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Guin S, Halder SC, Manna S, Jana AD. Quantifying plasmonic characteristics of pure and alkali doped aluminium clusters. J Mol Graph Model 2024; 127:108690. [PMID: 38056171 DOI: 10.1016/j.jmgm.2023.108690] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2023] [Revised: 11/15/2023] [Accepted: 11/28/2023] [Indexed: 12/08/2023]
Abstract
Study of plasmonic response of molecules and metal nanoclusters have drawn a considerable attention during recent times due to their various practical applications. In this study, the optical properties and the plasmonic response of our recently reported Al13+ cluster [Guin et al. Journal of Molecular Graphics and Modelling, 2020, 97, 107544] and its alkali doped counterparts [Guin et al. Journal of Molecular Modeling, 2021, 27, 235] have been investigated based on Transition dipole moment (TDM), Natural Transition Orbital (NTO) and transition inverse participation ratio (TIPR) indices. Recently these indices have been utilized by various scientists to characterize plasmonic transitions of molecular systems and metal nanoclusters. In TDM analysis, the magnitude of all the contributing TDMs associated with the molecular orbital transitions have been estimated along with the angles the individual dipoles make with the resultant dipole moment vector. A transition having at least two dominating TDM contributions along with phase matching indicate a collective or plasmonic transition. The collectiveness of orbital transitions is also corroborated through NTO and TIPR analysis. The effect of solvent medium on the optical properties and plasmonic transitions have also been studied using time dependent density functional theory in the conductor like polarizable continuum model (TDDFT-CPCM). The solvent has a strong impact on the optical properties as well as the plasmonic response of the clusters. The dielectric environment of the solvent red shifts and broadens the spectra with respect to that in the gas phase. Plasmon like excitations have been found for Li doped Al13+ cluster without solvent and Na doped Al13+ cluster in ethanol and THF.
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Affiliation(s)
- Surajit Guin
- Department of Physics, Behala College, Parnasree, Kolkata, 700060, West Bengal, India
| | - Sasthi Charan Halder
- Department of Physics, Behala College, Parnasree, Kolkata, 700060, West Bengal, India
| | - Shovan Manna
- Department of Physics, Behala College, Parnasree, Kolkata, 700060, West Bengal, India
| | - Atish Dipankar Jana
- Department of Physics, Behala College, Parnasree, Kolkata, 700060, West Bengal, India; Institute of Astronomy Space and Earth Sciences, P-177, CIT Road, Scheme 7m, Ultadanga station, Kolkata, 700054, India.
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Guin S, Halder SC, Ghosh SR, Jana AD. Electric field-driven up-and-down motion of the flexible tail of Al 13+ cluster system-a nano-scale flipper. J Mol Model 2023; 29:383. [PMID: 37987928 DOI: 10.1007/s00894-023-05781-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2023] [Accepted: 11/03/2023] [Indexed: 11/22/2023]
Abstract
CONTEXT Dynamic metal nanoclusters have become a hot area of research in the field of nanoscience and nanotechnology due to their potential applications in micro devices. One such dynamic cluster is a quasi-planar ground state (GS) Al13+ cluster which exhibits an electric field driven up and down flipping motion of the flexible tail which oscillates with respect to the mean plane. A Car-Parrinello molecular dynamics (CPMD) simulation has been carried out to understand the nature of dynamics of the cluster. CPMD simulation study reveals that the flexible tail region of the Al13+ isomeric system (two ground states M1, M2 and a transition state TS connecting them) can be engaged in a systematic up down flipping motion by the application of a transverse electric field. A saw tooth electric field of amplitude 5.19 V/nm is sufficient to induce the up-and-down flipping oscillation of the cluster, which has an average oscillation frequency of around 20 THz. AIM, NICS and AdNDP analyses also have been carried out to understand the fluxional nature of the cluster from the electronic structural perspective. Electronic structural analysis of selected optimized intermediate states in the presence of transverse electric field has also been analyzed to correlate the electronic structure with the dynamic nature of the cluster. METHODS Single-point energies of all intermediate states between two minima of Al13+ clusters connected through a transition state cluster. Optimized geometries of Al13+ clusters in the presence of electric field of different strengths have been carried out by using the Gaussian 03 package. 6-311 + G(d) basis set and B3LYP hybrid density functional have been utilized for these studies. To establish the flipping motion, Car-Parrinello molecular dynamics (CPMD) has been performed using the cp.x module of the Quantum ESPRESSO 6.3.0 program package using the Perdew-Burke-Ernzerhof (PBE) functional, plane-wave basis set and ultrasoft pseudopotentials. ORTEP-3 and POV ray-3.7 software packages have been used for visualization and graphics generation. Atoms in molecule (AIM), Adaptive Natural Density Partitioning (AdNDP) analysis have been carried out using Multiwfn 3.7 program package.
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Affiliation(s)
- Surajit Guin
- Department of Physics, Behala College, Parnasree, Kolkata, 700060, West Bengal, India
| | - Sasthi Charan Halder
- Department of Physics, Behala College, Parnasree, Kolkata, 700060, West Bengal, India
| | - Sourav Ranjan Ghosh
- Department of Physics, Behala College, Parnasree, Kolkata, 700060, West Bengal, India
- Department of Physics, Heritage Institute of Technology, Kolkata, 700107, India
| | - Atish Dipankar Jana
- Department of Physics, Behala College, Parnasree, Kolkata, 700060, West Bengal, India.
- Institute of Astronomy Space and Earth Science, AJ 316, Salt Lake, Kolkata, 700091, India.
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Singha D, Sarkar S, Pal N, Jana AD. Protonation induced self-complementarity of rod-like Cu(NTA)(bpeH) units and their layered supramolecular self-assembly entrapping heptamer like water clusters. Results in Chemistry 2022. [DOI: 10.1016/j.rechem.2022.100421] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022] Open
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Guin S, Jana AD. Effect of alkali atom doping on the electronic structure and aromatic character of planar and quasi-planar Al 13+ clusters. J Mol Model 2021; 27:235. [PMID: 34333700 DOI: 10.1007/s00894-021-04845-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2021] [Accepted: 07/05/2021] [Indexed: 11/24/2022]
Abstract
A set of three Al13+ clusters, one perfectly planar, and two quasi-planar structures, have been recently reported by our group (Guin et al. Journal of Molecular Graphics and Modeling, 2020, 97, 107544). All three clusters possess bilateral symmetry with identical structural features-a set of ten aluminum atoms encircle a triangular core. The symmetry axis passes through one of the Al atoms of the central triangular core and two Al atoms located on the periphery at two opposite ends of the cluster. This set of three aluminum clusters is an example of a rare metallo-aromatic system where highly anti-aromatic islands are embedded within an aromatic sea. In the present study, we have explored the effect of doping alkali atoms (Li, Na, and K) at the positions of the Al atoms that lie on the symmetry axis of the cluster intending to understand the structural stability and the effect on the aromatic character as compared to the undoped parent clusters. Besides the electronic structural analysis, NICS and ELF studies have also been carried out to characterize the aromatic nature of the doped clusters. Interestingly, it has been found that even with the incorporation of the alkali atoms, the bilateral symmetry of the clusters remains intact, but the alkali atoms are pushed out of the original location toward the edge of the cluster, whereas the aluminum atoms remain grouped. The dipole moment of the clusters systematically increases, and the overall aromaticity of the cluster systematically decreases with the increase in the atomic number of the doped alkali atoms. Effect of alkali atom doping to Al13+ cluster.
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Affiliation(s)
- Surajit Guin
- Department of Physics, Behala College, Parnasree, Kolkata, West Bengal, 700092, India
| | - Atish Dipankar Jana
- Department of Physics, Behala College, Parnasree, Kolkata, West Bengal, 700092, India.
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Sarkar S, Ghosh SR, Brandão P, Jana AD. Role of imidazole edge to edge supramolecular interaction in the crystal packing of Cu(II)(SCN−)2(imidazole)2 complex: A novel variety of supramolecular interaction revealed by CCDC database analysis and explored through DFT computational studies. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2020.129513] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
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Islam S, Das P, Maiti S, Khan S, Maity S, Ghosh P, Jana AD, Ray PP, Mir MH. Electrically conductive Cu(II)-based 1D coordination polymer with theoretical insight. Dalton Trans 2020; 49:15323-15331. [PMID: 33169741 DOI: 10.1039/d0dt03098h] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A nitro-functionalized Cu(ii)-based one-dimensional coordination polymer (1D CP) [Cu(nip)(4-phpy)2]n (1) (H2nip = 5-nitroisophthalic acid and 4-phpy = 4-phenylpyridine) was synthesized and characterized by elemental analysis, powder X-ray diffraction (PXRD) and single crystal X-ray diffraction (SCXRD). In the solid-state self-assembly of 1, two sets of weak intermolecular forces, CHπ interaction among the axially bound 4-phpy ligands and ππ interaction among bridging nip ligands from adjacent 1D coordination polymeric chains led to 3D supramolecular packing. Interestingly compound 1 exhibited electrical conductivity in the semiconducting regime and behaved as a Schottky barrier diode.
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Affiliation(s)
- Sakhiul Islam
- Department of Chemistry, Aliah University, New Town, Kolkata 700 156, India.
| | - Pubali Das
- Department of Physics, Jadavpur University, Jadavpur, Kolkata 700 032, India.
| | - Saswati Maiti
- Department of Physics, Behala College, Parnasree, Kolkata, 700 060, India. and Department of Basic Sciences, JLD College of Engineering, Champahati, Kolkata, 700 060, India
| | - Samim Khan
- Department of Chemistry, Aliah University, New Town, Kolkata 700 156, India.
| | - Suvendu Maity
- Department of Chemistry, Jadavpur University, Jadavpur, Kolkata 700 032, India
| | - Prasanta Ghosh
- Department of Chemistry, R. K. M. Residential College, Narendrapur, Kolkata 700 103, India
| | | | - Partha Pratim Ray
- Department of Physics, Jadavpur University, Jadavpur, Kolkata 700 032, India.
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Affiliation(s)
- Sourav Ranjan Ghosh
- Department of PhysicsBehala College Parnasree Kolkata 700060 India
- Department of PhysicsHeritage Institute of Technology Kolkata 700107 India
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Dutta B, Ghosh SR, Ray A, Jana S, Sinha C, Das S, Jana AD, Mir MH. Stabilization of cyclic water tetramers and dimers in the crystal host of 2D coordination networks: electrical conductivity and dielectric studies. NEW J CHEM 2020. [DOI: 10.1039/d0nj03750h] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Construction of Zn(ii)-based 2D coordination polymers for selective recognition of water tetramers and dimers in crystal hosts and their exploitation in electrical studies.
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Affiliation(s)
- Basudeb Dutta
- Department of Chemistry
- Aliah University
- New Town
- Kolkata 700 156
- India
| | | | - Apurba Ray
- Department of Instrumentation Science
- Jadavpur University
- Kolkata 700 032
- India
| | - Srikanta Jana
- Department of Chemistry
- Jadavpur University
- Kolkata 700 032
- India
| | | | - Sachindranath Das
- Department of Instrumentation Science
- Jadavpur University
- Kolkata 700 032
- India
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Jana A, Brandão P, Jana H, Jana AD, Mondal G, Bera P, Santra A, Mahapatra AK, Bera P. Synthesis, structure and catalytic promiscuity of a napthyl-pyrazole Mn(II) complex and structure–activity relationships. J COORD CHEM 2019. [DOI: 10.1080/00958972.2019.1658192] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Affiliation(s)
- Abhimanyu Jana
- Post Graduate Department of Chemistry, Panskura Banamali College (Vidyasagar University), Midnapore (East), India
| | - Paula Brandão
- Department of Chemistry, CICECO, University of Aveiro, Aveiro, Portugal
| | - Harekrishna Jana
- Department of Microbiology, Panskura Banamali College (Vidyasagar University), Midnapore (East), India
| | | | - Gopinath Mondal
- Post Graduate Department of Chemistry, Panskura Banamali College (Vidyasagar University), Midnapore (East), India
| | - Pradip Bera
- Post Graduate Department of Chemistry, Panskura Banamali College (Vidyasagar University), Midnapore (East), India
- Department of Chemistry, Kandi Raj College, Murshidabad, India
| | - Ananyakumari Santra
- Post Graduate Department of Chemistry, Panskura Banamali College (Vidyasagar University), Midnapore (East), India
| | - Ajit Kumar Mahapatra
- Department of Chemistry, Indian Institute of Engineering Science and Technology, Howrah, India
| | - Pulakesh Bera
- Post Graduate Department of Chemistry, Panskura Banamali College (Vidyasagar University), Midnapore (East), India
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Ahmed F, Ghosh SR, Halder S, Guin S, Alam SM, Ray PP, Jana AD, Mir MH. Metal–ligand ring aromaticity in a 2D coordination polymer used as a photosensitive electronic device. NEW J CHEM 2019. [DOI: 10.1039/c8nj05526b] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
14-Membered metal–ligand ring present in a photosensitive 2D coordination polymer, [Zn2(fum)2(4-phpy)4(H2O)2] (H2fum = fumaric acid and 4-phpy = 4-phenyl pyridine) shows aromatic character as evident by the nucleus-independent chemical shifts (NICS) calculation.
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Affiliation(s)
- Faruk Ahmed
- Department of Chemistry, Aliah University
- Kolkata 700 156
- India
| | - Sourav Ranjan Ghosh
- Department of Physics, Behala College
- Kolkata
- India
- Department of Physics, Heritage Institute of Technology
- Kolkata 700 107
| | - Soumi Halder
- Department of Physics, Jadavpur University
- Kolkata 700 032
- India
| | - Surajit Guin
- Department of Physics, Behala College
- Kolkata
- India
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Jana A, Brandão P, Mondal G, Bera P, Santra A, Jana AD, Mokhamatam RB, Manna SK, Bhattacharyya N, Bera P. Synthesis, characterization, cytotoxicity effect and DNA cleavage study of symmetric dinuclear chloro and azido bridged copper(II) complexes of napthyl-pyrazole based ligand. Inorganica Chim Acta 2018. [DOI: 10.1016/j.ica.2018.06.054] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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Ahmed F, Datta J, Sarkar S, Dutta B, Jana AD, Ray PP, Mir MH. Water Tetramer Confinement and Photosensitive Schottky Behavior of a 2D Coordination Polymer. ChemistrySelect 2018. [DOI: 10.1002/slct.201801083] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Faruk Ahmed
- Department of Chemistry; Aliah University, New Town; Kolkata 700 156 India
| | - Joydeep Datta
- Department of Physics; Jadavpur University, Jadavpur; Kolkata 700 032 India
| | - Sirajuddin Sarkar
- Department of Physics; Behala College, Parnasree; Kolkata 700 060 India
| | - Basudeb Dutta
- Department of Chemistry; Aliah University, New Town; Kolkata 700 156 India
| | | | - Partha Pratim Ray
- Department of Physics; Jadavpur University, Jadavpur; Kolkata 700 032 India
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Pal N, Singha D, Jana AD. Synthesis, crystal structure, Hirshfeld surface analysis, electronic structure through DFT study and fluorescence properties of a new anthracene based organic tecton. J Mol Struct 2017. [DOI: 10.1016/j.molstruc.2017.05.074] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Chakrabarty PP, Giri S, Sen K, Saha S, Jana AD, Granda SG, Haldar S, Bera M. A phenoxo–azido assorted Schiff base copper(II) bridged dimer in trace level fluorescence sensing of a pesticide: a DFT supported phenomenon. J COORD CHEM 2016. [DOI: 10.1080/00958972.2016.1223844] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
Affiliation(s)
- Partha Pratim Chakrabarty
- Department of Chemistry, University of Calcutta, Kolkata, India
- Department of Chemistry, Acharya Prafulla Chandra College, Kolkata, India
| | - Sanjib Giri
- Department of Chemistry, University of Calcutta, Kolkata, India
| | - Kamalika Sen
- Department of Chemistry, University of Calcutta, Kolkata, India
| | - Sandip Saha
- Department of Chemistry, Acharya Prafulla Chandra College, Kolkata, India
| | | | | | - Shobhraj Haldar
- Department of Chemistry, University of Kalyani, Kalyani, India
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Saha R, Goswami S, Biswas S, Steele IM, Dey K, Jana AD, Kumar S. A dynamic metal–organic supramolecular host based on weak π-stacking interactions incorporating 2D water-chloride-methanolic supramolecular sheet. Inorganica Chim Acta 2014. [DOI: 10.1016/j.ica.2014.07.077] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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Chakrabarty PP, Saha S, Sen K, Jana AD, Dey D, Schollmeyer D, García-Granda S. Unexplored analytics of some novel 3d–4f heterometallic Schiff base complexes. RSC Adv 2014. [DOI: 10.1039/c4ra04531a] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
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Saha NC, Pradhan R, Das M, Khatun N, Mitra D, Samanta A, Slawin AM, Jana AD, Klanke J, Rentschler E. Synthesis, characterization, X-ray crystallography, and antimicrobial activities of Ni(II) and Cu(II) complexes with a salicylaldehyde-based thiosemicarbazone ligand. J COORD CHEM 2014. [DOI: 10.1080/00958972.2014.880426] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
Affiliation(s)
| | - Rajesh Pradhan
- Department of Chemistry, University of Kalyani, Nadia, India
| | - Mousumi Das
- Division of Microbiology, Department of Pharmaceutical Technology, Jadavpur University, Kolkata, India
| | - Nasima Khatun
- Division of Microbiology, Department of Pharmaceutical Technology, Jadavpur University, Kolkata, India
| | - Debmalya Mitra
- Division of Microbiology, Department of Pharmaceutical Technology, Jadavpur University, Kolkata, India
| | - Amalesh Samanta
- Division of Microbiology, Department of Pharmaceutical Technology, Jadavpur University, Kolkata, India
| | | | | | - Julia Klanke
- Institute of Inorganic and Analytical Chemistry, Johannes Gutenberg University, Mainz, Germany
| | - Eva Rentschler
- Institute of Inorganic and Analytical Chemistry, Johannes Gutenberg University, Mainz, Germany
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Biswas S, Dutta A, Dolai M, Debnath M, Jana AD, Ali M. Copper(ii) induced oxidative modification and complexation of a schiff base ligand: synthesis, crystal structure, catalytic oxidation of aromatic hydrocarbons and DFT calculation. RSC Adv 2014. [DOI: 10.1039/c4ra06078d] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
A mononuclear square planar complex [CuII(L2f)], formed from a Schiff baseH2Laand Cu2+with the concomitant oxidation of two –CH2OH groups to aldehyde, displayed catalytic oxidation of aromatic hydrocarbons.
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Affiliation(s)
- Surajit Biswas
- Department of Chemistry
- Jadavpur University
- Kolkata 700 032, India
| | - Arpan Dutta
- Department of Chemistry
- Jadavpur University
- Kolkata 700 032, India
| | - Malay Dolai
- Department of Chemistry
- Jadavpur University
- Kolkata 700 032, India
| | - Mainak Debnath
- Department of Chemistry
- Jadavpur University
- Kolkata 700 032, India
| | | | - Mahammad Ali
- Department of Chemistry
- Jadavpur University
- Kolkata 700 032, India
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Biswas D, Chakrabarty PP, Saha S, Jana AD, Schollmeyer D, García-Granda S. Ligand mediated structural diversity and role of different weak interactions in molecular self-assembly of a series of copper(II)–sodium(I) Schiff-base heterometallic complexes. Inorganica Chim Acta 2013. [DOI: 10.1016/j.ica.2013.09.011] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Mukherjee A, Dutta A, Jana AD, Patra GK. Copper(I) and silver(I) coordination assemblies of imino-pyridyl and azino-pyridyl ligands: Syntheses, crystal structures, spectroscopic and photophysical properties. Inorganica Chim Acta 2013. [DOI: 10.1016/j.ica.2013.04.012] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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Seth SK, Manna P, Singh NJ, Mitra M, Jana AD, Das A, Choudhury SR, Kar T, Mukhopadhyay S, Kim KS. Molecular architecture using novel types of non-covalent π-interactions involving aromatic neutrals, aromatic cations and π-anions. CrystEngComm 2013. [DOI: 10.1039/c2ce26577j] [Citation(s) in RCA: 120] [Impact Index Per Article: 10.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
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Chakrabarty PP, Saha S, Schollmeyer D, Boudalis AK, Jana AD, Luneau D. Azide-bridged manganese(III) one-dimensional chain: synthesis, structure, and magnetic study. J COORD CHEM 2012. [DOI: 10.1080/00958972.2012.744971] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Affiliation(s)
| | - Sandip Saha
- a Department of Chemistry , Acharya Prafulla Chandra College , Kolkata , India
| | | | | | | | - Dominique Luneau
- e Université Claude Bernard Lyon 1 Groupe de Cristallographie et Ingénierie Moléculaire Laboratoire des Multimatériaux et Interfaces (UMR 5615) Bâtiment Berthollet – Domaine Scientifique de la Doua 69622 , Villeurbanne Cedex , France
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Mondal S, Guha A, Suresh E, Jana AD, Banerjee A. Single pot synthesis of pyridine-N-oxide based polymeric complexes of cadmium and manganese: Crystal structure and luminescence property. J Mol Struct 2012. [DOI: 10.1016/j.molstruc.2012.07.006] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Jana A, Jana AD, Bhowmick I, Mistri T, Dolai M, Das KK, Panja A, Ali M. First crystallographic report on a novel 2D layer of water pentagons: L5(7) water motif enclathrating [Co(cyclam)Cl2]. INORG CHEM COMMUN 2012. [DOI: 10.1016/j.inoche.2012.06.011] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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Manna SC, Mistri S, Jana AD. A rare supramolecular assembly involving ion pairs of coordination complexes with a host–guest relationship: synthesis, crystal structure, photoluminescence and thermal study. CrystEngComm 2012. [DOI: 10.1039/c2ce25916h] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
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Banerjee I, Dolai M, Jana AD, Das KK, Ali M. σ-Aromaticity in dinuclear copper(ii) complexes: Novel interaction between perchlorate anion and σ-aromatic [Cu2X2] (X = N or O) core. CrystEngComm 2012. [DOI: 10.1039/c2ce25265a] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Dutta A, Jana AD, Gangopadhyay S, Das KK, Marek J, Marek R, Brus J, Ali M. Unprecedented π⋯π interaction between an aromatic ring and a pseudo-aromatic ring formed through intramolecular H-bonding in a bidentate Schiff base ligand: crystal structure and DFT calculations. Phys Chem Chem Phys 2011; 13:15845-53. [DOI: 10.1039/c1cp21047e] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Saha S, Biswas D, Chakrabarty PP, Jana AD, Boudalis AK, Seth SK, Kar T. Cluster based copper(II)-azide polymer: Synthesis, structure and magnetic study. Polyhedron 2010. [DOI: 10.1016/j.poly.2010.09.012] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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Choudhury SR, Lee HM, Hsiao TH, Colacio E, Jana AD, Mukhopadhyay S. Co-operation of π⋯π, Cu(II)⋯π, carbonyl⋯π and hydrogen-bonding forces leading to the formation of water cluster mimics observed in the reassessed crystal structure of [Cu(mal)(phen)(H2O)]2·3H2O (H2mal=malonic acid, phen=1,10-phenanthroline). J Mol Struct 2010. [DOI: 10.1016/j.molstruc.2009.12.048] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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Das A, Jana AD, Seth SK, Dey B, Choudhury SR, Kar T, Mukhopadhyay S, Singh NJ, Hwang IC, Kim KS. Intriguing π+−π Interaction in Crystal Packing. J Phys Chem B 2010; 114:4166-70. [DOI: 10.1021/jp910129u] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Amrita Das
- Department of Chemistry, Jadavpur University, Kolkata 700 032, India, Department of Physics, Sripat Singh College, Jiaganj, Murshidabad, West Bengal 742 123, Department of Materials Science, Indian Association for the Cultivation of Science, Jadavpur, Kolkata 700 032, India, and Center for Superfunctional Materials, Department of Chemistry, Pohang University of Science and Technology, San 31, Hyojadong, Namgu, Pohang 790-784, Korea
| | - Atish Dipankar Jana
- Department of Chemistry, Jadavpur University, Kolkata 700 032, India, Department of Physics, Sripat Singh College, Jiaganj, Murshidabad, West Bengal 742 123, Department of Materials Science, Indian Association for the Cultivation of Science, Jadavpur, Kolkata 700 032, India, and Center for Superfunctional Materials, Department of Chemistry, Pohang University of Science and Technology, San 31, Hyojadong, Namgu, Pohang 790-784, Korea
| | - Saikat Kumar Seth
- Department of Chemistry, Jadavpur University, Kolkata 700 032, India, Department of Physics, Sripat Singh College, Jiaganj, Murshidabad, West Bengal 742 123, Department of Materials Science, Indian Association for the Cultivation of Science, Jadavpur, Kolkata 700 032, India, and Center for Superfunctional Materials, Department of Chemistry, Pohang University of Science and Technology, San 31, Hyojadong, Namgu, Pohang 790-784, Korea
| | - Biswajit Dey
- Department of Chemistry, Jadavpur University, Kolkata 700 032, India, Department of Physics, Sripat Singh College, Jiaganj, Murshidabad, West Bengal 742 123, Department of Materials Science, Indian Association for the Cultivation of Science, Jadavpur, Kolkata 700 032, India, and Center for Superfunctional Materials, Department of Chemistry, Pohang University of Science and Technology, San 31, Hyojadong, Namgu, Pohang 790-784, Korea
| | - Somnath Ray Choudhury
- Department of Chemistry, Jadavpur University, Kolkata 700 032, India, Department of Physics, Sripat Singh College, Jiaganj, Murshidabad, West Bengal 742 123, Department of Materials Science, Indian Association for the Cultivation of Science, Jadavpur, Kolkata 700 032, India, and Center for Superfunctional Materials, Department of Chemistry, Pohang University of Science and Technology, San 31, Hyojadong, Namgu, Pohang 790-784, Korea
| | - Tanusree Kar
- Department of Chemistry, Jadavpur University, Kolkata 700 032, India, Department of Physics, Sripat Singh College, Jiaganj, Murshidabad, West Bengal 742 123, Department of Materials Science, Indian Association for the Cultivation of Science, Jadavpur, Kolkata 700 032, India, and Center for Superfunctional Materials, Department of Chemistry, Pohang University of Science and Technology, San 31, Hyojadong, Namgu, Pohang 790-784, Korea
| | - Subrata Mukhopadhyay
- Department of Chemistry, Jadavpur University, Kolkata 700 032, India, Department of Physics, Sripat Singh College, Jiaganj, Murshidabad, West Bengal 742 123, Department of Materials Science, Indian Association for the Cultivation of Science, Jadavpur, Kolkata 700 032, India, and Center for Superfunctional Materials, Department of Chemistry, Pohang University of Science and Technology, San 31, Hyojadong, Namgu, Pohang 790-784, Korea
| | - N. Jiten Singh
- Department of Chemistry, Jadavpur University, Kolkata 700 032, India, Department of Physics, Sripat Singh College, Jiaganj, Murshidabad, West Bengal 742 123, Department of Materials Science, Indian Association for the Cultivation of Science, Jadavpur, Kolkata 700 032, India, and Center for Superfunctional Materials, Department of Chemistry, Pohang University of Science and Technology, San 31, Hyojadong, Namgu, Pohang 790-784, Korea
| | - In-Chul Hwang
- Department of Chemistry, Jadavpur University, Kolkata 700 032, India, Department of Physics, Sripat Singh College, Jiaganj, Murshidabad, West Bengal 742 123, Department of Materials Science, Indian Association for the Cultivation of Science, Jadavpur, Kolkata 700 032, India, and Center for Superfunctional Materials, Department of Chemistry, Pohang University of Science and Technology, San 31, Hyojadong, Namgu, Pohang 790-784, Korea
| | - Kwang S. Kim
- Department of Chemistry, Jadavpur University, Kolkata 700 032, India, Department of Physics, Sripat Singh College, Jiaganj, Murshidabad, West Bengal 742 123, Department of Materials Science, Indian Association for the Cultivation of Science, Jadavpur, Kolkata 700 032, India, and Center for Superfunctional Materials, Department of Chemistry, Pohang University of Science and Technology, San 31, Hyojadong, Namgu, Pohang 790-784, Korea
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Dey B, Das A, Choudhury SR, Jana AD, Lu LP, Zhu ML, Mukhopadhyay S. Three dimensional metal–malonate frameworks with pillared layered architecture: Unusual role of metal–chelate as pillar. Inorganica Chim Acta 2010. [DOI: 10.1016/j.ica.2009.12.026] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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Das A, Dey B, Jana AD, Hemming J, Helliwell M, Lee HM, Hsiao TH, Suresh E, Colacio E, Choudhury SR, Mukhopadhyay S. Effect of protonated aminopyridines on the structural divergences of M(II)–malonate complexes (M=Cu, Ni, Co). Polyhedron 2010. [DOI: 10.1016/j.poly.2009.12.011] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Dey B, Choudhury SR, Gamez P, Vargiu AV, Robertazzi A, Chen CY, Lee HM, Jana AD, Mukhopadhyay S. Water-chloride and water-bromide hydrogen-bonded networks: influence of the nature of the halide ions on the stability of the supramolecular assemblies. J Phys Chem A 2009; 113:8626-34. [PMID: 19583236 DOI: 10.1021/jp9005422] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
Two compounds, namely, [TTPH(2)](Cl)(2) x 4 H(2)O (1) and [TTPH(2)](Br)(2) x 4 H(2)O (2), (TTP = 4'-p-tolyl-2,2':6',2''-terpyridine) were synthesized from purely aqueous media and characterized by physical techniques. In the solid-state structures of these compounds, interesting supramolecular assemblies are observed. In 1, an unusual staircase-like architecture of the tape of edge-shared planar water hexamer is of importance, where the chloride ions are at the two edges of the tape. In 2, the polymeric nature of the water-bromide assembly is of interest, where discrete open-cube water octamers are doubly bridged by bromide ions. Semiempirical and DFT calculations confirm that the nature of the anion indeed affects the topology of the water-halide assemblies. We conclude that the protonated [TTPH(2)](2+) species can act as appropriate receptors for halide ions, which in turn act as a matrix for the formation of polymeric 1D water-halide assemblies.
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Affiliation(s)
- Biswajit Dey
- Department of Chemistry, Jadavpur University, Kolkata 700 032, India
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Choudhury SR, Dey B, Das S, Robertazzi A, Jana AD, Chen CY, Lee HM, Gamez P, Mukhopadhyay S. Robust recognition of malonate and 2-amino-4-picolinium in conjunction with M(II) as a triad (M = Ni/Co/Mn): role of this highly stable hydrogen-bonded motif in driving supramolecular self-assembly. Dalton Trans 2009:7617-24. [PMID: 19759933 DOI: 10.1039/b905127a] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The crystal lattice of the three isostructural compounds , (C(6)H(8)N(2)H)(2)[M(C(3)H(2)O(4))(2)(H(2)O)(2)].4H(2)O (C(6)H(8)N(2)H = protonated 2-amino-4-picoline, M = Ni/Co/Mn, C(3)H(4)O(4) = malonate dianion; hereafter, malonate) is formed by supramolecular 2D layers. Hydrogen-bonding, pi...pi and lone pair...pi interactions play crucial role in organizing monomeric [M(II)(mal)(2)(H(2)O)(2)] units into 2D sheets along the ab plane, through the self-association between two different supramolecular building blocks, namely a tetrameric water cluster including metal-coordinated water molecules, and R(2)(2)(8) and R(2)(2)(7) hydrogen-bonded recognition synthons between 2-amino-4-picolinium and malonate. DFT calculations clearly show that the robust 2-amino-4-picolinium/malonate hydrogen-bonded motif drives the self-assembly of the supramolecular network observed.
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Dey B, Choudhury SR, Suresh E, Jana AD, Mukhopadhyay S. Use of π–π forces to steer the assembly of a NTA complex of Cu(II) into hydrogen bonded supramolecular layers (H3NTA=nitrilotriacetic acid). J Mol Struct 2009. [DOI: 10.1016/j.molstruc.2009.01.004] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Biswas C, Jana AD, Drew MG, Mostafa G, Ghosh A. Segregated self-assembly and pillaring action of aliphatic dicarboxylic acids in the super structure of Cu–picolinate complexes. Polyhedron 2009. [DOI: 10.1016/j.poly.2008.11.061] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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Mijanuddin M, Jana AD, Drew MG, Hong CS, Chattopadhyay B, Mukherjee M, Nandi M, Bhaumik A, Helliwell M, Mostafa G, Ali M. Concomitant polymorphism of an antiferromagnetically coupled dicopper(II,II) complex with single strand helical assembly: Synthesis, structure, DSC, magnetic and heterogeneous catalytic studies. Polyhedron 2009. [DOI: 10.1016/j.poly.2008.12.047] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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Ali M, Dutta D, Biswas S, Marek J, Jana AD. The first crystallographic observation of up to the third hydration layer of Cu(II) ion in an unusual ‘water-cation layer’ templated by an Anderson polyoxometallate. CrystEngComm 2009. [DOI: 10.1039/b910732k] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Dey B, Choudhury SR, Das S, Jana AD, Lu LP, Zhu ML, Dutta A, Mukhopadhyay S. A tridentate in situ generated ligand that directs the self-assembly of a transition metal complex: Synthesis and structural characterization of cis-dichloro[1-(2-aminoethyl)biguanide]copper(II) monohydrate. Polyhedron 2008. [DOI: 10.1016/j.poly.2008.06.026] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Manna SC, Jana AD, Rosair GM, Drew MG, Mostafa G, Ray Chaudhuri N. 2D parallel interpenetration of [M2(bpp)4X4] [M, Fe(II)/Co(II); bpp, 4,4′-trimethylenedipyridine; X, SCN−, SeCN− and N3−] complexes: Pseudohalide-dependent conformation of bpp. J SOLID STATE CHEM 2008. [DOI: 10.1016/j.jssc.2007.12.009] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Banerjee P, Jana AD, Mostafa G, Goswami S. Organization of the Ru2Na Moiety of a Phenazine Ligand Into a New Coordination Network Promoted by ClO4–Aromatic-π Interactions. Eur J Inorg Chem 2008. [DOI: 10.1002/ejic.200700929] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Choudhury SR, Jana AD, Chen CY, Dutta A, Colacio E, Lee HM, Mostafa G, Mukhopadhyay S. pH-triggered changes in the supramolecular self-assembly of Cu(II) malonate complexes. CrystEngComm 2008. [DOI: 10.1039/b802723d] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Ghosh R, Dipankar Jana A, Pal S, Mostafa G, Fun HK, Kumar Ghosh B. Crystal engineering through [Hg(SCN)4]2−templates: S⋯S interaction mediated 3-D parallel interpenetration in the self-assembled superstructure of [Hg(SCN)4]2−and protonated 2,2′- dipyridylamine. CrystEngComm 2007. [DOI: 10.1039/b702560b] [Citation(s) in RCA: 42] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Jana AD, Ghosh AK, Ghoshal D, Mostafa G, Chaudhuri NR. Towards rational design of supramolecular helices using linear pseudohalides in Cd(ii) - 2,2′-biimidazole system. CrystEngComm 2007. [DOI: 10.1039/b614979k] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Ghoshal D, Jana AD, Maji TK, Mostafa G. Formation of a supramolecular ladder using dinuclear dicyanamide bridged Cu(II) species: Synthesis, crystal structure and magnetic property. Inorganica Chim Acta 2006. [DOI: 10.1016/j.ica.2005.08.013] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Sarker KK, Chand BG, Jana AD, Mostafa G, Sinha C. Cd(II)–NCS/NCO complexes of 1-alkyl-2-(arylazo)imidazole: Single crystal X-ray structure of [Cd(HaaiMe)2(SCN)2]. Inorganica Chim Acta 2006. [DOI: 10.1016/j.ica.2005.10.019] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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