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Alcazar J, Ghazi Vakili M, Kalayci CB, Perdomo-Ortiz A. Enhancing combinatorial optimization with classical and quantum generative models. Nat Commun 2024;15:2761. [PMID: 38553469 PMCID: PMC10980691 DOI: 10.1038/s41467-024-46959-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2021] [Accepted: 03/15/2024] [Indexed: 04/02/2024]  Open
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Rudolph MS, Miller J, Motlagh D, Chen J, Acharya A, Perdomo-Ortiz A. Synergistic pretraining of parametrized quantum circuits via tensor networks. Nat Commun 2023;14:8367. [PMID: 38102108 PMCID: PMC10724286 DOI: 10.1038/s41467-023-43908-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2022] [Accepted: 11/23/2023] [Indexed: 12/17/2023]  Open
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Iouchtchenko D, Gonthier JF, Perdomo-Ortiz A, Melko RG. Neural network enhanced measurement efficiency for molecular groundstates. Mach Learn : Sci Technol 2023. [DOI: 10.1088/2632-2153/acb4df] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/11/2023]  Open
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Alcazar J, Leyton-Ortega V, Perdomo-Ortiz A. Classical versus quantum models in machine learning: insights from a finance application. Mach Learn : Sci Technol 2020. [DOI: 10.1088/2632-2153/ab9009] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]  Open
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Zhu D, Linke NM, Benedetti M, Landsman KA, Nguyen NH, Alderete CH, Perdomo-Ortiz A, Korda N, Garfoot A, Brecque C, Egan L, Perdomo O, Monroe C. Training of quantum circuits on a hybrid quantum computer. Sci Adv 2019;5:eaaw9918. [PMID: 31667342 PMCID: PMC6799983 DOI: 10.1126/sciadv.aaw9918] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/12/2019] [Accepted: 09/26/2019] [Indexed: 05/28/2023]
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Smelyanskiy VN, Venturelli D, Perdomo-Ortiz A, Knysh S, Dykman MI. Quantum Annealing via Environment-Mediated Quantum Diffusion. Phys Rev Lett 2017;118:066802. [PMID: 28234537 DOI: 10.1103/physrevlett.118.066802] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/05/2016] [Indexed: 06/06/2023]
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Babbush R, Perdomo-Ortiz A, O'Gorman B, Macready W, Aspuru-Guzik A. Construction of Energy Functions for Lattice Heteropolymer Models: Efficient Encodings for Constraint Satisfaction Programming and Quantum Annealing. ADVANCES IN CHEMICAL PHYSICS 2014. [DOI: 10.1002/9781118755815.ch05] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/05/2023]
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Widom JR, Lee W, Perdomo-Ortiz A, Rappoport D, Molinski TF, Aspuru-Guzik A, Marcus AH. Temperature-dependent conformations of a membrane supported zinc porphyrin tweezer by 2D fluorescence spectroscopy. J Phys Chem A 2013;117:6171-84. [PMID: 23480874 PMCID: PMC3723700 DOI: 10.1021/jp400394z] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Widom JR, Perdomo-Ortiz A, Lee W, Johnson NP, Hippel PHV, Aspuru-Guzik A, Marcus AH. Determining the Conformations of Porphyrin Dimers and Dinucleotide-Substituted DNA Constructs by 2-Dimensional Fluorescence Spectroscopy. Biophys J 2013. [DOI: 10.1016/j.bpj.2012.11.2361] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]  Open
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Widom JR, Rappoport D, Perdomo-Ortiz A, Thomsen H, Johnson NP, von Hippel PH, Aspuru-Guzik A, Marcus AH. Electronic transition moments of 6-methyl isoxanthopterin--a fluorescent analogue of the nucleic acid base guanine. Nucleic Acids Res 2012. [PMID: 23185042 PMCID: PMC3553960 DOI: 10.1093/nar/gks1148] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]  Open
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Perdomo-Ortiz A, Widom JR, Lott GA, Aspuru-Guzik A, Marcus AH. Conformation and electronic population transfer in membrane-supported self-assembled porphyrin dimers by 2D fluorescence spectroscopy. J Phys Chem B 2012;116:10757-70. [PMID: 22882118 DOI: 10.1021/jp305916x] [Citation(s) in RCA: 58] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
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Perdomo-Ortiz A, Dickson N, Drew-Brook M, Rose G, Aspuru-Guzik A. Finding low-energy conformations of lattice protein models by quantum annealing. Sci Rep 2012;2:571. [PMID: 22891157 PMCID: PMC3417777 DOI: 10.1038/srep00571] [Citation(s) in RCA: 89] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2012] [Accepted: 07/16/2012] [Indexed: 12/02/2022]  Open
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Kassal I, Whitfield JD, Perdomo-Ortiz A, Yung MH, Aspuru-Guzik A. Simulating Chemistry Using Quantum Computers. Annu Rev Phys Chem 2011;62:185-207. [PMID: 21166541 DOI: 10.1146/annurev-physchem-032210-103512] [Citation(s) in RCA: 193] [Impact Index Per Article: 14.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Arce JC, Perdomo-Ortiz A, Zambrano ML, Mujica-Martínez C. Envelope molecular-orbital theory of extended systems. I. Electronic states of organic quasilinear nanoheterostructures. J Chem Phys 2011;134:104103. [PMID: 21405152 DOI: 10.1063/1.3559148] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
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