinema altunense 4.1R is a halophilic archaeon isolated from the endorheic saline lake systems, Sebkhas, located in arid and semi-arid regions of Tunisia. It is an ecosystem characterized by periodic flooding from subsurface groundwater and fluctuating salinities. Here, we assess the physiological responses and genomic characterization of N. altunense 4.1R to UV-C radiation, as well as osmotic and oxidative stresses. Results showed that the 4.1R strain is able to survive up to 36% of salinity, up to 180 J/m2 to UV-C radiation, and at 50 mM of H2O2, a resistance profile similar to Halobacterium salinarum, a strain often used as UV-C resistant model. In order to understand the genetic determinants of N. altunense 4.1R survival strategy, we sequenced and analyzed its genome. Results showed multiple gene copies of osmotic stress, oxidative stress, and DNA repair response mechanisms supporting its survivability at extreme salinities and radiations. Indeed, the 3D molecular structures of seven proteins related to responses to UV-C radiation (excinucleases UvrA, UvrB, and UvrC, and photolyase), saline stress (trehalose-6-phosphate synthase OtsA and trehalose-phosphatase OtsB), and oxidative stress (superoxide dismutase SOD) were constructed by homology modeling. This study extends the abiotic stress range for the species N. altunense and adds to the repertoire of UV and oxidative stress resistance genes generally known from haloarchaeon.
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Affiliation(s)
- Afef Najjari
- Faculté des Sciences de Tunis, LR03ES03 Laboratoire de Microbiologie et Biomolécules Actives, Université Tunis El Manar, 2092, Tunis, Tunisie
| | - Ayoub Boussetta
- Faculté des Sciences de Tunis, LR03ES03 Laboratoire de Microbiologie et Biomolécules Actives, Université Tunis El Manar, 2092, Tunis, Tunisie
| | - Noha Youssef
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, USA
| | - Javier A Linares-Pastén
- Department of Biotechnology, Faculty of Engineering, Lunds Tekniska Högskola (LTH), Lund University, P. O. Box 124, 22100, Lund, Sweden.
| | - Mouna Mahjoubi
- University of Manouba, ISBST, LR11-ES31 BVBGR, Biotechpole Sidi Thabet, 2020, Ariana, Tunisia
| | - Rahma Belloum
- Faculté des Sciences de Tunis, LR03ES03 Laboratoire de Microbiologie et Biomolécules Actives, Université Tunis El Manar, 2092, Tunis, Tunisie
| | - Haitham Sghaier
- Laboratory "Energy and Matter for Development of Nuclear Sciences" (LR16CNSTN02), National Center for Nuclear Sciences and Technology (CNSTN), Ariana, Tunisia
| | - Ameur Cherif
- University of Manouba, ISBST, LR11-ES31 BVBGR, Biotechpole Sidi Thabet, 2020, Ariana, Tunisia
| | - Hadda Imene Ouzari
- Faculté des Sciences de Tunis, LR03ES03 Laboratoire de Microbiologie et Biomolécules Actives, Université Tunis El Manar, 2092, Tunis, Tunisie
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Mares SE, King MM, Kubo A, Khanov AA, Lutter EI, Youssef N, Patrauchan MA. carP, encoding a Ca 2+-regulated putative phytase, is evolutionarily conserved in Pseudomonas aeruginosa and has potential as a biomarker. Microbiology (Reading) 2021; 167. [PMID: 33295862 DOI: 10.1099/mic.0.001004] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Abstract
Pseudomonas aeruginosa infects patients with cystic fibrosis, burns, wounds and implants. Previously, our group showed that elevated Ca2+ positively regulates the production of several virulence factors in P. aeruginosa, such as biofilm formation, production of pyocyanin and secreted proteases. We have identified a Ca2+-regulated β-propeller putative phytase, CarP, which is required for Ca2+ tolerance, regulation of the intracellular Ca2+ levels, and plays a role in Ca2+ regulation of P. aeruginosa virulence. Here, we studied the conservation of carP sequence and its occurrence in diverse phylogenetic groups of bacteria. In silico analysis revealed that carP and its two paralogues PA2017 and PA0319 are primarily present in P. aeruginosa and belong to the core genome of the species. We identified 155 single nucleotide alterations within carP, 42 of which lead to missense mutations with only three that affected the predicted 3D structure of the protein. PCR analyses with carP-specific primers detected P. aeruginosa specifically in 70 clinical and environmental samples. Sequence comparison demonstrated that carP is overall highly conserved in P. aeruginosa isolated from diverse environments. Such evolutionary preservation of carP illustrates its importance for P. aeruginosa adaptations to diverse environments and demonstrates its potential as a biomarker.
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Affiliation(s)
- Sergio E Mares
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK 74078, USA
| | - Michelle M King
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK 74078, USA
| | - Aya Kubo
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK 74078, USA
| | - Anna A Khanov
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK 74078, USA
| | - Erika I Lutter
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK 74078, USA
| | - Noha Youssef
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK 74078, USA
| | - Marianna A Patrauchan
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK 74078, USA
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Bayomie OS, Kandeel H, Shoeib T, Yang H, Youssef N, El-Sayed MMH. Novel approach for effective removal of methylene blue dye from water using fava bean peel waste. Sci Rep 2020; 10:7824. [PMID: 32385345 PMCID: PMC7210991 DOI: 10.1038/s41598-020-64727-5] [Citation(s) in RCA: 78] [Impact Index Per Article: 19.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2019] [Accepted: 04/16/2020] [Indexed: 11/09/2022] Open
Abstract
Fava bean peels, Vicia faba (FBP) are investigated as biosorbents for the removal of Methylene Blue (MB) dye from aqueous solutions through a novel and efficient sorption process utilizing ultrasonic-assisted (US) shaking. Ultrasonication remarkably enhanced sorption rate relative to conventional (CV) shaking, while maintaining the same sorption capacity. Ultrasonic sorption rate amounted to four times higher than its conventional counterpart at 3.6 mg/L initial dye concentration, 5 g/L adsorbent dose, and pH 5.8. Under the same adsorbent dose and pH conditions, percent removal ranged between 70-80% at the low dye concentration range (3.6-25 mg/L) and reached about 90% at 50 mg/L of the initial dye concentration. According to the Langmuir model, maximum sorption capacity was estimated to be 140 mg/g. A multiple linear regression statistical model revealed that adsorption was significantly affected by initial concentration, adsorbent dose and time. FBP could be successfully utilized as a low-cost biosorbent for the removal of MB from wastewater via US biosorption as an alternative to CV sorption. US biosorption yields the same sorption capacities as CV biosorption, but with significant reduction in operational times.
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Affiliation(s)
- Omar S Bayomie
- Department of Chemistry, American University in Cairo, AUC Avenue, P.O. Box 74, New Cairo, 11835, Egypt.,Department of Energy and Processes, PSL Research University, Paris, France
| | - Haitham Kandeel
- Department of Chemistry, American University in Cairo, AUC Avenue, P.O. Box 74, New Cairo, 11835, Egypt.,Department of Chemistry and Chemical Engineering, École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland
| | - Tamer Shoeib
- Department of Chemistry, American University in Cairo, AUC Avenue, P.O. Box 74, New Cairo, 11835, Egypt
| | - Hu Yang
- State Key Laboratory of Pollution Control and Resource Reuse, School of the Environment, Nanjing University, Nanjing, 210023, P. R. China
| | - Noha Youssef
- Department of Mathematics and Actuarial Science, American University in Cairo, AUC Avenue, P.O. Box 74, New Cairo, 11835, Egypt
| | - Mayyada M H El-Sayed
- Department of Chemistry, American University in Cairo, AUC Avenue, P.O. Box 74, New Cairo, 11835, Egypt.
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Rinke C, Rubino F, Messer LF, Youssef N, Parks DH, Chuvochina M, Brown M, Jeffries T, Tyson GW, Seymour JR, Hugenholtz P. Correction: A phylogenomic and ecological analysis of the globally abundant Marine Group II archaea (Ca. Poseidoniales ord. nov.). ISME J 2019; 14:878. [PMID: 31754204 DOI: 10.1038/s41396-019-0556-z] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
An amendment to this paper has been published and can be accessed via a link at the top of the paper.
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Affiliation(s)
- Christian Rinke
- Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, The University of Queensland, St. Lucia, QLD, Australia.
| | - Francesco Rubino
- Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, The University of Queensland, St. Lucia, QLD, Australia
| | - Lauren F Messer
- Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, The University of Queensland, St. Lucia, QLD, Australia
| | - Noha Youssef
- Department of Microbiology and Molecular Genetics, Oklahoma State University Stillwater, Stillwater, OK, USA
| | - Donovan H Parks
- Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, The University of Queensland, St. Lucia, QLD, Australia
| | - Maria Chuvochina
- Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, The University of Queensland, St. Lucia, QLD, Australia
| | - Mark Brown
- School of Environmental and Life Sciences, University of Newcastle, Callaghan, NSW, Australia
| | - Thomas Jeffries
- Hawkesbury Institute for the Environment, Western Sydney University, Sydney, NSW, Australia
| | - Gene W Tyson
- Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, The University of Queensland, St. Lucia, QLD, Australia
| | - Justin R Seymour
- Climate Change Cluster, University of Technology Sydney, Sydney, NSW, Australia
| | - Philip Hugenholtz
- Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, The University of Queensland, St. Lucia, QLD, Australia
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Youssef N, Wynn H. A discussion on adaptive designs for computer experiments. Seq Anal 2019. [DOI: 10.1080/07474946.2019.1648932] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
Affiliation(s)
- Noha Youssef
- Department of Mathematics and Actuarial Science, The American University in Cairo, Egypt
| | - Henry Wynn
- Department of Statistics, The London School of Economics and Political Science, London, UK
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Patel R, Elmaadawi A, Youssef N. How Valuable is Electroconvulsive Therapy in Bipolar Patients During Inpatient Stay? Analysis of the National Inpatient Sample of the USA. Brain Stimul 2019. [DOI: 10.1016/j.brs.2018.12.293] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022] Open
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Youssef N, Ravilla D, McCall W, Patel C, McCloud L, Yassa M, Rosenquist P. Magnitude of Reduction & Speed of Remission of Suicidality for Low AmPlitude Seizure Therapy (LAP-ST) Compared to Standard Right Unilateral ECT. Brain Stimul 2019. [DOI: 10.1016/j.brs.2018.12.422] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022] Open
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Patel R, Sreeram V, Thakur T, Bachu R, Youssef N. A national longitudinal study for regional variation of inpatient ECT utilization from 4411 hospitals across the united states. Brain Stimul 2019. [DOI: 10.1016/j.brs.2018.12.283] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022] Open
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Cicek M, McCall W, Sackeim H, Rosenquist P, Youssef N. Is there evidence that electric parameters and electrode placement affect the cognitive side effects of ECT in patients with schizophrenia and schizoaffective disorder? A systematic review. Brain Stimul 2019. [DOI: 10.1016/j.brs.2018.12.526] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022] Open
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Adl SM, Bass D, Lane CE, Lukeš J, Schoch CL, Smirnov A, Agatha S, Berney C, Brown MW, Burki F, Cárdenas P, Čepička I, Chistyakova L, del Campo J, Dunthorn M, Edvardsen B, Eglit Y, Guillou L, Hampl V, Heiss AA, Hoppenrath M, James TY, Karnkowska A, Karpov S, Kim E, Kolisko M, Kudryavtsev A, Lahr DJ, Lara E, Le Gall L, Lynn DH, Mann DG, Massana R, Mitchell EA, Morrow C, Park JS, Pawlowski JW, Powell MJ, Richter DJ, Rueckert S, Shadwick L, Shimano S, Spiegel FW, Torruella G, Youssef N, Zlatogursky V, Zhang Q. Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes. J Eukaryot Microbiol 2019; 66:4-119. [PMID: 30257078 PMCID: PMC6492006 DOI: 10.1111/jeu.12691] [Citation(s) in RCA: 566] [Impact Index Per Article: 113.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2018] [Accepted: 09/04/2018] [Indexed: 12/22/2022]
Abstract
This revision of the classification of eukaryotes follows that of Adl et al., 2012 [J. Euk. Microbiol. 59(5)] and retains an emphasis on protists. Changes since have improved the resolution of many nodes in phylogenetic analyses. For some clades even families are being clearly resolved. As we had predicted, environmental sampling in the intervening years has massively increased the genetic information at hand. Consequently, we have discovered novel clades, exciting new genera and uncovered a massive species level diversity beyond the morphological species descriptions. Several clades known from environmental samples only have now found their home. Sampling soils, deeper marine waters and the deep sea will continue to fill us with surprises. The main changes in this revision are the confirmation that eukaryotes form at least two domains, the loss of monophyly in the Excavata, robust support for the Haptista and Cryptista. We provide suggested primer sets for DNA sequences from environmental samples that are effective for each clade. We have provided a guide to trophic functional guilds in an appendix, to facilitate the interpretation of environmental samples, and a standardized taxonomic guide for East Asian users.
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Affiliation(s)
- Sina M. Adl
- Department of Soil SciencesCollege of Agriculture and Bioresources, University of SaskatchewanSaskatoonS7N 5A8SKCanada
| | - David Bass
- Department of Life SciencesThe Natural History MuseumCromwell RoadLondonSW7 5BDUnited Kingdom
- Centre for Environment, Fisheries and Aquaculture Science (CEFAS)Barrack Road, The NotheWeymouthDorsetDT4 8UBUnited Kingdom
| | - Christopher E. Lane
- Department of Biological SciencesUniversity of Rhode IslandKingstonRhode Island02881USA
| | - Julius Lukeš
- Institute of Parasitology, Biology CentreCzech Academy of SciencesČeské Budějovice37005Czechia
- Faculty of ScienceUniversity of South BohemiaČeské Budějovice37005Czechia
| | - Conrad L. Schoch
- National Institute for Biotechnology Information, National Library of Medicine, National Institutes of HealthBethesdaMaryland20892USA
| | - Alexey Smirnov
- Department of Invertebrate ZoologyFaculty of BiologySaint Petersburg State UniversitySaint Petersburg199034Russia
| | - Sabine Agatha
- Department of BiosciencesUniversity of SalzburgHellbrunnerstrasse 34SalzburgA‐5020Austria
| | - Cedric Berney
- CNRS, UMR 7144 (AD2M), Groupe Evolution des Protistes et Ecosystèmes PélagiquesStation Biologique de RoscoffPlace Georges TeissierRoscoff29680France
| | - Matthew W. Brown
- Department of Biological SciencesMississippi State UniversityStarkville39762MississippiUSA
- Institute for Genomics, Biocomputing & BiotechnologyMississippi State UniversityStarkville39762MississippiUSA
| | - Fabien Burki
- Department of Organismal BiologyProgram in Systematic BiologyScience for Life LaboratoryUppsala UniversityUppsala75236Sweden
| | - Paco Cárdenas
- Pharmacognosy, Department of Medicinal ChemistryUppsala UniversityBMC Box 574UppsalaSE‐75123Sweden
| | - Ivan Čepička
- Department of ZoologyFaculty of ScienceCharles UniversityVinicna 7Prague128 44Czechia
| | - Lyudmila Chistyakova
- Core Facility Centre for Culture Collection of MicroorganismsSaint Petersburg State UniversitySaint Petersburg198504Russia
| | - Javier del Campo
- Institut de Ciències del Mar, CSICPasseig Marítim de la Barceloneta, 37‐49Barcelona08003CataloniaSpain
| | - Micah Dunthorn
- Department of EcologyUniversity of KaiserslauternErwin‐Schroedinger StreetKaiserslauternD‐67663Germany
- Department of Eukaryotic MicrobiologyUniversity of Duisburg‐EssenUniversitätsstrasse 5EssenD‐45141Germany
| | - Bente Edvardsen
- Department of BiosciencesUniversity of OsloP.O. Box 1066 BlindernOslo0316Norway
| | - Yana Eglit
- Department of BiologyDalhousie UniversityHalifaxB3H 4R2NSCanada
| | - Laure Guillou
- Sorbonne Université, Université Pierre et Marie Curie ‐ Paris 6, CNRS, UMR 7144 (AD2M)Station Biologique de RoscoffPlace Georges Teissier, CS90074Roscoff29688France
| | - Vladimír Hampl
- Department of ParasitologyFaculty of ScienceCharles University, BIOCEVPrůmyslová 595Vestec252 42Czechia
| | - Aaron A. Heiss
- Department of Invertebrate ZoologyAmerican Museum of Natural HistoryNew York CityNew York10024USA
| | - Mona Hoppenrath
- Senckenberg am Meer, DZMB – German Centre for Marine Biodiversity ResearchWilhelmshaven26382Germany
| | - Timothy Y. James
- Department of Ecology and Evolutionary BiologyUniversity of MichiganAnn ArborMichigan48109USA
| | - Anna Karnkowska
- Department of Molecular Phylogenetics and EvolutionUniversity of WarsawWarsaw02‐089Poland
| | - Sergey Karpov
- Department of Invertebrate ZoologyFaculty of BiologySaint Petersburg State UniversitySaint Petersburg199034Russia
- Department of Molecular Phylogenetics and EvolutionUniversity of WarsawWarsaw02‐089Poland
| | - Eunsoo Kim
- Department of Invertebrate ZoologyAmerican Museum of Natural HistoryNew York CityNew York10024USA
| | - Martin Kolisko
- Institute of Parasitology, Biology CentreCzech Academy of SciencesČeské Budějovice37005Czechia
| | - Alexander Kudryavtsev
- Department of Invertebrate ZoologyFaculty of BiologySaint Petersburg State UniversitySaint Petersburg199034Russia
- Laboratory of Parasitic Worms and ProtistologyZoological Institute RASSaint Petersburg199034Russia
| | - Daniel J.G. Lahr
- Department of ZoologyInstitute of BiosciencesUniversity of Sao PauloMatao Travessa 14 Cidade UniversitariaSao Paulo05508‐090Sao PauloBrazil
| | - Enrique Lara
- Laboratory of Soil BiodiversityUniversity of NeuchâtelRue Emile‐Argand 11Neuchâtel2000Switzerland
- Real Jardín Botánico, CSICPlaza de Murillo 2Madrid28014Spain
| | - Line Le Gall
- Institut de Systématique, Évolution, Biodiversité, Muséum National d'Histoire NaturelleSorbonne Universités57 rue Cuvier, CP 39Paris75005France
| | - Denis H. Lynn
- Department of Integrative BiologyUniversity of GuelphSummerlee Science ComplexGuelphONN1G 2W1Canada
- Department of ZoologyUniversity of British Columbia4200‐6270 University Blvd.VancouverBCV6T 1Z4Canada
| | - David G. Mann
- Royal Botanic GardenEdinburghEH3 5LRUnited Kingdom
- Institute for Agrifood Research and TechnologyC/Poble Nou km 5.5Sant Carles de La RàpitaE‐43540Spain
| | - Ramon Massana
- Institut de Ciències del Mar, CSICPasseig Marítim de la Barceloneta, 37‐49Barcelona08003CataloniaSpain
| | - Edward A.D. Mitchell
- Laboratory of Soil BiodiversityUniversity of NeuchâtelRue Emile‐Argand 11Neuchâtel2000Switzerland
- Jardin Botanique de NeuchâtelChemin du Perthuis‐du‐Sault 58Neuchâtel2000Switzerland
| | - Christine Morrow
- Department of Natural SciencesNational Museums Northern Ireland153 Bangor RoadHolywoodBT18 OEUUnited Kingdom
| | - Jong Soo Park
- Department of Oceanography and Kyungpook Institute of OceanographySchool of Earth System SciencesKyungpook National UniversityDaeguKorea
| | - Jan W. Pawlowski
- Department of Genetics and EvolutionUniversity of Geneva1211Geneva 4Switzerland
| | - Martha J. Powell
- Department of Biological SciencesThe University of AlabamaTuscaloosaAlabama35487USA
| | - Daniel J. Richter
- Institut de Biologia Evolutiva (CSIC‐Universitat Pompeu Fabra)Passeig Marítim de la Barceloneta 37‐49Barcelona08003CataloniaSpain
| | - Sonja Rueckert
- School of Applied SciencesEdinburgh Napier UniversityEdinburghEH11 4BNUnited Kingdom
| | - Lora Shadwick
- Department of Biological SciencesUniversity of ArkansasFayettevilleArkansasAR 72701USA
| | - Satoshi Shimano
- Science Research CentreHosei University2‐17‐1 FujimiChiyoda‐kuTokyo102‐8160Japan
| | - Frederick W. Spiegel
- Department of Biological SciencesUniversity of ArkansasFayettevilleArkansasAR 72701USA
| | - Guifré Torruella
- Laboratoire Evolution et Systématique, Université Paris‐XIOrsay91405France
| | - Noha Youssef
- Department of Microbiology and Molecular GeneticsOklahoma State UniversityStillwaterOklahoma74074USA
| | - Vasily Zlatogursky
- Department of Invertebrate ZoologyFaculty of BiologySaint Petersburg State UniversitySaint Petersburg199034Russia
- Department of Organismal BiologySystematic Biology ProgramUppsala UniversityUppsalaSE‐752 36Sweden
| | - Qianqian Zhang
- Yantai Institute of Coastal Zone ResearchChinese Academy of ScienceYantai264003China
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El Kassas M, Funk AL, Abd El Latif Y, Vasiliu A, Sherief A, Shimakawa Y, Youssef N, El Tahan A, Elbadry M, Farid AM, El Shazly Y, Doss W, Esmat G, Fontanet A. Letter: concordance of SVR4 and SVR12 following direct-acting anti-viral treatment in Egypt. Aliment Pharmacol Ther 2018; 47:1564-1566. [PMID: 29878419 DOI: 10.1111/apt.14628] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- M El Kassas
- Endemic Medicine Department, Faculty of Medicine, Helwan University, Cairo, Egypt
| | - A L Funk
- Emerging Disease Epidemiology Unit, Institut Pasteur, Paris, France
| | - Y Abd El Latif
- Tropical Medicine Department, Faculty of Medicine, Ain Shams University, Cairo, Egypt
| | - A Vasiliu
- Emerging Disease Epidemiology Unit, Institut Pasteur, Paris, France
| | - A Sherief
- Tropical Medicine Department, Faculty of Medicine, Ain Shams University, Cairo, Egypt
| | - Y Shimakawa
- Emerging Disease Epidemiology Unit, Institut Pasteur, Paris, France
| | - N Youssef
- Medical Surgical Nursing Department, Faculty of Nursing, Cairo University, Cairo, Egypt
| | - A El Tahan
- New Cairo Viral Hepatitis Treatment Unit, Cairo, Egypt
| | - M Elbadry
- Tropical Medicine and Gastroenterology Department, Faculty of Medicine, Aswan University, Sahary City, Egypt
| | - A M Farid
- Tropical Medicine Department, Faculty of Medicine, Ain Shams University, Cairo, Egypt
| | - Y El Shazly
- Egyptian National Committee for Control of Viral Hepatitis, Cairo, Egypt
| | - W Doss
- Egyptian National Committee for Control of Viral Hepatitis, Cairo, Egypt
| | - G Esmat
- Egyptian National Committee for Control of Viral Hepatitis, Cairo, Egypt
| | - A Fontanet
- Emerging Disease Epidemiology Unit, Institut Pasteur, Paris, France.,Institut Pasteur, Conservatoire National des Arts et Métiers, Unité PACRI, Paris, France
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McCall WV, Youssef N, Branch F, Nolla T, McCloud L, Moraczewski J, Tauhidul L, Phillips M, Case D, Rosenquist P. 0947 A Randomized Controlled Trial (RCT) Of Prazosin Versus Placebo For Suicidal Posttraumatic Stress Disorder (PTSD) Patients With Nightmares - A Pilot Study. Sleep 2018. [DOI: 10.1093/sleep/zsy061.946] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
| | - N Youssef
- Medical College of Georgia, Augusta, GA
| | - F Branch
- Medical College of Georgia, Augusta, GA
| | - T Nolla
- Medical College of Georgia, Augusta, GA
| | - L McCloud
- Medical College of Georgia, Augusta, GA
| | | | | | | | - D Case
- Wake Forest School of Medicine, Winston-Salem, NC
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Addesso KM, Oliver JB, O'Neal PA, Youssef N. Efficacy of Nootka Oil as a Biopesticide for Management of Imported Fire Ants (Hymenoptera: Formicidae). J Econ Entomol 2017; 110:1547-1555. [PMID: 28402466 DOI: 10.1093/jee/tox114] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/11/2017] [Indexed: 06/07/2023]
Abstract
Recent concerns regarding the impact of traditional synthetic pesticides on nontarget organisms have generated demand for alternative products with lower environmental impact. This demand has led to increasing focus on plant essential oils as sources of new biopesticides. In this study, we demonstrate that the essential oil of the Alaskan yellow cedar, Cupressus nootkatensis (D. Don) Spach, has activity against hybrid imported fire ant workers, Solenopsis invicta Buren × Solenopsis richteri Forel. In digging assays, ants were repelled by nootka oil and digging continued to be suppressed by nearly 50% in nootka oil-treated sand aged 6 mo in the laboratory. Higher worker mortality was also observed in contact and fumigation assays compared to control checks. In a field drench test, mortality of mounds treated with nootka oil lagged behind mounds treated with bifenthrin treatment for 7 wk, but both nootka oil and bifenthrin had higher mortality than the untreated check at the end of the 12-wk evaluation period. In a band application evaluation, nootka oil plots maintained a 90-95% reduction in fire ant mounds from the 2nd to 17th wk, when new mounds began to intrude on the field plots. The quarantine-approved bifenthrin band treatment maintained 100% control from the 2nd to 24th wk. Although the formulation tested here did not perform to Federal Imported Fire Ant Quarantine standards, other formulations may enable this product to reach 100% control. In addition, nootka oil could be beneficial in situations where ant suppression rather than complete quarantine elimination is the management goal.
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Affiliation(s)
- K M Addesso
- Otis L. Floyd Nursery Research Center, College of Agriculture, Human and Natural Sciences, Tennessee State University, 472 Cadillac Lane, McMinnville, TN 37110
| | - J B Oliver
- Otis L. Floyd Nursery Research Center, College of Agriculture, Human and Natural Sciences, Tennessee State University, 472 Cadillac Lane, McMinnville, TN 37110
| | - P A O'Neal
- Otis L. Floyd Nursery Research Center, College of Agriculture, Human and Natural Sciences, Tennessee State University, 472 Cadillac Lane, McMinnville, TN 37110
| | - N Youssef
- Otis L. Floyd Nursery Research Center, College of Agriculture, Human and Natural Sciences, Tennessee State University, 472 Cadillac Lane, McMinnville, TN 37110
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Calkins S, Couger M, Jackson C, Zandler J, Hudgins GC, Hanafy RA, Budd C, French DP, Hoff WD, Youssef N. Draft genome sequence of Staphylococcus hominis strain Hudgins isolated from human skin implicates metabolic versatility and several virulence determinants. Genom Data 2016; 10:91-96. [PMID: 27766204 PMCID: PMC5065635 DOI: 10.1016/j.gdata.2016.10.003] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/19/2016] [Revised: 09/29/2016] [Accepted: 10/05/2016] [Indexed: 11/26/2022]
Abstract
Staphylococcus hominis is a predominant member of the human skin microbiome. We here report on the genomic analysis of Staphylococcus hominis strain Hudgins that was isolated from the wrist area of human skin. The partial genome assembly of S. hominis Hudgins consists of 2,211,863 bp of DNA with 2174 protein-coding genes and 90 RNA genes. Based on the genomic analysis of KEGG pathways, the organism is expected to be a versatile heterotroph potentially capable of hydrolyzing the sugars glucose, fructose, mannose, and the amino acids alanine, aspartate, glutamate, glycine, threonine, cysteine, methionine, valine, isoleucine, leucine, lysine, arginine, phenylalanine, tyrosine, and tryptophan for energy production through aerobic respiration, with occasional lactate and acetate fermentation. Evidence for poly-gamma glutamate capsule and type IV Com system pili were identified in the genome. Based on COG analysis, the genome of S. hominis Hudgins clusters away from the previously published S. hominis genome ZBW5.
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Affiliation(s)
- Shelby Calkins
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States
| | - M.B. Couger
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States
| | - Colin Jackson
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States
| | - Jordan Zandler
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States
| | - Garett C. Hudgins
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States
| | - Radwa A. Hanafy
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States
| | - Connie Budd
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States
| | - Donald P. French
- Department of Integrative Biology, Oklahoma State University, Stillwater, OK, United States
| | - Wouter D. Hoff
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States
| | - Noha Youssef
- 1110 S Innovation way, Stillwater, OK 74074, United States
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Avramov AP, Couger M, Hartley EL, Land C, Wellendorf R, Hanafy RA, Budd C, French DP, Hoff WD, Youssef N. Draft genome sequence of Microbacterium oleivorans strain Wellendorf implicates heterotrophic versatility and bioremediation potential. Genom Data 2016; 10:54-60. [PMID: 27699150 PMCID: PMC5035333 DOI: 10.1016/j.gdata.2016.09.005] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/19/2016] [Revised: 09/08/2016] [Accepted: 09/14/2016] [Indexed: 11/29/2022]
Abstract
Microbacterium oleivorans is a predominant member of hydrocarbon-contaminated environments. We here report on the genomic analysis of M. oleivorans strain Wellendorf that was isolated from an indoor door handle. The partial genome of M. oleivorans strain Wellendorf consists of 2,916,870 bp of DNA with 2831 protein-coding genes and 49 RNA genes. The organism appears to be a versatile mesophilic heterotroph potentially capable of hydrolysis a suite of carbohydrates and amino acids. Genomic analysis revealed metabolic versatility with genes involved in the metabolism and transport of glucose, fructose, rhamnose, galactose, xylose, arabinose, alanine, aspartate, asparagine, glutamate, serine, glycine, threonine and cysteine. This is the first detailed analysis of a Microbacterium oleivorans genome.
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Affiliation(s)
- Anton P. Avramov
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States
| | - M.B. Couger
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States
| | - Emily L. Hartley
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States
| | - Craig Land
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States
| | - Rachel Wellendorf
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States
| | - Radwa A. Hanafy
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States
| | - Connie Budd
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States
| | - Donald P. French
- Department of Integrative Biology, Oklahoma State University, Stillwater, OK, United States
| | - Wouter D. Hoff
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States
| | - Noha Youssef
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States
- Corresponding author at: 1110 S Innovation Way, Stillwater, OK 74074, United States.1110 S Innovation WayStillwaterOK74074United States
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Moghadam F, Couger MB, Russ B, Ramsey R, Hanafy RA, Budd C, French DP, Hoff WD, Youssef N. Draft genome sequence and detailed analysis of Pantoea eucrina strain Russ and implication for opportunistic pathogenesis. Genom Data 2016; 10:63-68. [PMID: 27699151 PMCID: PMC5037212 DOI: 10.1016/j.gdata.2016.09.006] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/19/2016] [Revised: 09/08/2016] [Accepted: 09/14/2016] [Indexed: 11/29/2022]
Abstract
The genus Pantoea is a predominant member of host-associated microbiome. We here report on the genomic analysis of Pantoea eucrina strain Russ that was isolated from a trashcan at Oklahoma State University, Stillwater, OK. The draft genome of Pantoea eucrina strain Russ consists of 3,939,877 bp of DNA with 3704 protein-coding genes and 134 RNA genes. This is the first report of a genome sequence of a member of Pantoea eucrina. Genomic analysis revealed metabolic versatility with genes involved in the metabolism and transport of all amino acids as well as glucose, fructose, mannose, xylose, arabinose and galactose, suggesting the organism is a versatile heterotroph. The genome also encodes an extensive secretory machinery including types I, II, III, IV, and Vb secretion systems, and several genes for pili production including the new usher/chaperone system (pfam 05,229). The implications of these systems for opportunistic pathogenesis are discussed.
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Affiliation(s)
- Farzaneh Moghadam
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States
| | - M B Couger
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States
| | - Breeanna Russ
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States
| | - Randi Ramsey
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States
| | - Radwa A Hanafy
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States
| | - Connie Budd
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States
| | - Donald P French
- Department of Integrative Biology, Oklahoma State University, Stillwater, OK, United States
| | - Wouter D Hoff
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States
| | - Noha Youssef
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States
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Hanafy RA, Couger MB, Baker K, Murphy C, O'Kane SD, Budd C, French DP, Hoff WD, Youssef N. Draft genome sequence of Micrococcus luteus strain O'Kane implicates metabolic versatility and the potential to degrade polyhydroxybutyrates. Genom Data 2016; 9:148-53. [PMID: 27583205 PMCID: PMC4993860 DOI: 10.1016/j.gdata.2016.08.006] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/19/2016] [Accepted: 08/08/2016] [Indexed: 01/03/2023]
Abstract
Micrococcus luteus is a predominant member of skin microbiome. We here report on the genomic analysis of Micrococcus luteus strain O'Kane that was isolated from an elevator. The partial genome assembly of Micrococcus luteus strain O'Kane is 2.5 Mb with 2256 protein-coding genes and 62 RNA genes. Genomic analysis revealed metabolic versatility with genes involved in the metabolism and transport of glucose, galactose, fructose, mannose, alanine, aspartate, asparagine, glutamate, glutamine, glycine, serine, cysteine, methionine, arginine, proline, histidine, phenylalanine, and fatty acids. Genomic comparison to other M. luteus representatives identified the potential to degrade polyhydroxybutyrates, as well as several antibiotic resistance genes absent from other genomes.
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Affiliation(s)
- Radwa A Hanafy
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States
| | - M B Couger
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States
| | - Kristina Baker
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States
| | - Chelsea Murphy
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States
| | - Shannon D O'Kane
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States
| | - Connie Budd
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States
| | - Donald P French
- Department of Integrative Biology, Oklahoma State University, Stillwater, OK, United States
| | - Wouter D Hoff
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States
| | - Noha Youssef
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States
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Miller NT, Fuller D, Couger MB, Bagazinski M, Boyne P, Devor RC, Hanafy RA, Budd C, French DP, Hoff WD, Youssef N. Draft genome sequence of Pseudomonas moraviensis strain Devor implicates metabolic versatility and bioremediation potential. Genom Data 2016; 9:154-9. [PMID: 27583206 PMCID: PMC4993851 DOI: 10.1016/j.gdata.2016.08.004] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/19/2016] [Accepted: 08/02/2016] [Indexed: 11/26/2022]
Abstract
Pseudomonas moraviensis is a predominant member of soil environments. We here report on the genomic analysis of Pseudomonas moraviensis strain Devor that was isolated from a gate at Oklahoma State University, Stillwater, OK, USA. The partial genome of Pseudomonas moraviensis strain Devor consists of 6016489 bp of DNA with 5290 protein-coding genes and 66 RNA genes. This is the first detailed analysis of a P. moraviensis genome. Genomic analysis revealed metabolic versatility with genes involved in the metabolism and transport of fructose, xylose, mannose and all amino acids with the exception of tryptophan and valine, implying that the organism is a versatile heterotroph. The genome of P. moraviensis strain Devor was rich in transporters and, based on COG analysis, did not cluster closely with P. moraviensis R28-S genome, the only previous report of a P. moraviensis genome with a native mercury resistance plasmid.
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Affiliation(s)
- Neil T Miller
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States
| | - Danny Fuller
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States
| | - M B Couger
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States
| | - Mark Bagazinski
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States
| | - Philip Boyne
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States
| | - Robert C Devor
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States
| | - Radwa A Hanafy
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States
| | - Connie Budd
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States
| | - Donald P French
- Department of Integrative Biology, Oklahoma State University, Stillwater, OK, United States
| | - Wouter D Hoff
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States
| | - Noha Youssef
- Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, United States
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Morrison JM, Elshahed MS, Youssef N. A multifunctional GH39 glycoside hydrolase from the anaerobic gut fungus Orpinomyces sp. strain C1A. PeerJ 2016; 4:e2289. [PMID: 27547582 PMCID: PMC4975031 DOI: 10.7717/peerj.2289] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2016] [Accepted: 07/05/2016] [Indexed: 01/05/2023] Open
Abstract
Background. The anaerobic gut fungi (phylum Neocallimastigomycota) represent a promising source of novel lignocellulolytic enzymes. Here, we report on the cloning, expression, and characterization of a glycoside hydrolase family 39 (GH39) enzyme (Bgxg1) that is highly transcribed by the anaerobic fungus Orpinomycessp. strain C1A under different growth conditions. This represents the first study of a GH39-family enzyme from the anaerobic fungi. Methods. Using enzyme activity assays, we performed a biochemical characterization of Bgxg1 on a variety of substrates over a wide range of pH and temperature values to identify the optimal enzyme conditions and the specificity of the enzyme. In addition, substrate competition studies and comparative modeling efforts were completed. Results. Contrary to the narrow range of activities (β-xylosidase or α-L-iduronidase) observed in previously characterized GH39 enzymes, Bgxg1 is unique in that it is multifunctional, exhibiting strong β-xylosidase, β-glucosidase, β-galactosidase activities (11.5 ± 1.2, 73.4 ± 7.15, and 54.6 ± 2.26 U/mg, respectively) and a weak xylanase activity (10.8 ± 1.25 U/mg), as compared to previously characterized enzymes. Further, Bgxg1 possesses extremely high affinity (as evident by the lowest K m values), compared to all previously characterized β-glucosidases, β-galactosidases, and xylanases. Physiological characterization revealed that Bgxg1 is active over a wide range of pH (3-8, optimum 6) and temperatures (25-60 °C, optimum 39 °C), and possesses excellent temperature and thermal stability. Substrate competition assays suggest that all observed activities occur at a single active site. Using comparative modeling and bioinformatics approaches, we putatively identified ten amino acid differences between Bgxg1 and previously biochemically characterized GH39 β-xylosidases that we speculate could impact active site architecture, size, charge, and/or polarity. Discussion. Collectively, the unique capabilities and multi-functionality of Bgxg1 render it an excellent candidate for inclusion in enzyme cocktails mediating cellulose and hemicellulose saccharification from lignocellulosic biomass.
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Affiliation(s)
- Jessica M Morrison
- Department of Microbiology and Molecular Genetics, Oklahoma State University , Stillwater , OK , USA
| | - Mostafa S Elshahed
- Department of Microbiology and Molecular Genetics, Oklahoma State University , Stillwater , OK , USA
| | - Noha Youssef
- Department of Microbiology and Molecular Genetics, Oklahoma State University , Stillwater , OK , USA
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Gruninger RJ, Puniya AK, Callaghan TM, Edwards JE, Youssef N, Dagar SS, Fliegerova K, Griffith GW, Forster R, Tsang A, McAllister T, Elshahed MS. Anaerobic fungi (phylum Neocallimastigomycota): advances in understanding their taxonomy, life cycle, ecology, role and biotechnological potential. FEMS Microbiol Ecol 2014; 90:1-17. [PMID: 25046344 DOI: 10.1111/1574-6941.12383] [Citation(s) in RCA: 201] [Impact Index Per Article: 20.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2014] [Revised: 07/03/2014] [Accepted: 07/07/2014] [Indexed: 02/05/2023] Open
Abstract
Anaerobic fungi (phylum Neocallimastigomycota) inhabit the gastrointestinal tract of mammalian herbivores, where they play an important role in the degradation of plant material. The Neocallimastigomycota represent the earliest diverging lineage of the zoosporic fungi; however, understanding of the relationships of the different taxa (both genera and species) within this phylum is in need of revision. Issues exist with the current approaches used for their identification and classification, and recent evidence suggests the presence of several novel taxa (potential candidate genera) that remain to be characterised. The life cycle and role of anaerobic fungi has been well characterised in the rumen, but not elsewhere in the ruminant alimentary tract. Greater understanding of the 'resistant' phase(s) of their life cycle is needed, as is study of their role and significance in other herbivores. Biotechnological application of anaerobic fungi, and their highly active cellulolytic and hemi-cellulolytic enzymes, has been a rapidly increasing area of research and development in the last decade. The move towards understanding of anaerobic fungi using -omics based (genomic, transcriptomic and proteomic) approaches is starting to yield valuable insights into the unique cellular processes, evolutionary history, metabolic capabilities and adaptations that exist within the Neocallimastigomycota.
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Atwa MA, Emara AS, Youssef N, Bayoumy NM. Serum concentration of IL-17, IL-23 and TNF-α among patients with chronic spontaneous urticaria: association with disease activity and autologous serum skin test. J Eur Acad Dermatol Venereol 2013; 28:469-74. [PMID: 23451767 DOI: 10.1111/jdv.12124] [Citation(s) in RCA: 53] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2012] [Accepted: 01/29/2013] [Indexed: 01/13/2023]
Abstract
BACKGROUND Chronic spontaneous urticaria (CSU) is a common skin disorder, which is considered in a subset of patients to be an autoimmune disorder. T helper 17 (Th17) cells are crucially involved in the pathogenesis of some autoimmune diseases. OBJECTIVES Our aim was to test the association of Th17 with CSU. We examined interleukin (IL)-17, IL-23 and tumor necrosis factor-alpha (TNF-α) serum levels in CSU patients and studied their association with urticaria activity and autologous serum skin test (ASST). SUBJECTS AND METHODS Serum concentration of IL-17, IL-23 and TNF-α were measured in 75 patients with CSU and 30 healthy control subjects. Disease activity was assessed by using urticaria activity score (UAS) as recommended by EAACI/GA(2)LEN/EDF/WAO Guidelines. RESULTS Serum concentration of IL-17, IL-23 and TNF-α were significantly higher in CSU patients as compared with the healthy control subjects (mean: 35.51 ± 31.14 vs. 4.60 ± 1.38 pg/mL; P < 0.001, 38.95 ± 27.82 vs. 9.87 ± 4.62 pg/mL; P > 0.001 and 17.93 ± 6.05 vs. 6.87 ± 3.73 pg/mL; P = 0.004, respectively). There were significant positive correlation between serum IL-17, IL-23, TNF-α and disease activity assessed by cumulative UAS for 7 days before blood sampling. The Serum concentration of IL-17, IL-23 and TNF-α were also significantly higher in ASST positive patients than in ASST negative patients. CONCLUSION Our results showed high serum levels of IL-17, IL-23 and TNF-α among CSU patients which may highlight a functional role of these cytokines in the pathogenesis of this important and common skin disease. It also may provide the rationale for new treatment strategies in chronic urticaria.
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Affiliation(s)
- M A Atwa
- Dermatology & Venereology Department, Faculty of Medicine, Suez Canal University, Ismailia, Egypt
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Oliver J, Fare D, Youssef N, Scholl S, Reding M, Ranger C, Moyseenko J, Halcomb M. Evaluation of a Single Application of Neonicotinoid and Multi-Application Contact Insecticides for Flatheaded Borer Management in Field Grown Red Maple Cultivars. ACTA ACUST UNITED AC 2010. [DOI: 10.24266/0738-2898-28.3.135] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Abstract
Two trials evaluated insecticides for flatheaded borer control and effect on red maple (Acer rubrum L.) cultivar growth over 4 years. Chrysobothris femorata (Olivier) was the only species reared from borer damaged maples during the study. Soil-applied systemic insecticides (acephate, imidacloprid, clothianidin, dinotefuran, and thiamethoxam) and trunk-applied contact insecticides (chlorpyrifos and bifenthrin) were tested. In the 2005 trial, a one-time drench of Allectus (imidacloprid + bifenthrin) or Discus (imidacloprid + cyfluthrin) provided 2 to 4 years of protection with ‘Autumn Flame’ and ‘Franksred’ from C. femorata. Soil-applied experimental imidacloprid tablets prevented borer damage in the third and fourth post-treatment years, but were not as effective as imidacloprid drenches in the first two years. Soil applied acephate tablets, chlorpyrifos (Dursban 4E) trunk sprays, or untreated control plants had borer damage each year, which totaled up to 41.7% damage by year 4 in ‘Autumn Flame’. Trunk diameter growth and tree canopy size was greater with Discus drench or imidacloprid tablet treatments than other treatments. In the 2006 trial, drenches of Allectus, Discus, or Safari 20SG (dinotefuran) applied in May and Discus or Arena 50WDG (clothianidin) drenches applied in March provided complete protection from C. femorata the first year in ‘Fairview Flame’, ‘Franksred’, and ‘October Glory’. Discus (March) drench provided four years of complete protection among the three cultivars, while other neonicotinoid drenches had 3.7–6.3% (Arena March), 3.7–12.5% (Arena May), 0–6.3% (Discus May), 0–10.3% (Safari), and 12.5–20.5% (Flagship) total damage. Ineffective treatments included an experimental imidacloprid gel (7.4–18.8% damage), acephate tablets (18.5–75.0%), Onyx Pro Insecticide (5.1–18.8%), Dursban 2E (11.1–31.3%), one imidacloprid tablet (15.4–43.8%), or untreated plants (32.1–41.0%). This study demonstrates a single application of some neonicotinoid treatments can provide multi-year C. femorata prevention, increased maple trunk growth, and provide borer protection superior to trunk sprays.
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Affiliation(s)
- J.B. Oliver
- Tennessee State University, School of Agriculture and Consumer Sciences, Otis L. Floyd Nursery Research Center, 472 Cadillac Lane, McMinnville, TN 37110
| | - D.C Fare
- Tennessee State University, School of Agriculture and Consumer Sciences, Otis L. Floyd Nursery Research Center, 472 Cadillac Lane, McMinnville, TN 37110
| | - N. Youssef
- Tennessee State University, School of Agriculture and Consumer Sciences, Otis L. Floyd Nursery Research Center, 472 Cadillac Lane, McMinnville, TN 37110
| | - S.S. Scholl
- Tennessee State University, School of Agriculture and Consumer Sciences, Otis L. Floyd Nursery Research Center, 472 Cadillac Lane, McMinnville, TN 37110
| | - M.E. Reding
- Tennessee State University, School of Agriculture and Consumer Sciences, Otis L. Floyd Nursery Research Center, 472 Cadillac Lane, McMinnville, TN 37110
| | - C.M. Ranger
- Tennessee State University, School of Agriculture and Consumer Sciences, Otis L. Floyd Nursery Research Center, 472 Cadillac Lane, McMinnville, TN 37110
| | - J.J. Moyseenko
- Tennessee State University, School of Agriculture and Consumer Sciences, Otis L. Floyd Nursery Research Center, 472 Cadillac Lane, McMinnville, TN 37110
| | - M.A. Halcomb
- Tennessee State University, School of Agriculture and Consumer Sciences, Otis L. Floyd Nursery Research Center, 472 Cadillac Lane, McMinnville, TN 37110
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Youssef N, Abd Allah E. ROLE OF ANTIOXIDANT TREATMENTS IN IMPROVING POTATO YIELD AND QUALITY. Egyptian Journal of Agricultural Sciences 2007; 58:144-158. [DOI: 10.21608/ejarc.2007.217369] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/01/2023]
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Youssef N, Simpson DR, Duncan KE, McInerney MJ, Folmsbee M, Fincher T, Knapp RM. In situ biosurfactant production by Bacillus strains injected into a limestone petroleum reservoir. Appl Environ Microbiol 2007; 73:1239-47. [PMID: 17172458 PMCID: PMC1828672 DOI: 10.1128/aem.02264-06] [Citation(s) in RCA: 93] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2006] [Accepted: 12/06/2006] [Indexed: 11/20/2022] Open
Abstract
Biosurfactant-mediated oil recovery may be an economic approach for recovery of significant amounts of oil entrapped in reservoirs, but evidence that biosurfactants can be produced in situ at concentrations needed to mobilize oil is lacking. We tested whether two Bacillus strains that produce lipopeptide biosurfactants can metabolize and produce their biosurfactants in an oil reservoir. Five wells that produce from the same Viola limestone formation were used. Two wells received an inoculum (a mixture of Bacillus strain RS-1 and Bacillus subtilis subsp. spizizenii NRRL B-23049) and nutrients (glucose, sodium nitrate, and trace metals), two wells received just nutrients, and one well received only formation water. Results showed in situ metabolism and biosurfactant production. The average concentration of lipopeptide biosurfactant in the produced fluids of the inoculated wells was about 90 mg/liter. This concentration is approximately nine times the minimum concentration required to mobilize entrapped oil from sandstone cores. Carbon dioxide, acetate, lactate, ethanol, and 2,3-butanediol were detected in the produced fluids of the inoculated wells. Only CO(2) and ethanol were detected in the produced fluids of the nutrient-only-treated wells. Microbiological and molecular data showed that the microorganisms injected into the formation were retrieved in the produced fluids of the inoculated wells. We provide essential data for modeling microbial oil recovery processes in situ, including growth rates (0.06 +/- 0.01 h(-1)), carbon balances (107% +/- 34%), biosurfactant production rates (0.02 +/- 0.001 h(-1)), and biosurfactant yields (0.015 +/- 0.001 mol biosurfactant/mol glucose). The data demonstrate the technical feasibility of microbial processes for oil recovery.
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Affiliation(s)
- N Youssef
- Department of Botany and Microbiology, University of Oklahoma, Norman, OK 73019, USA
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Touraine P, Youssef N, Alyanakian MA, Lechat X, Balleyguier C, Duflos C, Dib A, May A, Carel JC, Laborde K, Sigal-Zafrani B, Goffin V, Eymard B, Boitard C, Brousse N, Kuttenn F. Breast inflammatory gigantomastia in a context of immune-mediated diseases. J Clin Endocrinol Metab 2005; 90:5287-94. [PMID: 15972574 DOI: 10.1210/jc.2005-0642] [Citation(s) in RCA: 34] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Abstract
CONTEXT Localized breast lesions have been described in lupic or diabetic patients. However, the description of breast gigantomastia in women presenting with autoimmune diseases has not been reported. SETTING The study took place within the Department of Endocrinology and Reproductive Medicine, Necker Hospital, Paris, France. PATIENTS We describe eight patients with inflammatory gigantomastia, occurring in a context of immune-mediated diseases: myasthenia, chronic arthritis, or thyroiditis. MAIN OUTCOME MEASURES Together with hormonal, immunological, and breast magnetic resonance imaging (MRI) evaluation, breast histology enabled us to perform immunocytochemical and indirect immunofluorescence studies. Control sera were obtained from patients with (n = 10) and without (n = 7) antinuclear antibodies. RESULTS Six of the eight patients developed gigantomastia either at puberty or during pregnancy. Neither a hormonal oversecretion nor a specific immunological pattern was observed. All patients except one presented antinuclear antibodies. Histological study revealed a diffuse, stromal hyperplasia and a severe atrophy of the lobules. A rarefaction of adipocytes was also noted, as previously suggested on MRI. There was a perilobular lymphocytic infiltrate made of CD3+ lymphocytes. Study of sera from five of six cases of gigantomastia showed a nuclear immunofluorescence pattern in normal mammary ductal and lobular glandular epithelium, as well as in kidney and intestine epithelial cells. In control sera, a nuclear signal was observed only when antinuclear antibodies were present. CONCLUSIONS We suggest that breast tissue may be a target tissue in autoimmune diseases, this process being favored by the hormonal milieu. However, the precise mechanism of such association is not individualized. The fact that stromal hyperplasia is the main histological feature justifies the search for the involvement of growth factors in such a process.
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Affiliation(s)
- P Touraine
- Department of Endocrinology and Reproductive Medicine, Hôpital Necker, 149, rue de Sèvres, 75743 Paris Cedex 15, France.
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Vannelli P, Youssef N, Rosh J, Oppenheimer J. Exploring the link between eosinophilic esophagitis and esophageal foreign bodies in the pediatric population. J Allergy Clin Immunol 2005. [DOI: 10.1016/j.jaci.2004.12.971] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Youssef N, Petitjean B, Bonte H, Terris B, de Saint Maur PP, Fléjou JF. Non-alcoholic duct destructive chronic pancreatitis: a histological, immunohistochemical and in-situ apoptosis study of 18 cases. Histopathology 2004; 44:453-61. [PMID: 15139993 DOI: 10.1111/j.1365-2559.2004.01862.x] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Abstract
AIMS To assess retrospectively pancreatic changes in non-alcoholic duct-destructive chronic pancreatitis and to investigate the role of apoptosis in duct destruction. METHODS AND RESULTS Eighteen patients (mean age 46 years, nine women and nine men) underwent pancreatic resection for suspected pancreatic tumour and were diagnosed as having non-alcoholic duct-destructive chronic pancreatitis. We performed a morphological study either semiquantitatively (fibrosis and inflammation) or quantitatively (CD3+ intraepithelial lymphocytes, M30 and TUNEL+ apoptotic cells). The results were compared with those obtained in 10 cases of chronic alcoholic pancreatitis and nine cases of chronic obstructive pancreatitis. Pancreatic changes were diffuse and heterogeneous in 14 cases, but segmental in four cases. The main pancreatic lesions were ductal epithelial alteration, periductal inflammation and fibrosis. There were no cysts or calcifications. We found a marked increase in mast cells in the infiltrate, a slight increase in TiA1+ lymphocytes and in intraepithelial lymphocytes compared with other types of chronic pancreatitis. No significant increase in ductal apoptosis was observed. CONCLUSION Non-alcoholic duct-destructive chronic pancreatitis is a well-defined pathological entity, distinct from alcoholic and obstructive chronic pancreatitis. Our results indicate that apoptosis probably does not play a major role in ductal alterations.
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Affiliation(s)
- N Youssef
- Department of Pathology, Saint-Antoine Hospital, Paris, France.
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Abstract
Telomerase enzymatic activity has been detected in most human malignant tumours including hepatocellular carcinoma. In order to assess the cellular source, the topographic distribution, and the chronology of telomerase re-expression during human liver carcinogenesis, an in situ technique derived from the standard TRAP (telomeric repeat amplification protocol) assay was set up that allowed the detection of telomerase enzyme activity at the cellular level on frozen liver tissue sections. In situ TRAP (ISTRAP) was performed on 27 hepatocellular carcinomas (HCCs) and 57 non-tumour livers, including normal liver without HCC, liver samples adjacent to tumour with and without hepatic cirrhosis, and biopsies of chronic hepatitis. In HCC, telomerase was detected in the nuclei of liver tumour cells in 23/27 cases (85%), with a heterogeneous distribution within the tumour. This signal was also detected in clusters of hepatocytes in 16/26 (61%) samples of liver adjacent to HCC, in 10/23 (43%) cases of chronic viral hepatitis without adjacent HCC, and in scattered nuclei of 2/8 histologically normal livers. Comparison of the results obtained with ISTRAP and standard TRAP assays on tissue extracts suggests a gain in sensitivity with the in situ technique. This study confirms that telomerase is expressed in most HCCs and suggests that focal telomerase reactivation is an early event during human liver carcinogenesis. ISTRAP is a sensitive technique that allows the study of telomerase expression in the morphological context.
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Affiliation(s)
- N Youssef
- Service d'Anatomie Pathologique, Hôpital de Bicêtre, Université Paris Sud, EA 1602, 78 Rue de Général Leclerc, 94275 Le Kremlin-Bicêtre Cedex, France
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Paradis V, Youssef N, Dargère D, Bâ N, Bonvoust F, Deschatrette J, Bedossa P. Replicative senescence in normal liver, chronic hepatitis C, and hepatocellular carcinomas. Hum Pathol 2001; 32:327-32. [PMID: 11274643 DOI: 10.1053/hupa.2001.22747] [Citation(s) in RCA: 234] [Impact Index Per Article: 10.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
There is growing evidence that senescent cells accumulate in vivo and are associated with the aging process in parallel with the progressive erosion of telomeres. Because recent data show that telomere shortening is involved in the pathogenesis of liver cirrhosis, we looked for replicative senescence cells in normal livers, chronic hepatitis C, and hepatocellular carcinoma (HCC). Replicative senescent cells were detected on liver tissue cryosections using expression of a specific marker, senescence-associated beta-galactosidase, a cytoplasmic enzyme detected at pH 6. A total of 57 frozen liver samples (15 normal liver, 32 chronic hepatitis C, and 10 HCCs) were studied. Replicative senescence was graded as absent in 56% of cases (32 of 57) and present in 44% (25 of 57). Replicative senescence was considered present in 3 of 15 normal livers (20%), 16 of 32 chronic hepatitis cases (50%), and 6 of 10 HCCs (60%). In the group of nontumoral livers, the presence of senescent cells in liver was associated with older age (P =.03). In the group with chronic hepatitis C, fibrosis stage, but not activity grade, was significantly correlated with the accumulation of replicative senescent cells (P <.001). Finally, beta-Gal staining in nontumoral tissue was strongly correlated with the presence of HCC in the surrounding liver (P <.001). These results suggest that chronic hepatitis C represents a relevant model of accelerated replicative senescence and that accumulation of replicative senescent cells predispose to HCC development. Detection of replicative senescent cells may then serve as a predictive marker of a hepatocellular carcinoma in the surrounding tissue. HUM PATHOL 32:327-332.
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Affiliation(s)
- V Paradis
- Service d'Anatomie Pathologique, Hôpital de Bicêtre, Le Kremlin-Bicêtre, France
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Youssef N, Vabres P, Buisson T, Brousse N, Fraitag S. Two unusual tumors in a patient with xeroderma pigmentosum: atypical fibroxanthoma and basosquamous carcinoma. J Cutan Pathol 1999; 26:430-5. [PMID: 10563498 DOI: 10.1111/j.1600-0560.1999.tb01870.x] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Xeroderma pigmentosum (XP) is a rare autosomal recessive disease, characterized by a genetic defect in DNA repair. The consequence is a high incidence of skin cancers on sun-exposed cutaneous surfaces of affected children. First lesions appear in the first years of life: telangiectasia, actinic keratosis and keratoacanthomas. Squamous cell and basal cell carcinomas are the most frequent neoplasms. We report the case of a 6-year-old girl affected with XP, who developed two unusual tumors: an atypical fibroxanthoma and a basosquamous carcinoma. In both tumors, immunohistochemical study showed abnormal accumulation of the p53 protein, suggesting the presence of mutation of the p53 tumor suppressor gene. Such p53 mutations may be ultraviolet (UV)-induced, as they are frequently observed in tumors occurring in XP.
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MESH Headings
- Biomarkers, Tumor/biosynthesis
- Carcinoma, Basosquamous/complications
- Carcinoma, Basosquamous/metabolism
- Carcinoma, Basosquamous/pathology
- Child
- Female
- Histiocytoma, Benign Fibrous/complications
- Histiocytoma, Benign Fibrous/metabolism
- Histiocytoma, Benign Fibrous/pathology
- Humans
- Immunohistochemistry
- Neoplasms, Multiple Primary/complications
- Neoplasms, Multiple Primary/metabolism
- Neoplasms, Multiple Primary/pathology
- Skin Neoplasms/complications
- Skin Neoplasms/metabolism
- Skin Neoplasms/pathology
- Tumor Suppressor Protein p53/biosynthesis
- Xeroderma Pigmentosum/complications
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Affiliation(s)
- N Youssef
- Department of Pathology, Necker-Enfants Malades Hospital, Paris, France
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Ozand PT, Rashed M, Millington DS, Sakati N, Hazzaa S, Rahbeeni Z, al Odaib A, Youssef N, Mazrou A, Gascon GG. Ethylmalonic aciduria: an organic acidemia with CNS involvement and vasculopathy. Brain Dev 1994; 16 Suppl:12-22. [PMID: 7726376 DOI: 10.1016/0387-7604(94)90092-2] [Citation(s) in RCA: 37] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
Five infants from 3 families, one Egyptian, two Yemeni, are described with a progressive encephalopathy, four of whom have been studied in detail. All patients showed vascular lesions of the skin, characterized by waxing and waning petechiae and ecchymoses. Acrocyanosis was present in three patients. All patients showed retinal lesions characterized by tortuous veins. Protracted diarrhea was not a consistent finding, although they had metabolic crisis in association with diarrhea. They did not show failure to thrive. The neurologic symptoms were indicative of a progressive pyramidal tract disease. Three patients died following sudden emergence of severe basal ganglia, putaminal and head of caudate lesions. In one patient the CT changes in brain were suggestive of infarction. The patients who died manifested pulmonary congestion, or wet lung, and respiratory difficulties during the terminal stage of the disease. In all patients before and during the terminal event, mild-to-moderate hematuria, and in two RBC in CSF, was observed. In one patient there was mild hemoperitoneum at the terminal event. The urine organic acids indicated increased excretion of ethylmalonic, methylsuccinic, glutaric, and adipic acids. The patients invariably showed lactic acidosis, but no ketosis, during and in between the acidotic attacks of the disease. The acylcarnitine profile in blood of two patients showed a pronounced increase in C4 and C5 carnitine esters. In three patients, biopsies from petechiae indicated absence of an immune event, showing only fresh hemorrhage. An immunologic study in one patient was normal for the suppressor:cytotoxic lymphocyte ratio and concentration of interleukin-2 receptor during and in between hemorrhagic attacks. The cytochrome c oxidase activity in fibroblasts was normal. The rate of oxidation of glucose, leucine, isoleucine, valine, propionate and butyrate by fibroblasts was normal. The disease is not responsive to treatment with riboflavin, ascorbic acid, vitamin E, glycine, or carnitine. One patient remained stable on prolonged large doses of methylprednisolone. The biochemical defect leading to ethylmalonic aciduria in this disease remains unknown.
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Affiliation(s)
- P T Ozand
- Department of Pediatrics, King Faisal Specialist Hospital and Research Centre, Riyadh, Saudi Arabia
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Youssef N, Saker R, Mourad E, Mohamed E. Utilization of growth monitoring to evaluate the effects of a teaching program given to mothers of infants about nutrition. New Egypt J Med 1993; 8:313-9. [PMID: 12292366] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Key Words] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 04/19/2023]
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Abstract
Aspartoacylase, the enzyme whose activity is deficient in infantile central nervous system spongy degeneration (Canavan-Van Bogaert-Bertrand disease), is detected as an approximately 59-kD protein in the Sephadex G-200 filtration of normal fibroblast extracts. The enzyme activity in homogenates of fibroblasts is protected by leupeptin, a protease inhibitor. In the absence of leupeptin, 90% of aspartoacylase activity is lost. In some patients with infantile spongy degeneration, no activity (less than 2%) can be detected. In some other patients with residual activity in fibroblasts, two separate peaks of enzyme are eluted with molecular weight corresponding to approximately 59 and 19 kD. Aspartoacylase activity in this latter group is protected to the same extent by the presence of leupeptin. However, the elution of two peaks is independent of the presence of leupeptin. This study indicates biochemical heterogeneity in the pathogenesis of infantile spongy degeneration.
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Affiliation(s)
- S B Subramanyam
- Department of Biological and Medical Research, King Faisal Specialist Hospital and Research Centre, Riyadh, Saudi Arabia
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Youssef N, Berrafato V, Mida M, Vitse M, Boulanger JC. [Evolution of the parietal incision in cesarean sections]. Rev Fr Gynecol Obstet 1989; 84:651-7. [PMID: 2530613] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
This concerns a multicenter study including 51 centers of the North, Picardy and Champagne areas, 35 public institutions and 16 private institutions. This study was carried out on 7,216 records of Caesarean sections, collected between 1978 and 1983. The objective of this study was to specify maternal and fetal morbidity in Caesarean sections. In this study, the authors attempted to establish a correlation between this morbidity and the parietal incision, as well as compare the responsibility of each of the two incisions that were performed: midline infraumbilical and Pfannenstiel's incision. From a neonatal standpoint, they have demonstrated that the type of parietal incision has no bearing on the condition of the child at birth, in spite of a slightly longer extraction time in the Pfannenstiel incision. From a maternal standpoint, they found a similar number of wall abscesses and wound dehiscence. Abdominal wall hematomas are slightly more frequent with the Pfannenstiel incision and this difference is significant. The reservations formulated concerning transverse incisions and especially the Pfannenstiel incision do not appear to be justified.
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Affiliation(s)
- N Youssef
- Service de Gynécologie-Obstétrique, CHR de Chauny
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Gad ZM, Youssef N, Sherif AA, Hasab AA, Mahfouz AA, Hassan MN. An epidemiologic study of the fungal skin flora among the elderly in Alexandria. Epidemiol Infect 1987; 99:213-9. [PMID: 3609174 PMCID: PMC2249177 DOI: 10.1017/s0950268800067042] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023] Open
Abstract
The fungal skin flora of a sample of 205 elderly persons in Alexandria, drawn by cluster sampling probability technique, was investigated. Pathogenic yeasts were isolated from 18.6% and 10.3% of skin and nails respectively. Candida albicans (16.1% and 7.3%) was prominent. A low prevalence of dermatophytes grown on agar (2.4% from skin and 2.9% from nails) was observed. In contrast, saprophytic filamentous fungi comprised 45.4 and 50.7% of skin and nails samples respectively. This study showed no statistically significant effect of sociodemographic variables (sex, marital status, crowding index, and income per capita) on the skin flora. There was no statistical significant difference between elderly diabetics and non-diabetics as regards fungal skin flora.
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Abstract
Antibiotic production by dermatophyte fungi has been demonstrated in vivo in the lesions of patients with dermatomycoses. Patients infected with antibiotic-producing strains more frequently carried cocci resistant to penicillin and other antibiotics than did patients infected with non-producer strains. The total bacterial load was less in lesions caused by producer fungi. In vitro studies demonstrated the selection of penicillin-resistant S. aureus from mixed populations of resistant and sensitive cells.
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Abstract
Thirty-two clinical isolates of anthropophlic dermatophytes were examined for their capacity to produce antibiotics in liquid culture and on human stratum corneum in vitro. Antibiotics were detected and classified using agar diffusion bioassays and chromatographic analysis. Twenty-four isolates produced antibiotic substances in liquid culture filtrates; some strains produced more than one antibiotic. Only four isolates produced detectable levels of antibiotics when grown on stratum corneum unless an artificial sweat mixture was used as a nutrient supplement, when the number rose 11. Respresentatives of all species studied produced benzyl penicillin-like substances. Some Trichophyton isolates also produced streptomycin-like antibiotics, a characteristic previously unrecorded for eukaryotic organisms. Other antibiotics, which apart from azalomycin F could not be properly classified, were produced by Epidermophyton floccosum. Antibiotic production occurred over the normal skin temperature range but sometimes the type of antibiotic produced and the frequency of detection appeared to be influenced by the incubation temperature.
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Noble WC, Clayton YM, Youssef N, Holt T, Wyborn C. Proceedings: The production of antibiotics by Trichophyton and Epidermophyton species. Br J Dermatol 1976; 95 Suppl 14:16-7. [PMID: 1276043 DOI: 10.1111/j.1365-2133.1976.tb07886.x] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
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Abstract
The application of a modified form of the Onsager equation at the condition of infinite dilution of a polar solute in a polar solvent leads to reasonable dipole moments for water, pyridine, acetone, tert-butyl alcohol, n-butyl alcohol, and β-octyl alcohol, except in the case of water in tert-butyl alcohol at 30 and 40 °C and the case of acetone in n-butyl alcohol at 30 to 50 °C. The initial decrease of the dielectric constant of solvent by addition of solute in each of these two cases is associated with a reduction in the Kirkwood g-factor of solute. In all 12 systems investigated, strong hydrogen bonding occurs between solute and solvent molecules and often between solvent molecules themselves. It is thought that this equation must fail when short-range interactions assume predominant importance, but why it works so well for those cases which are also strongly interacting systems is not clear.
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