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Ho DJ, Agaram NP, Frankel AO, Lathara M, Catchpoole D, Keller C, Hameed MR. Toward Deploying a Deep Learning Model for Diagnosis of Rhabdomyosarcoma. Mod Pathol 2024; 37:100421. [PMID: 38335856 DOI: 10.1016/j.modpat.2024.100421] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2023] [Accepted: 12/23/2023] [Indexed: 02/12/2024]
Affiliation(s)
- David Joon Ho
- Department of Pathology and Laboratory Medicine, Memorial Sloan Kettering Cancer Center, New York, New York; Department of Cancer AI and Digital Health, Graduate School of Cancer Science and Policy, National Cancer Center, Goyang, Republic of Korea
| | - Narasimhan P Agaram
- Department of Pathology and Laboratory Medicine, Memorial Sloan Kettering Cancer Center, New York, New York
| | - Arthur O Frankel
- Children's Cancer Therapy Development Institute, Hillsboro, Oregon
| | | | - Daniel Catchpoole
- The Tumor Bank, the Children's Cancer Research Unit, Kids Research, the Children's Hospital at Westmead, Sydney, New South Wales, Australia
| | - Charles Keller
- Children's Cancer Therapy Development Institute, Hillsboro, Oregon
| | - Meera R Hameed
- Department of Pathology and Laboratory Medicine, Memorial Sloan Kettering Cancer Center, New York, New York.
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Frankel AO, Lathara M, Shaw CY, Wogmon O, Jackson JM, Clark MM, Eshraghi N, Keenen SE, Woods AD, Purohit R, Ishi Y, Moran N, Eguchi M, Ahmed FUA, Khan S, Ioannou M, Perivoliotis K, Li P, Zhou H, Alkhaledi A, Davis EJ, Galipeau D, Randall RL, Wozniak A, Schoffski P, Lee CJ, Huang PH, Jones RL, Rubin BP, Darrow M, Srinivasa G, Rudzinski ER, Chen S, Berlow NE, Keller C. Correction to: Machine learning for rhabdomyosarcoma histopathology. Mod Pathol 2022; 35:1496. [PMID: 35578013 DOI: 10.1038/s41379-022-01098-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Arthur O Frankel
- Children's Cancer Therapy Development Institute, Beaverton, OR, 97005, USA
| | | | - Celine Y Shaw
- Children's Cancer Therapy Development Institute, Beaverton, OR, 97005, USA
| | - Owen Wogmon
- Children's Cancer Therapy Development Institute, Beaverton, OR, 97005, USA
| | - Jacob M Jackson
- Children's Cancer Therapy Development Institute, Beaverton, OR, 97005, USA
| | - Mattie M Clark
- Children's Cancer Therapy Development Institute, Beaverton, OR, 97005, USA
| | - Navah Eshraghi
- Children's Cancer Therapy Development Institute, Beaverton, OR, 97005, USA
| | - Stephanie E Keenen
- Children's Cancer Therapy Development Institute, Beaverton, OR, 97005, USA
| | - Andrew D Woods
- Children's Cancer Therapy Development Institute, Beaverton, OR, 97005, USA
| | - Reshma Purohit
- Children's Cancer Therapy Development Institute, Beaverton, OR, 97005, USA
| | - Yukitomo Ishi
- Department of Neurosurgery, Hokkaido University School of Medicine, Sapporo, 060-8638, Japan
| | - Nirupama Moran
- Department of Otorhinolaryngology, Assam Medical College and Hospital, Assam, 786002, India
| | - Mariko Eguchi
- Department of Pediatrics, Ehime University Graduate School of Medicine, Ehime, 791-0295, Japan
| | - Farhat Ul Ain Ahmed
- Department of Obstetrics and Gynaecology, Fatima Memorial Hospital, Lahore, Pakistan
| | - Sara Khan
- Division of Haematology/Oncology, The Hospital for Sick Children, Toronto, ON, M5G 1×8, Canada
| | - Maria Ioannou
- Department of Pathology, University of Thessaly, Biopolis Larisa, 41110, Greece
| | | | - Pin Li
- Department of Urology, Bayi Children's Hospital, 100700, Beijing, China
| | - Huixia Zhou
- Department of Urology, Bayi Children's Hospital, 100700, Beijing, China
| | - Ahmad Alkhaledi
- Department of Oncology, Damascus University Hospitals: Damascus, Damascus, Syria
| | | | - Danielle Galipeau
- OHSU Biolibrary, Oregon Health & Science University, Portland, OR, 97239, USA
| | - R L Randall
- Department of Orthopaedic Surgery, University of California Davis Health, Sacramento, CA, 95817, USA
| | - Agnieszka Wozniak
- Leuven Cancer Institute, University Hospitals Leuven, Department of Oncology & Research Unit Laboratory of Experimental Oncology, KU Leuven, Leuven, Belgium
| | - Patrick Schoffski
- Leuven Cancer Institute, University Hospitals Leuven, Department of Oncology & Research Unit Laboratory of Experimental Oncology, KU Leuven, Leuven, Belgium
| | - Che-Jui Lee
- Leuven Cancer Institute, University Hospitals Leuven, Department of Oncology & Research Unit Laboratory of Experimental Oncology, KU Leuven, Leuven, Belgium
| | - Paul H Huang
- Royal Marsden Hospital/Institute of Cancer Research, Fulham Road, London, SW3 6JJ, UK
| | - Robin L Jones
- Royal Marsden Hospital/Institute of Cancer Research, Fulham Road, London, SW3 6JJ, UK
| | - Brian P Rubin
- Pathology & Laboratory Medicine Institute, Cleveland Clinic, Cleveland, OH, 44195, USA
| | - Morgan Darrow
- Department of Pathology and Laboratory Medicine, University of California Davis Medical Center, Sacramento, CA, 95817, USA
| | | | | | - Sonja Chen
- Nationwide Children's Hospital, Columbus, OH, 43205, USA. .,Department of Pathology, Rhode Island Hospital, Providence, RI, 02903, USA.
| | - Noah E Berlow
- Children's Cancer Therapy Development Institute, Beaverton, OR, 97005, USA.
| | - Charles Keller
- Children's Cancer Therapy Development Institute, Beaverton, OR, 97005, USA.
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Frankel AO, Lathara M, Shaw CY, Wogmon O, Jackson JM, Clark MM, Eshraghi N, Keenen SE, Woods AD, Purohit R, Ishi Y, Moran N, Eguchi M, Ahmed FUA, Khan S, Ioannou M, Perivoliotis K, Li P, Zhou H, Alkhaledi A, Davis EJ, Galipeau D, Randall RL, Wozniak A, Schoffski P, Lee CJ, Huang PH, Jones RL, Rubin BP, Darrow M, Srinivasa G, Rudzinski ER, Chen S, Berlow NE, Keller C. Machine learning for rhabdomyosarcoma histopathology. Mod Pathol 2022; 35:1193-1203. [PMID: 35449398 DOI: 10.1038/s41379-022-01075-x] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2021] [Revised: 03/16/2022] [Accepted: 03/19/2022] [Indexed: 02/07/2023]
Abstract
Correctly diagnosing a rare childhood cancer such as sarcoma can be critical to assigning the correct treatment regimen. With a finite number of pathologists worldwide specializing in pediatric/young adult sarcoma histopathology, access to expert differential diagnosis early in case assessment is limited for many global regions. The lack of highly-trained sarcoma pathologists is especially pronounced in low to middle-income countries, where pathology expertise may be limited despite a similar rate of sarcoma incidence. To address this issue in part, we developed a deep learning convolutional neural network (CNN)-based differential diagnosis system to act as a pre-pathologist screening tool that quantifies diagnosis likelihood amongst trained soft-tissue sarcoma subtypes based on whole histopathology tissue slides. The CNN model is trained on a cohort of 424 centrally-reviewed histopathology tissue slides of alveolar rhabdomyosarcoma, embryonal rhabdomyosarcoma and clear-cell sarcoma tumors, all initially diagnosed at the originating institution and subsequently validated by central review. This CNN model was able to accurately classify the withheld testing cohort with resulting receiver operating characteristic (ROC) area under curve (AUC) values above 0.889 for all tested sarcoma subtypes. We subsequently used the CNN model to classify an externally-sourced cohort of human alveolar and embryonal rhabdomyosarcoma samples and a cohort of 318 histopathology tissue sections from genetically engineered mouse models of rhabdomyosarcoma. Finally, we investigated the overall robustness of the trained CNN model with respect to histopathological variations such as anaplasia, and classification outcomes on histopathology slides from untrained disease models. Overall positive results from our validation studies coupled with the limited worldwide availability of sarcoma pathology expertise suggests the potential of machine learning to assist local pathologists in quickly narrowing the differential diagnosis of sarcoma subtype in children, adolescents, and young adults.
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Affiliation(s)
- Arthur O Frankel
- Children's Cancer Therapy Development Institute, Beaverton, OR, 97005, USA
| | | | - Celine Y Shaw
- Children's Cancer Therapy Development Institute, Beaverton, OR, 97005, USA
| | - Owen Wogmon
- Children's Cancer Therapy Development Institute, Beaverton, OR, 97005, USA
| | - Jacob M Jackson
- Children's Cancer Therapy Development Institute, Beaverton, OR, 97005, USA
| | - Mattie M Clark
- Children's Cancer Therapy Development Institute, Beaverton, OR, 97005, USA
| | - Navah Eshraghi
- Children's Cancer Therapy Development Institute, Beaverton, OR, 97005, USA
| | - Stephanie E Keenen
- Children's Cancer Therapy Development Institute, Beaverton, OR, 97005, USA
| | - Andrew D Woods
- Children's Cancer Therapy Development Institute, Beaverton, OR, 97005, USA
| | - Reshma Purohit
- Children's Cancer Therapy Development Institute, Beaverton, OR, 97005, USA
| | - Yukitomo Ishi
- Department of Neurosurgery, Hokkaido University School of Medicine, Sapporo, 060-8638, Japan
| | - Nirupama Moran
- Department of Otorhinolaryngology, Assam Medical College and Hospital, Assam, 786002, India
| | - Mariko Eguchi
- Department of Pediatrics, Ehime University Graduate School of Medicine, Ehime, 791-0295, Japan
| | - Farhat Ul Ain Ahmed
- Department of Obstetrics and Gynaecology, Fatima Memorial Hospital, Lahore, Pakistan
| | - Sara Khan
- Division of Haematology/Oncology, The Hospital for Sick Children, Toronto, ON, M5G 1×8, Canada
| | - Maria Ioannou
- Department of Pathology, University of Thessaly, Biopolis Larisa, 41110, Greece
| | | | - Pin Li
- Department of Urology, Bayi Children's Hospital, Beijing, 100700, China
| | - Huixia Zhou
- Department of Urology, Bayi Children's Hospital, Beijing, 100700, China
| | - Ahmad Alkhaledi
- Department of Oncology, Damascus University Hospitals: Damascus, Damascus, Syria
| | | | - Danielle Galipeau
- OHSU Biolibrary, Oregon Health & Science University, Portland, OR, 97239, USA
| | - R L Randall
- Department of Orthopaedic Surgery, University of California Davis Health, Sacramento, CA, 95817, USA
| | - Agnieszka Wozniak
- Leuven Cancer Institute, University Hospitals Leuven, Department of Oncology & Research Unit Laboratory of Experimental Oncology, KU Leuven, Leuven, Belgium
| | - Patrick Schoffski
- Leuven Cancer Institute, University Hospitals Leuven, Department of Oncology & Research Unit Laboratory of Experimental Oncology, KU Leuven, Leuven, Belgium
| | - Che-Jui Lee
- Leuven Cancer Institute, University Hospitals Leuven, Department of Oncology & Research Unit Laboratory of Experimental Oncology, KU Leuven, Leuven, Belgium
| | - Paul H Huang
- Royal Marsden Hospital/Institute of Cancer Research, Fulham Road, London, SW3 6JJ, UK
| | - Robin L Jones
- Royal Marsden Hospital/Institute of Cancer Research, Fulham Road, London, SW3 6JJ, UK
| | - Brian P Rubin
- Pathology & Laboratory Medicine Institute, Cleveland Clinic, Cleveland, OH, 44195, USA
| | - Morgan Darrow
- Department of Pathology and Laboratory Medicine, University of California Davis Medical Center, Sacramento, CA, 95817, USA
| | | | | | - Sonja Chen
- Nationwide Children's Hospital, Columbus, OH, 43205, USA. .,Department of Pathology, Rhode Island Hospital, Providence, RI, 02903, USA.
| | - Noah E Berlow
- Children's Cancer Therapy Development Institute, Beaverton, OR, 97005, USA.
| | - Charles Keller
- Children's Cancer Therapy Development Institute, Beaverton, OR, 97005, USA.
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