Population Genomics Related to Adaptation in Elite Oat Germplasm

Six hundred thirty five oat ( L.) lines and 4561 single-nucleotide polymorphism (SNP) loci were used to evaluate population structure, linkage disequilibrium (LD), and genotype-phenotype association with heading date. The first five principal components (PCs) accounted for 25.3% of genetic variation. Neither the eigenvalues of the first 25 PCs nor the cross-validation errors from = 1 to 20 model-based analyses suggested a structured population. However, the PC and = 2 model-based analyses supported clustering of lines on spring oat vs. southern United States origin, accounting for 16% of genetic variation ( < 0.0001). Single-locus -statistic () in the highest 1% of the distribution suggested linkage groups that may be differentiated between the two population subgroups. Population structure and kinship-corrected LD of = 0.10 was observed at an average pairwise distance of 0.44 cM (0.71 and 2.64 cM within spring and southern oat, respectively). On most linkage groups LD decay was slower within southern lines than within the spring lines. A notable exception was found on linkage group Mrg28, where LD decay was substantially slower in the spring subpopulation. It is speculated that this may be caused by a heterogeneous translocation event on this chromosome. Association with heading date was most consistent across location-years on linkage groups Mrg02, Mrg12, Mrg13, and Mrg24.

Development of barley (Hordeum vulgare L.) lines with altered starch granule size distribution

Microscope analysis of starches prepared from 139 barley genotypes identified a Japanese genotype, Kinai Kyoshinkai-2 (KK-2), with altered starch granule size distribution. Compared to normal barley starch, KK-2 produced consistently higher volumes of starch granules with 5-15 μm diameter and reduced volumes of starch granules with >15 μm diameter when grown in different environments. A cross between KK-2 and normal starch cultivar CDC Kendall was made and led to the production of 154 F5 lines with alterations to the normal 7:3:1 distribution for A-:B-:C-type starch granule volumes. Three F5 lines showed unimodal starch granule size distribution due to apparent lack of very small (<5.0 μm diameter) C-type starch granules, but the phenotype was accompanied by reduced grain weight and total starch concentration. Five F5 lines produced a significantly larger population of large (>15 μm diameter) A-type starch granules as compared to normal starch and showed on average a 10:4:1 distribution for A-:B-:C-type starch granule volumes. The unusual starch phenotypes displayed by the F5 lines confirm starch granule size distribution in barley can be genetically altered.

SNP discovery and chromosome anchoring provide the first physically-anchored hexaploid oat map and reveal synteny with model species

A physically anchored consensus map is foundational to modern genomics research; however, construction of such a map in oat (Avena sativa L., 2n = 6x = 42) has been hindered by the size and complexity of the genome, the scarcity of robust molecular markers, and the lack of aneuploid stocks. Resources developed in this study include a modified SNP discovery method for complex genomes, a diverse set of oat SNP markers, and a novel chromosome-deficient SNP anchoring strategy. These resources were applied to build the first complete, physically-anchored consensus map of hexaploid oat. Approximately 11,000 high-confidence in silico SNPs were discovered based on nine million inter-varietal sequence reads of genomic and cDNA origin. GoldenGate genotyping of 3,072 SNP assays yielded 1,311 robust markers, of which 985 were mapped in 390 recombinant-inbred lines from six bi-parental mapping populations ranging in size from 49 to 97 progeny. The consensus map included 985 SNPs and 68 previously-published markers, resolving 21 linkage groups with a total map distance of 1,838.8 cM. Consensus linkage groups were assigned to 21 chromosomes using SNP deletion analysis of chromosome-deficient monosomic hybrid stocks. Alignments with sequenced genomes of rice and Brachypodium provide evidence for extensive conservation of genomic regions, and renewed encouragement for orthology-based genomic discovery in this important hexaploid species. These results also provide a framework for high-resolution genetic analysis in oat, and a model for marker development and map construction in other species with complex genomes and limited resources.

Polymorphism in the barley granule bound starch synthase 1 (gbss1) gene associated with grain starch variant amylose concentration

Granule bound starch synthase 1 (GBSS1) accumulation within starch granules and structure of Gbss1 alleles were determined for nine barley ( Hordeum vulgare L.) genotypes producing amylose-free (undetectable), near-waxy (1.6-4.5%), normal (25.8%), and increased (38.0-40.8%) amylose grain starches. Compared to normal starch granules, GBSS1 accumulation was severely reduced in three near-waxy, slightly reduced in two waxy, and slightly elevated in three increased amylose starches. Gbss1 nucleotide sequence analysis for the nine genotypes distinguished them into three Gbss1 groups with several single-nucleotide polymorphisms. A new unique Q312H substitution within GBSS1 was discovered in near-waxy genotype SB94912 with reduced amylose (1.6%) concentration relative to the other two near-waxy lines, CDC Rattan and CDC Candle (4.5%). The two waxy genotype GBSS1 showed a previously described D287V change for CDC Alamo and a new G513W change for CDC Fibar. Both amino acid alterations are conserved residues within starch synthase domains involved in glucan interaction. The increased amylose genotypes showed several unique nucleotide changes within the second and fourth Gbss1 introns, but only SB94893 GBSS1 showed a unique amino acid substitution, A250T in exon 6. The Gbss1 nucleotide differences were used to design genetic markers to monitor Gbss1 alleles in genotypes with various amylose grain starches.

Barley grain constituents, starch composition, and structure affect starch in vitro enzymatic hydrolysis

The relationship between starch physical properties and enzymatic hydrolysis was determined using ten different hulless barley genotypes with variable carbohydrate composition. The ten barley genotypes included one normal starch (CDC McGwire), three increased amylose starches (SH99250, SH99073, and SB94893), and six waxy starches (CDC Alamo, CDC Fibar, CDC Candle, Waxy Betzes, CDC Rattan, and SB94912). Total starch concentration positively influenced thousand grain weight (TGW) (r(2) = 0.70, p < 0.05). Increase in grain protein concentration was not only related to total starch concentration (r(2) = -0.80, p < 0.01) but also affected enzymatic hydrolysis of pure starch (r(2) = -0.67, p < 0.01). However, an increase in amylopectin unit chain length between DP 12-18 (F-II) was detrimental to starch concentration (r(2) = 0.46, p < 0.01). Amylose concentration influenced granule size distribution with increased amylose genotypes showing highly reduced volume percentage of very small C-granules (<5 μm diameter) and significantly increased (r(2) = 0.83, p < 0.01) medium sized B granules (5-15 μm diameter). Amylose affected smaller (F-I) and larger (F-III) amylopectin chains in opposite ways. Increased amylose concentration positively influenced the F-III (DP 19-36) fraction of longer DP amylopectin chains (DP 19-36) which was associated with resistant starch (RS) in meal and pure starch samples. The rate of starch hydrolysis was high in pure starch samples as compared to meal samples. Enzymatic hydrolysis rate both in meal and pure starch samples followed the order waxy > normal > increased amylose. Rapidly digestible starch (RDS) increased with a decrease in amylose concentration. Atomic force microscopy (AFM) analysis revealed a higher polydispersity index of amylose in CDC McGwire and increased amylose genotypes which could contribute to their reduced enzymatic hydrolysis, compared to waxy starch genotypes. Increased β-glucan and dietary fiber concentration also reduced the enzymatic hydrolysis of meal samples. An average linkage cluster analysis dendrogram revealed that variation in amylose concentration significantly (p < 0.01) influenced resistant starch concentration in meal and pure starch samples. RS is also associated with B-type granules (5-15 μm) and the amylopectin F-III (19-36 DP) fraction. In conclusion, the results suggest that barley genotype SH99250 with less decrease in grain weight in comparison to that of other increased amylose genotypes (SH99073 and SH94893) could be a promising genotype to develop cultivars with increased amylose grain starch without compromising grain weight and yield.

Mapping of the oat crown rust resistance gene Pc91

Crown rust is an important disease of oat caused by Puccinia coronata Corda f. sp. avenae Eriks. Crown rust is efficiently and effectively managed through the development of resistant oat varieties. Pc91 is a seedling crown rust resistance gene that is highly effective against the current P. coronata population in North America. The primary objective of this study was to develop DNA markers linked to Pc91 for purposes of marker-assisted selection in oat breeding programs. The Pc91 locus was mapped using a population of F7-derived recombinant inbred lines developed from the cross 'CDC Sol-Fi'/'HiFi' made at the Crop Development Centre, University of Saskatchewan. The population was evaluated for reaction to P. coronata in field nurseries in 2008 and 2009. Pc91 mapped to a linkage group consisting of 44 Diversity Array Technology (DArT) markers. DArTs were successfully converted to sequence characterized amplified region (SCAR) markers. Five robust SCARs were developed from three non-redundant DArTs that co-segregated with Pc91. SCAR markers were developed for different assay systems, such that SCARs are available for agarose gel electrophoresis, capillary electrophoresis, and Taqman single nucleotide polymorphism detection. The SCAR markers accurately postulated the Pc91 status of 23 North American oat breeding lines.

Effects of processing a new low acid-detergent lignin hull, high oil groat oat cultivar (CDC SO-I) on performance of growing cattle

A new oat cultivar, CDC SO-I, with a low lignin hull and high oil groat was evaluated in backgrounding diets for steer calves, with an emphasis on the requirement for processing. Average daily gain was not different (P > 0.05) between calves fed rolled barley, rolled oat, or whole oat diets. Dry matter intake of cattle fed the rolled oat diet was greater (P = 0.04) than that of cattle fed the rolled barley or whole oat diets. Feed:gain was not affected (P = 0.13) by treatment. Results indicate the CDC SO-I oat does not require processing (i.e., rolling), and can replace barley in backgrounding diets with no negative effect on animal performance. Key words: Oat, growing cattle, feedlot, high oil, low lignin

Performance and carcass characteristics of steers fed a low acid-detergent lignin hull, high-oil groat oat in growing and finishing diets

Two trials were conducted to evaluate the performance and carcass traits of steers fed a low acid detergent lignin hull, high oil groat (LLH-HOG) oat in cattle diets. In trial 1, 400 steers (275.4 ± 20.8 kg) were fed one of two diets with barley or LLH-HOG oat at 37.8% of the diet (DM basis). Dry matter intake (DMI) was lower (P = 0.02) (7.49 vs. 7.72 kg d-1) and gain to feed improved (P < 0.01) (0.171 vs. 0.159 kg) for steers fed the oat-based diet. Calculated NEm (1.80 and 1.71 Mcal kg-1) and NEg (1.17 and 1.09 Mcal kg-1) values were greater for the oat-based diet. In trial 2, 240 steers (341.7 ± 18.1 kg) were fed one of three diets consisting of 88.2% barley, corn or oat grain, 5.1% barley silage and 6.7% supplement (DM basis). During finishing, steers on the oat diet had lower (P < 0.01) Average daily gain than barley- or corn-fed cattle (1.40, 1.69 and 1.84 kg d-1, respectively) reflecting lower (P < 0.01) DMI (9.56, 10.84 and 11.56 kg d-1, respectively). Ultrasound fat and longissimus dorsi (l. dorsi) area, carcass weight and dressing percentage were lower (P < 0.01) for steers fed the oat diet. Stearic acid content of the l. dorsi of oat-fed cattle was greater (P < 0.01) than barley- or corn-fed cattle. The ratio of polyunsaturated to saturated fatty acids in the muscle of oat- and corn-fed cattle was greater (P = 0.01) than that of barley-fed cattle. Results indicate that the energy value of the LLH-HOG oat is equivalent or superior to that of barley for growing cattle; however, research is required to identify why feed intake of finishing cattle fed this grain source is reduced. Key words: Low lignin hull, high-oil groat oat, barley, corn, cattle performance, carcass traits

Physicochemical characteristics, hydroxycinnamic acids (ferulic acid, P-coumaric acid) and their ratio, and in situ biodegradability: comparison of genotypic differences among six barley varieties

Barley contains hydroxycinnamic acids, mainly ferulic acid (FA; 3-methoxy-4-hydroxycinnamic acid) and p-coumaric acid (PCA; 4-hydroxycinnamic acid). Ferulic acid is produced via the phenylpropanoid biosynthetic pathway and covalently cross-linked to polysaccharides by ester bonds and to components of lignin mainly by ether bonds. Various studies have consistently indicated that FA is among the factors most inhibitory to the biodegradability of cell wall polysaccharides. p-Coumaric acid is also covalently linked to polysaccharides (minor) and lignin (major), but does not form the inhibitory cross-linkages as FA does and is considered to represent cell wall lignification. The objectives in this study were to (1) determine genotypic differences in physicochemical characteristics in terms of (a) two major low molecular weight hydroxycinnamic acid profiles (FA, PCA, PCA-to-FA ratio, which are associated with digestion and lignification), (b) particle size distributions (mean, median), (c) hull content, and (d) digestion-resistant fiber fractions and (2) determine genotypic differences in in situ solubilization kinetics of FA and PCA. The barley varieties grown during three consecutive years (2003, 2004, and 2005) included AC Metcalfe, CDC Dolly, McLeod, CDC Helgason, CDC Trey, and CDC Cowboy. These barleys were grown at the Kernen Crop Research Farm (KCRF, University of Saskatchewan) and managed using standard agronomic production practices. Results showed that there were significant differences in hull content (P < 0.05) among the barley varieties, with Mcleod having the highest (11% DM) and CDC Dolly and CDC Helgason the lowest hull content (9% DM). Ferulic acid ranged from 555 to 663 microg/g of DM (P < 0.05). p-Coumaric acid ranged (P < 0.05) from 283 to 345 microg/g of DM. PCA-to-FA ratios ranged (P < 0.05) from 0.49 to 0.56. Mean particle size ranged (P < 0.05) from 3.06 to 3.66 mm, and median particle size ranged (P < 0.05) from 2.71 to 3.04 mm. In situ DM degradability ranged from 44 to 49%. In situ solubilized FA fractions ranged (P < 0.05) from 60 to 72% and of PCA ranged (P < 0.05) from 71 to 81%. In conclusion, CDC Dolly was best and McLeod barley was poorest as feed barley in terms of hull and FA contents. There were significant genotypic differences in FA, PCA and their ratio, hull content, particle size distribution, and in situ solubilization of FA and PCA among the barley varieties.

New DArT markers for oat provide enhanced map coverage and global germplasm characterization

Background

Genomic discovery in oat and its application to oat improvement have been hindered by a lack of genetic markers common to different genetic maps, and by the difficulty of conducting whole-genome analysis using high-throughput markers. This study was intended to develop, characterize, and apply a large set of oat genetic markers based on Diversity Array Technology (DArT).

Results

Approximately 19,000 genomic clones were isolated from complexity-reduced genomic representations of pooled DNA samples from 60 oat varieties of global origin. These were screened on three discovery arrays, with more than 2000 polymorphic markers being identified for use in this study, and approximately 2700 potentially polymorphic markers being identified for use in future studies. DNA sequence was obtained for 2573 clones and assembled into a non-redundant set of 1770 contigs and singletons. Of these, 705 showed highly significant (Expectation < 10E-10) BLAST similarity to gene sequences in public databases. Based on marker scores in 80 recombinant inbred lines, 1010 new DArT markers were used to saturate and improve the 'Kanota' × 'Ogle' genetic map. DArT markers provided map coverage approximately equivalent to existing markers. After binning markers from similar clones, as well as those with 99% scoring similarity, a set of 1295 non-redundant markers was used to analyze genetic diversity in 182 accessions of cultivated oat of worldwide origin. Results of this analysis confirmed that major clusters of oat diversity are related to spring vs. winter type, and to the presence of major breeding programs within geographical regions. Secondary clusters revealed groups that were often related to known pedigree structure.

Conclusion

These markers will provide a solid basis for future efforts in genomic discovery, comparative mapping, and the generation of an oat consensus map. They will also provide new opportunities for directed breeding of superior oat varieties, and guidance in the maintenance of oat genetic diversity.

Chemical characteristics and in situ ruminal parameters of barley for cattle: Comparison of the malting cultivar AC Metcalfe and five feed cultivars

The objective of this study was to compare the most widely grown barley cultivar in Canada, AC Metcalfe, a malting type barley, with five feed cultivars. Barley cultivars were grown at one location during 3 consecutive years and barley samples were milled to pass through a 1-mm screen and analysed to determine nutritive value. Additional samples were passed through a roller mill with a gap set at 1.12 mm and incubated ruminally for 0, 2, 4, 8, 12, 24, and 48 h in 3 dry Holstein cows fitted with rumen cannulae. The rate and extent of rumen digestion were estimated. AC Metcalfe had a higher (P < 0.001) concentration of NDF, and lower (P < 0.05) concentrations of non structural carbohydrates, starch, ADF, total digestible nutrients, and fermentable cell wall carbohydrates compared with the mean of the feed cultivars. The malting cultivar had a higher (P < 0.001) soluble DM fraction, lower (P < 0.05) CP and starch degradation rates, and a lower (P < 0.001) ruminally degradable starch concentration compared with the mean of the five feed cultivars. The results demonstrate that there are only small differences in terms of chemical composition and in situ degradation kinetics between the malting cultivar AC Metcalfe and the five feed cultivars of barley reported here. Key words: Barley, energy, protein, ruminants

Mapping quantitative trait loci associated with barley net blotch resistance

Net blotch of barley, caused by Pyrenophora teres Drechs., is an important foliar disease worldwide. Deployment of resistant cultivars is the most economic and eco-friendly control method. This report describes mapping of quantitative trait loci (QTL) associated with net blotch resistance in a doubled-haploid (DH) barley population using diversity arrays technology (DArT) markers. One hundred and fifty DH lines from the cross CDC Dolly (susceptible)/TR251 (resistant) were screened as seedlings in controlled environments with net-form net blotch (NFNB) isolates WRS858 and WRS1607 and spot-form net blotch (SFNB) isolate WRS857. The population was also screened at the adult-plant stage for NFNB resistance in the field in 2005 and 2006. A high-density genetic linkage map of 90 DH lines was constructed using 457 DArT and 11 SSR markers. A major NFNB seedling resistance QTL, designated QRpt6, was mapped to chromosome 6H for isolates WRS858 and WRS1607. QRpt6 was associated with adult-plant resistance in the 2005 and 2006 field trials. Additional QTL for NFNB seedling resistance to the more virulent isolate WRS858 were identified on chromosomes 2H, 4H, and 5H. A seedling resistance QTL (QRpts4) for the SFNB isolate WRS857 was detected on chromosome 4H as was a significant QTL (QRpt7) on chromosome 7H. Three QTL (QRpt6, QRpts4, QRpt7) were associated with resistance to both net blotch forms and lines with one or more of these demonstrated improved resistance. Simple sequence repeat (SSR) markers tightly linked to QRpt6 and QRpts4 were identified and validated in an unrelated barley population. The major 6H QTL, QRpt6, may provide adequate NFNB field resistance in western Canada and could be routinely selected for using molecular markers in a practical breeding program.

Identification of Molecular Markers Linked to a Pyrenophora teres Avirulence Gene

ABSTRACT Genetic control of avirulence in the net blotch pathogen, Pyrenophora teres, was investigated. To establish an appropriate study system, a collection of 10 net form (P. teres f. teres) and spot form (P. teres f. maculata) isolates were evaluated on a set of eight barley lines to identify two isolates with differential virulence on an individual host line. Two net form isolates, WRS 1906, exhibiting avirulence on the cv. Heartland, and WRS 1607, exhibiting high virulence, were mated and 67 progeny were isolated and phenotyped for reaction on Heartland. The population segregated in a 1:1 ratio, 34 avirulent to 33 virulent (chi(2) = 0.0, P = 1.0), indicating single gene control of WRS 1906 avirulence on Heartland. Bulked segregant analysis was used to identify six amplified fragment length polymorphism markers closely linked to the avirulence gene (Avr(Heartland)). This work provides evidence that the P. teres-barley pathosystem conforms to the gene-for-gene model and represents an initial step toward map-based cloning of this gene.

A molecular linkage map with associated QTLs from a hulless x covered spring oat population

In spring-type oat ( Avena sativa L.), quantitative trait loci (QTLs) detected in adapted populations may have the greatest potential for improving germplasm via marker-assisted selection. An F(6) recombinant inbred (RI) population was developed from a cross between two Canadian spring oat varieties: 'Terra', a hulless line, and 'Marion', an elite covered-seeded line. A molecular linkage map was generated using 430 AFLP, RFLP, RAPD, SCAR, and phenotypic markers scored on 101 RI lines. This map was refined by selecting a robust set of 124 framework markers that mapped to 35 linkage groups and contained 35 unlinked loci. One hundred one lines grown in up to 13 field environments in Canada and the United States between 1992 and 1997 were evaluated for 16 agronomic, kernel, and chemical composition traits. QTLs were localized using three detection methods with an experiment-wide error rate of approximately 0.05 for each trait. In total, 34 main-effect QTLs affecting the following traits were identified: heading date, plant height, lodging, visual score, grain yield, kernel weight, milling yield, test weight, thin and plump kernels, groat beta-glucan concentration, oil concentration, and protein. Several of these correspond to QTLs in homologous or homoeologous regions reported in other oat QTL studies. Twenty-four QTL-by-environment interactions and three epistatic interactions were also detected. The locus controlling the covered/hulless character ( N1) affected most of the traits measured in this study. Additive QTL models with N1 as a covariate were superior to models based on separate covered and hulless sub-populations. This approach is recommended for other populations segregating for major genes. Marker-trait associations identified in this study have considerable potential for use in marker-assisted selection strategies to improve traits within spring oat breeding programs.

Effect of phytase supplementation on phosphorus digestibility in low-phytate barley fed to finishing pigs

Forty crossbred barrows (Camborough 15 Line female x Canabred sire) weighing an average of 79.6 +/- 8.0 kg were used in a factorial design experiment (5 barleys x 2 enzyme levels) conducted to determine the effects of phytase supplementation on nutrient digestibility in low-phytate barleys fed to finishing pigs. The pigs were assigned to one of 10 dietary treatments comprised of a normal 2-rowed, hulled variety of barley (CDC Fleet, 0.26% phytate) or 2 low-phytate hulled genotypes designated as LP422 (0.14% phytate) and LP635 (0.09% phytate). A normal, hulless barley (CDC Dawn, 0.26% phytate) and a hulless genotype designated as LP422H (0.14% phytate) were also included. All barleys were fed with and without phytase (Natuphos 5000 FTU/kg). The diets fed contained 98% barley, 0.5% vitamin premix, 0.5% trace mineral premix, 0.5% NaCl and 0.5% chromic oxide but no supplemental phosphorus. The marked feed was provided for a 7-day acclimatization period, followed by a 3-day faecal collection. In the absence of phytase, phosphorus digestibility increased substantially (P < 0.05) as the level of phytate in the barley declined. For the hulled varieties, phosphorus digestibility increased from 12.9% for the normal barley (0.26% phytate) to 35.3 and 39.8% for the two low-phytate genotypes (0.14 and 0.09% phytate respectively). For the hulless varieties, phosphorus digestibility increased from 9.2% for the normal barley (0.26% phytate) to 34.7% for the hulless variety with 54% of the normal level of phytate (0.14% phytate). In contrast, when phytase was added to the diet, there was little difference in phosphorus digestibility between pigs fed normal barley and those fed the low-phytate genotypes (significant barley x enzyme interaction, P = 0.01). For the hulled varieties, phosphorus digestibility was 50.1% for the barley with the normal level of phytate (0.26% phytate) compared with 51.1 and 52.4% for the varieties with 54 and 35% of the normal level of phytate (0.14 and 0.09% phytate respectively). For the hulless varieties, phosphorus digestibility increased from 47.1% for the normal barley (0.26% phytate) to 54.4% for the hulless variety with 54% of the normal level of phytate (0.14% phytate). In conclusion, both supplementation with phytase and selection for low-phytate genotypes of barley were successful in increasing the digestibility of phosphorus for pigs. Unfortunately, the effects did not appear to be additive. Whether or not swine producers will choose low-phytate barley or supplementation with phytase as a means to improve phosphorus utilization, will likely depend on the yield potential of low-phytate barley and the additional costs associated with supplementation with phytase.

The altered pattern of amylose accumulation in the endosperm of low-amylose barley cultivars is attributable to a single mutant allele of granule-bound starch synthase I with a deletion in the 5'-non-coding region

Reasons for the variable amylose content of endosperm starch from waxy cultivars of barley (Hordeum vulgare) were investigated. The mature grains of most such cultivars contain some amylose, although amounts are much lower than in wild-type cultivars. In these low-amylose cultivars, amylose synthesis starts relatively late in grain development. Starch granules in the outer cell layers of the endosperm contain more amylose than those in the center. This distribution corresponds to that of granule-bound starch synthase I (GBSSI), which is more severely reduced in amount in the center of the endosperm than in the outer cell layers, relative to wild-type cultivars. A second GBSSI in the barley plant, GBSSIb, is not detectable in the endosperm and cannot account for amylose synthesis in the low-amylose cultivars. The change in the expression of GBSSI in the endosperm of the low-amylose cultivars appears to be due to a 413-bp deletion of part of the promoter and 5'-untranslated region of the gene. Although these cultivars are of diverse geographical origin, all carry this same deletion, suggesting that the low-amylose cultivars have a common waxy ancestor. Records suggest a probable source in China, first recorded in the 16th century. Two further families of waxy cultivars have no detectable amylose in the endosperm starch. These amylose-free cultivars were selected in the 20th century from chemically mutagenized populations of wild-type barley. In both cases, 1-bp alterations in the GBSSI gene completely eliminate GBSSI activity.

Variation in total and soluble beta-glucan content in hulless barley: effects of thermal, physical, and enzymic treatments

Total and soluble beta-glucan content and effects of various treatments of barley grain on extractability and molecular characteristics of soluble beta-glucan were studied. Four types of hulless barley (normal, high amylose, waxy, and zero amylose waxy) from 29 registered and experimental genotypes were analyzed. For each, moisture, protein, amylose, 100 kernel weight, starch, beta-glucan (total and soluble), beta-glucanase activity, and slurry viscosity were determined. Significant differences in total beta-glucan were observed among the groups, with average values of 7. 49%, 6.86%, 6.30%, and 4.38% for high amylose, waxy, zero amylose waxy, and normal barley, respectively. The extractability of beta-glucan in high amylose barley was relatively low (20.6-29.7%) compared to that in normal (29.8-44.3%), zero amylose waxy (34.0-52. 5%), and waxy (36.7-52.7%) barley genotypes. Viscosity of barley flour slurries was affected by the content of soluble beta-glucans, beta-glucanase activity, and molecular weight of beta-glucans. Hydrothermal treatments (autoclaving and steaming) of barley had no effect on extractability of beta-glucans, but prevented enzymic hydrolysis of beta-glucans, and thereby substantially improved their molecular weight. The addition of enzymes (protease and esterase) during extraction and/or physical treatments (sonication) increased extractability of beta-glucans from barley.

Identification of RAPD markers for common root rot and spot blotch (Cochliobolus sativus) resistance in barley

The identification of RAPD markers associated with genes for resistance to Cochliobolus sativus in barley would increase the efficiency of gene manipulation by reducing the number of lines that must be evaluated from a resistant by susceptible cross and by allowing selection during the off season. Two barley crosses consisting of resistant and susceptible parent genotypes ('Virden' x 'Ellice' and Fr926-77 x 'Deuce', both 2 row x 6 row crosses) and more than 140 homozygous progeny lines were rated for their reactions in field nurseries to common root rot and in a controlled environment for spot blotch. Putative RAPD markers were identified using bulked segregant analysis followed by individual progeny line analyses. Polymorphisms associated with disease reaction were detected between bulked segregant samples as differences in the band intensity of DNA fragments. The bulked segregant samples were screened against 186 RAPD primers (decamers) using the polymerase chain reaction. For the cross Fr926-77 x 'Deuce', one RAPD marker was obtained that did not segregate as expected but was associated with both diseases. For the cross 'Virden' x 'Ellice', a single RAPD marker was obtained that did not have the expected segregation ratio but was associated with spot blotch reaction. One RAPD marker linked to 2-rowed and 6-rowed spike locus was obtained in each cross, and both the marker and row type were associated with common root rot and spot blotch reactions. For the cross 'Virden' x 'Ellice', a linkage group consisting of three RAPD markers was associated with common root rot and spot blotch reaction. The genes associated with these markers condition significant levels of resistance to C. sativus and may be used to increase the speed and precision of resistance gene manipulation in barley germplasm.

Screening salt-tolerant barley genotypes via F1 anther culture in salt stress media

Anthers of two six-row barley cultivars Diamond (a germination salt sensitive cultivar) and Men Yuan Liang Lan (a germination salt tolerant cultivar), and their F1 reciprocal crosses were cultured in liquid media containing 0, 0.4, 0.6, and 0.8% Na2SO4. A total of 138 green pollen plants were obtained: 7 from Na2SO4 media, 128 from Na2SO4 free medium. Seeds of two successive generations of 61 pollen plants were germinated in a series of Na2SO4 solution (0 to 5.5%). It was found that among 37 progenies from F1 pollen in Na2SO4 free medium, 11 were as sensitive as "Diamond", 12 were intermediate to the two parents, 7 were equal to the salt tolerant parent and 7 were more tolerant to Na2SO4 than 'Men Yuan Liang Lan'. Whereas, no progeny from F1 pollen in high salt media was as susceptible as the susceptible parent; 2 were intermediate, 2 were equal to the salt tolerant parent and 2 were more tolerant than the salt tolerant parent. The results indicate that culturing anthers in Na2SO4 media effectively eliminated salt susceptible progenies. All 16 microspore-derived lines of Diamond were as susceptible as 'Diamond' to Na2SO4. The 5 lines from 'Men Yuan Liang Lan' microspores were as resistant to Na2SO4 as 'Men Yuan Liang Lan'. All of the lines breed-true. The results indicate that the lines exhibiting elevated levels of tolerance to salt probably resulted from recombination of genes rather than from spontaneous mutation.