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Santana DA, Bedrat A, Puga RD, Turecki G, Mechawar N, Faria TC, Gigek CO, Payão SL, Smith MA, Lemos B, Chen ES. The role of H3K9 acetylation and gene expression in different brain regions of Alzheimer's disease patients. Epigenomics 2022; 14:651-670. [PMID: 35588246 DOI: 10.2217/epi-2022-0096] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Aims: To evaluate H3K9 acetylation and gene expression profiles in three brain regions of Alzheimer's disease (AD) patients and elderly controls, and to identify AD region-specific abnormalities. Methods: Brain samples of auditory cortex, hippocampus and cerebellum from AD patients and controls underwent chromatin immunoprecipitation sequencing, RNA sequencing and network analyses. Results: We found a hyperacetylation of AD cerebellum and a slight hypoacetylation of AD hippocampus. The transcriptome revealed differentially expressed genes in the hippocampus and auditory cortex. Network analysis revealed Rho GTPase-mediated mechanisms. Conclusions: These findings suggest that some crucial mechanisms, such as Rho GTPase activity and cytoskeletal organization, are differentially dysregulated in brain regions of AD patients at the epigenetic and transcriptomic levels, and might contribute toward future research on AD pathogenesis.
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Affiliation(s)
- Daliléia A Santana
- Department of Morphology & Genetics, Universidade Federal de São Paulo (UNIFESP), São Paulo,SP, 04023-062, Brazil
| | - Amina Bedrat
- Department of Environmental Health & Molecular & Integrative Physiological Sciences Program, Harvard TH Chan School of Public Health, Boston, MA 02115-5810, USA
| | - Renato D Puga
- Hermes Pardini Institute, São Paulo, SP, 04038-030, Brazil
| | - Gustavo Turecki
- Department of Psychiatry, Douglas Hospital Research Center, McGill University, Montreal, QC, H4H1R3, Canada
| | - Naguib Mechawar
- Department of Psychiatry, Douglas Hospital Research Center, McGill University, Montreal, QC, H4H1R3, Canada
| | - Tathyane C Faria
- Department of Morphology & Genetics, Universidade Federal de São Paulo (UNIFESP), São Paulo,SP, 04023-062, Brazil
| | - Carolina O Gigek
- Department of Pathology, Universidade Federal de São Paulo (UNIFESP), São Paulo, SP, 04023-062, Brazil
| | - Spencer Lm Payão
- Department of Genetics, Blood Center, Faculdade de Medicina de Marília (FAMEMA), Marília, SP, 17519-050, Brazil
| | - Marília Ac Smith
- Department of Morphology & Genetics, Universidade Federal de São Paulo (UNIFESP), São Paulo,SP, 04023-062, Brazil
| | - Bernardo Lemos
- Department of Environmental Health & Molecular & Integrative Physiological Sciences Program, Harvard TH Chan School of Public Health, Boston, MA 02115-5810, USA
| | - Elizabeth S Chen
- Department of Morphology & Genetics, Universidade Federal de São Paulo (UNIFESP), São Paulo,SP, 04023-062, Brazil.,Department of Environmental Health & Molecular & Integrative Physiological Sciences Program, Harvard TH Chan School of Public Health, Boston, MA 02115-5810, USA
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Faria TC, Maldonado HL, Santos LC, DeLabio R, Payao SLM, Turecki G, Mechawar N, Santana DA, Gigek CO, Lemos B, Smith MAC, Chen ES. Characterization of Cerebellum-Specific Ribosomal DNA Epigenetic Modifications in Alzheimer's Disease: Should the Cerebellum Serve as a Control Tissue After All? Mol Neurobiol 2020; 57:2563-2571. [PMID: 32232768 DOI: 10.1007/s12035-020-01902-9] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2019] [Accepted: 03/09/2020] [Indexed: 11/26/2022]
Abstract
Alzheimer's disease (AD) is a neurodegenerative disease, known as the most common form of dementia. In AD onset, abnormal rRNA expression has been reported to be linked in pathogenesis. Although region-specific expression patterns have previously been reported in AD, it is not until recently that the cerebellum has come under the spotlight. Specifically, it is unclear whether DNA methylation is the mechanism involved in rRNA expression regulation in AD. Hence, we sought to explore the rDNA methylation pattern of two different brain regions - auditory cortex and cerebellum - from AD and age-/sex-matched controls. Our results showed differential hypermethylation at an upstream CpG region to the rDNA promoter when comparing cerebellum controls to auditory cortex controls. This suggests a possible regulatory region from rDNA expression regulation. Moreover, when comparing between AD and control cerebellum samples, we observed hypermethylation of the rDNA promoter region as well as an increase in rDNA content. In addition, we also observed increased rRNA levels in AD compared to control cerebellum. Although still considered a pathology-free brain region, there are growing findings that continue to suggest otherwise. Indeed, cerebellum from AD has been recently described as affected by the disease, presenting a unique pattern of molecular alterations. Given that we observed that increased rDNA promoter methylation did not silence rDNA gene expression, we suggest that rDNA promoter hypermethylation is playing a protective role in rDNA genomic stability and, therefore, increasing rRNA levels in AD cerebellum.
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Affiliation(s)
- Tathyane C Faria
- Departamento de Morfologia e Genética, Programa de Pós-Graduação em Biologia Estrutural e Funcional da UNIFESP/EPM, Disciplina de Genética, Universidade Federal de São Paulo (UNIFESP/EPM), São Paulo, SP, Brazil
| | - Héctor L Maldonado
- Department of Environmental Health, Program in Molecular and Integrative Physiological Sciences, Harvard T.H. Chan School of Public Health, Boston, MA, USA
| | - Leonardo C Santos
- Departamento de Morfologia e Genética, Programa de Pós-Graduação em Biologia Estrutural e Funcional da UNIFESP/EPM, Disciplina de Genética, Universidade Federal de São Paulo (UNIFESP/EPM), São Paulo, SP, Brazil
| | - Roger DeLabio
- Faculdade de Medicina de Marília (FAMEMA), Marília, SP, Brazil
| | | | - Gustavo Turecki
- Department of Psychiatry, Douglas Hospital Research Center, McGill University, Montreal, QC, Canada
| | - Naguib Mechawar
- Department of Psychiatry, Douglas Hospital Research Center, McGill University, Montreal, QC, Canada
| | - Dalileia A Santana
- Departamento de Morfologia e Genética, Programa de Pós-Graduação em Biologia Estrutural e Funcional da UNIFESP/EPM, Disciplina de Genética, Universidade Federal de São Paulo (UNIFESP/EPM), São Paulo, SP, Brazil
| | - Carolina O Gigek
- Departamento de Morfologia e Genética, Programa de Pós-Graduação em Biologia Estrutural e Funcional da UNIFESP/EPM, Disciplina de Genética, Universidade Federal de São Paulo (UNIFESP/EPM), São Paulo, SP, Brazil
| | - Bernardo Lemos
- Department of Environmental Health, Program in Molecular and Integrative Physiological Sciences, Harvard T.H. Chan School of Public Health, Boston, MA, USA
- Broad Institute of Harvard and MIT, Cambridge, MA, USA
| | - Marilia A C Smith
- Departamento de Morfologia e Genética, Programa de Pós-Graduação em Biologia Estrutural e Funcional da UNIFESP/EPM, Disciplina de Genética, Universidade Federal de São Paulo (UNIFESP/EPM), São Paulo, SP, Brazil
| | - Elizabeth S Chen
- Departamento de Morfologia e Genética, Programa de Pós-Graduação em Biologia Estrutural e Funcional da UNIFESP/EPM, Disciplina de Genética, Universidade Federal de São Paulo (UNIFESP/EPM), São Paulo, SP, Brazil.
- Department of Environmental Health, Program in Molecular and Integrative Physiological Sciences, Harvard T.H. Chan School of Public Health, Boston, MA, USA.
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Calcagno DQ, Wisnieski F, Mota ERDS, Maia de Sousa SB, Costa da Silva JM, Leal MF, Gigek CO, Santos LC, Rasmussen LT, Assumpção PP, Burbano RR, Smith MAC. Role of histone acetylation in gastric cancer: implications of dietetic compounds and clinical perspectives. Epigenomics 2019; 11:349-362. [DOI: 10.2217/epi-2018-0081] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022] Open
Abstract
Histone modifications regulate the structural status of chromatin and thereby influence the transcriptional status of genes. These processes are controlled by the recruitment of different enzymes to a specific genomic site. Furthermore, obtaining an understanding of these mechanisms could help delineate alternative treatment and preventive strategies for cancer. For example, in gastric cancer, cholecalciferol, curcumin, resveratrol, quercetin, garcinol and sodium butyrate are natural regulators of acetylation and deacetylation enzyme activity that exert chemopreventive and anticancer effects. Here, we review the recent findings on histone acetylation in gastric cancer and discuss the effects of nutrients and bioactive compounds on histone acetylation and their potential role in the prevention and treatment of this type of cancer.
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Affiliation(s)
- Danielle Q Calcagno
- Programa de Pós-graduação em Oncologia e Ciências Médicas, Núcleo de Pesquisas em Oncologia, Universidade Federal do Pará, Belém, PA, Brazil
- Programa de Pós-graduação em Química Medicinal e Modelagem Molecular, Universidade Federal do Pará, Belém, PA, Brazil
- Residência Multiprofissional em Saúde/Oncologia, Hospital Universitário João de Barros Barreto, Universidade Federal do Pará, Belém, PA, Brazil
| | | | - Elizangela R da Silva Mota
- Programa de Pós-graduação em Química Medicinal e Modelagem Molecular, Universidade Federal do Pará, Belém, PA, Brazil
| | - Stefanie B Maia de Sousa
- Programa de Pós-graduação em Oncologia e Ciências Médicas, Núcleo de Pesquisas em Oncologia, Universidade Federal do Pará, Belém, PA, Brazil
| | | | - Mariana F Leal
- Programa de Pós-graduação em Oncologia e Ciências Médicas, Núcleo de Pesquisas em Oncologia, Universidade Federal do Pará, Belém, PA, Brazil
- Disciplina de Genética, Universidade Federal de São Paulo, SP, Brazil
| | - Carolina O Gigek
- Disciplina de Genética, Universidade Federal de São Paulo, SP, Brazil
- Departamento de Patologia, Universidade Federal de São Paulo, SP, Brazil
| | - Leonardo C Santos
- Disciplina de Genética, Universidade Federal de São Paulo, SP, Brazil
| | - Lucas T Rasmussen
- Disciplina de Genética, Universidade Federal de São Paulo, SP, Brazil
- Pró-Reitoria de Pesquisa e Pós-Graduação, Universidade do Sagrado Coração, Bauru, SP, Brazil
| | - Paulo P Assumpção
- Programa de Pós-graduação em Oncologia e Ciências Médicas, Núcleo de Pesquisas em Oncologia, Universidade Federal do Pará, Belém, PA, Brazil
| | - Rommel R Burbano
- Programa de Pós-graduação em Oncologia e Ciências Médicas, Núcleo de Pesquisas em Oncologia, Universidade Federal do Pará, Belém, PA, Brazil
- Laboratório de Biologia Molecular, Hospital Ophir Loyola, Belém, PA, Brazil
| | - Marília AC Smith
- Disciplina de Genética, Universidade Federal de São Paulo, SP, Brazil
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Cruceanu C, Tan PPC, Rogic S, Lopez JP, Torres-Platas SG, Gigek CO, Alda M, Rouleau GA, Pavlidis P, Turecki G. Transcriptome sequencing of the anterior cingulate in bipolar disorder: dysregulation of G protein-coupled receptors. Am J Psychiatry 2015; 172:1131-40. [PMID: 26238605 DOI: 10.1176/appi.ajp.2015.14101279] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
OBJECTIVE Gene expression dysregulation in the brain has been associated with bipolar disorder through candidate gene and microarray expression studies, but questions remain about isoform-specific dysregulation and the role of noncoding RNAs whose importance in the brain has been suggested recently but not yet characterized for bipolar disorder. METHOD The authors used RNA sequencing, a powerful technique that captures the complexity of gene expression, in postmortem tissue from the anterior cingulate cortex from 13 bipolar disorder case subjects and 13 matched comparison subjects. Differential expression was computed, and a global pattern of downregulation was detected, with 10 transcripts significant at a false discovery rate ≤5%. Importantly, all 10 genes were also replicated in an independent RNA sequencing data set (N=61) from the anterior cingulate cortex. RESULTS Among the most significant results were genes coding for class A G protein-coupled receptors: SSTR2 (somatostatin receptor 2), CHRM2 (cholinergic receptor, muscarinic 2), and RXFP1 (relaxin/insulin-like family peptide receptor 1). A gene ontology analysis of the entire set of differentially expressed genes pointed to an overrepresentation of genes involved in G protein-coupled receptor regulation. The top genes were followed up by querying the effect of treatment with mood stabilizers commonly prescribed in bipolar disorder, which showed that these drugs modulate expression of the candidate genes. CONCLUSIONS By using RNA sequencing in the postmortem bipolar disorder brain, an interesting profile of G protein-coupled receptor dysregulation was identified, several new bipolar disorder genes were indicated, and the noncoding transcriptome in bipolar disorder was characterized. These findings have important implications with regard to fine-tuning our understanding of the bipolar disorder brain, as well as for identifying potential new drug target pathways.
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Affiliation(s)
- Cristiana Cruceanu
- From the Department of Psychiatry, McGill University, Montreal, Quebec, Canada; the McGill Group for Suicide Studies and Douglas Research Institute, Montreal, Quebec, Canada; the Montreal Neurological Institute, McGill University, Montreal, Quebec, Canada; the Centre for High-Throughput Biology and Department of Psychiatry, University of British Columbia, Vancouver, British Columbia Canada; and the Department of Psychiatry, Dalhousie University, Halifax, Nova Scotia, Canada
| | - Powell Patrick Cheng Tan
- From the Department of Psychiatry, McGill University, Montreal, Quebec, Canada; the McGill Group for Suicide Studies and Douglas Research Institute, Montreal, Quebec, Canada; the Montreal Neurological Institute, McGill University, Montreal, Quebec, Canada; the Centre for High-Throughput Biology and Department of Psychiatry, University of British Columbia, Vancouver, British Columbia Canada; and the Department of Psychiatry, Dalhousie University, Halifax, Nova Scotia, Canada
| | - Sanja Rogic
- From the Department of Psychiatry, McGill University, Montreal, Quebec, Canada; the McGill Group for Suicide Studies and Douglas Research Institute, Montreal, Quebec, Canada; the Montreal Neurological Institute, McGill University, Montreal, Quebec, Canada; the Centre for High-Throughput Biology and Department of Psychiatry, University of British Columbia, Vancouver, British Columbia Canada; and the Department of Psychiatry, Dalhousie University, Halifax, Nova Scotia, Canada
| | - Juan Pablo Lopez
- From the Department of Psychiatry, McGill University, Montreal, Quebec, Canada; the McGill Group for Suicide Studies and Douglas Research Institute, Montreal, Quebec, Canada; the Montreal Neurological Institute, McGill University, Montreal, Quebec, Canada; the Centre for High-Throughput Biology and Department of Psychiatry, University of British Columbia, Vancouver, British Columbia Canada; and the Department of Psychiatry, Dalhousie University, Halifax, Nova Scotia, Canada
| | - Susana Gabriela Torres-Platas
- From the Department of Psychiatry, McGill University, Montreal, Quebec, Canada; the McGill Group for Suicide Studies and Douglas Research Institute, Montreal, Quebec, Canada; the Montreal Neurological Institute, McGill University, Montreal, Quebec, Canada; the Centre for High-Throughput Biology and Department of Psychiatry, University of British Columbia, Vancouver, British Columbia Canada; and the Department of Psychiatry, Dalhousie University, Halifax, Nova Scotia, Canada
| | - Carolina O Gigek
- From the Department of Psychiatry, McGill University, Montreal, Quebec, Canada; the McGill Group for Suicide Studies and Douglas Research Institute, Montreal, Quebec, Canada; the Montreal Neurological Institute, McGill University, Montreal, Quebec, Canada; the Centre for High-Throughput Biology and Department of Psychiatry, University of British Columbia, Vancouver, British Columbia Canada; and the Department of Psychiatry, Dalhousie University, Halifax, Nova Scotia, Canada
| | - Martin Alda
- From the Department of Psychiatry, McGill University, Montreal, Quebec, Canada; the McGill Group for Suicide Studies and Douglas Research Institute, Montreal, Quebec, Canada; the Montreal Neurological Institute, McGill University, Montreal, Quebec, Canada; the Centre for High-Throughput Biology and Department of Psychiatry, University of British Columbia, Vancouver, British Columbia Canada; and the Department of Psychiatry, Dalhousie University, Halifax, Nova Scotia, Canada
| | - Guy A Rouleau
- From the Department of Psychiatry, McGill University, Montreal, Quebec, Canada; the McGill Group for Suicide Studies and Douglas Research Institute, Montreal, Quebec, Canada; the Montreal Neurological Institute, McGill University, Montreal, Quebec, Canada; the Centre for High-Throughput Biology and Department of Psychiatry, University of British Columbia, Vancouver, British Columbia Canada; and the Department of Psychiatry, Dalhousie University, Halifax, Nova Scotia, Canada
| | - Paul Pavlidis
- From the Department of Psychiatry, McGill University, Montreal, Quebec, Canada; the McGill Group for Suicide Studies and Douglas Research Institute, Montreal, Quebec, Canada; the Montreal Neurological Institute, McGill University, Montreal, Quebec, Canada; the Centre for High-Throughput Biology and Department of Psychiatry, University of British Columbia, Vancouver, British Columbia Canada; and the Department of Psychiatry, Dalhousie University, Halifax, Nova Scotia, Canada
| | - Gustavo Turecki
- From the Department of Psychiatry, McGill University, Montreal, Quebec, Canada; the McGill Group for Suicide Studies and Douglas Research Institute, Montreal, Quebec, Canada; the Montreal Neurological Institute, McGill University, Montreal, Quebec, Canada; the Centre for High-Throughput Biology and Department of Psychiatry, University of British Columbia, Vancouver, British Columbia Canada; and the Department of Psychiatry, Dalhousie University, Halifax, Nova Scotia, Canada
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Maussion G, Diallo AB, Gigek CO, Chen ES, Crapper L, Théroux JF, Chen GG, Vasuta C, Ernst C. Investigation of genes important in neurodevelopment disorders in adult human brain. Hum Genet 2015; 134:1037-53. [PMID: 26194112 DOI: 10.1007/s00439-015-1584-z] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2015] [Accepted: 07/07/2015] [Indexed: 12/13/2022]
Abstract
Several neurodevelopmental disorders (NDDs) are caused by mutations in genes expressed in fetal brain, but little is known about these same genes in adult human brain. Here, we test the hypothesis that genes associated with NDDs continue to have a role in adult human brain to explore the idea that NDD symptoms may be partially a result of their adult function rather than just their neurodevelopmental function. To demonstrate adult brain function, we performed expression analyses and ChIPseq in human neural stem cell(NSC) lines at different developmental stages and adult human brain, targeting two genes associated with NDDs, SATB2 and EHMT1, and the WNT signaling gene TCF7L2, which has not been associated with NDDs. Analysis of DNA interaction sites in neural stem cells reveals high (40-50 %) overlap between proliferating and differentiating cells for each gene in temporal space. Studies in adult brain demonstrate that consensus sites are similar to NSCs but occur at different genomic locations. We also performed expression analyses using BrainSpan data for NDD-associated genes SATB2, EHMT1, FMR1, MECP2, MBD5, CTNND2, RAI1, CHD8, GRIN2A, GRIN2B, TCF4, SCN2A, and DYRK1A and find high expression of these genes in adult brain, at least comparable to developing human brain, confirming that genes associated with NDDs likely have a role in adult tissue. Adult function of genes associated with NDDs might be important in clinical disease presentation and may be suitable targets for therapeutic intervention.
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Affiliation(s)
- Gilles Maussion
- Department of Psychiatry, McGill University, Montreal, QC, H4H 1R3, Canada
- McGill Group for Suicide Studies, Douglas Hospital, Montreal, QC, H4H 1R3, Canada
| | - Alpha B Diallo
- Department of Psychiatry, McGill University, Montreal, QC, H4H 1R3, Canada
- McGill Group for Suicide Studies, Douglas Hospital, Montreal, QC, H4H 1R3, Canada
| | - Carolina O Gigek
- McGill Group for Suicide Studies, Douglas Hospital, Montreal, QC, H4H 1R3, Canada
- Disciplina de Genética, Departamento de Morfologia e Genética, Escola Paulista de Medicina/Universidade Federal de São Paulo, São Paulo, SP, Brazil
| | - Elizabeth S Chen
- McGill Group for Suicide Studies, Douglas Hospital, Montreal, QC, H4H 1R3, Canada
- Disciplina de Genética, Departamento de Morfologia e Genética, Escola Paulista de Medicina/Universidade Federal de São Paulo, São Paulo, SP, Brazil
| | - Liam Crapper
- Department of Psychiatry, McGill University, Montreal, QC, H4H 1R3, Canada
- McGill Group for Suicide Studies, Douglas Hospital, Montreal, QC, H4H 1R3, Canada
| | - Jean-Francois Théroux
- Department of Psychiatry, McGill University, Montreal, QC, H4H 1R3, Canada
- McGill Group for Suicide Studies, Douglas Hospital, Montreal, QC, H4H 1R3, Canada
| | - Gary G Chen
- Department of Psychiatry, McGill University, Montreal, QC, H4H 1R3, Canada
- McGill Group for Suicide Studies, Douglas Hospital, Montreal, QC, H4H 1R3, Canada
| | - Cristina Vasuta
- Department of Psychiatry, McGill University, Montreal, QC, H4H 1R3, Canada
- McGill Group for Suicide Studies, Douglas Hospital, Montreal, QC, H4H 1R3, Canada
| | - Carl Ernst
- Department of Psychiatry, McGill University, Montreal, QC, H4H 1R3, Canada.
- McGill Group for Suicide Studies, Douglas Hospital, Montreal, QC, H4H 1R3, Canada.
- Department of Human Genetics, McGill University, Montreal, QC, H4H 1R3, Canada.
- Douglas Hospital Research Institute, 6875 LaSalle Boulevard, Frank Common Building, Room 2101.2, Verdun, QC, H4H 1R3, Canada.
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Gigek CO, Chen ES, Ota VK, Maussion G, Peng H, Vaillancourt K, Diallo AB, Lopez JP, Crapper L, Vasuta C, Chen GG, Ernst C. A molecular model for neurodevelopmental disorders. Transl Psychiatry 2015; 5:e565. [PMID: 25966365 PMCID: PMC4471287 DOI: 10.1038/tp.2015.56] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/11/2015] [Accepted: 03/24/2015] [Indexed: 01/24/2023] Open
Abstract
Genes implicated in neurodevelopmental disorders (NDDs) important in cognition and behavior may have convergent function and several cellular pathways have been implicated, including protein translational control, chromatin modification, and synapse assembly and maintenance. Here, we test the convergent effects of methyl-CpG binding domain 5 (MBD5) and special AT-rich binding protein 2 (SATB2) reduced dosage in human neural stem cells (NSCs), two genes implicated in 2q23.1 and 2q33.1 deletion syndromes, respectively, to develop a generalized model for NDDs. We used short hairpin RNA stably incorporated into healthy neural stem cells to supress MBD5 and SATB2 expression, and massively parallel RNA sequencing, DNA methylation sequencing and microRNA arrays to test the hypothesis that a primary etiology of NDDs is the disruption of the balance of NSC proliferation and differentiation. We show that reduced dosage of either gene leads to significant overlap of gene-expression patterns, microRNA patterns and DNA methylation states with control NSCs in a differentiating state, suggesting that a unifying feature of 2q23.1 and 2q33.1 deletion syndrome may be a lack of regulation between proliferation and differentiation in NSCs, as we observed previously for TCF4 and EHMT1 suppression following a similar experimental paradigm. We propose a model of NDDs whereby the balance of NSC proliferation and differentiation is affected, but where the molecules that drive this effect are largely specific to disease-causing genetic variation. NDDs are diverse, complex and unique, but the optimal balance of factors that determine when and where neural stem cells differentiate may be a major feature underlying the diverse phenotypic spectrum of NDDs.
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Affiliation(s)
- C O Gigek
- Department of Psychiatry, McGill Group for Suicide Studies, McGill University, Montreal, QC, Canada
| | - E S Chen
- Department of Psychiatry, McGill Group for Suicide Studies, McGill University, Montreal, QC, Canada
| | - V K Ota
- Department of Psychiatry, McGill Group for Suicide Studies, McGill University, Montreal, QC, Canada
| | - G Maussion
- Department of Psychiatry, McGill Group for Suicide Studies, McGill University, Montreal, QC, Canada
| | - H Peng
- Department of Psychiatry, McGill Group for Suicide Studies, McGill University, Montreal, QC, Canada
| | - K Vaillancourt
- Department of Psychiatry, McGill Group for Suicide Studies, McGill University, Montreal, QC, Canada
| | - A B Diallo
- Department of Psychiatry, McGill Group for Suicide Studies, McGill University, Montreal, QC, Canada
| | - J P Lopez
- Department of Psychiatry, McGill Group for Suicide Studies, McGill University, Montreal, QC, Canada
| | - L Crapper
- Department of Psychiatry, McGill Group for Suicide Studies, McGill University, Montreal, QC, Canada
| | - C Vasuta
- Department of Psychiatry, McGill Group for Suicide Studies, McGill University, Montreal, QC, Canada
| | - G G Chen
- Department of Psychiatry, McGill Group for Suicide Studies, McGill University, Montreal, QC, Canada
| | - C Ernst
- Department of Psychiatry, McGill Group for Suicide Studies, McGill University, Montreal, QC, Canada,Douglas Hospital Research Institute, 6875 LaSalle Boulevard, Frank Common Building Room 2101.2 Verdun, QC, Canada H4H 1R3. E-mail:
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7
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Araújo LMQ, Cendoroglo MS, Gigek CO, Chen ES, Smith MDAC. Association of lipase lipoprotein polymorphisms with high-density lipoprotein and triglycerides in elderly men. Genet Mol Res 2010; 9:86-96. [PMID: 20092038] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
Lipoprotein lipase is essential for triglyceride hydrolysis. The polymorphisms S447X in exon 9 and HindIII in intron 8 have been associated with lower triglyceride levels and lower cardiovascular risk in adult men. We examined the association of these lipoprotein lipase polymorphisms with high-density lipoprotein (HDL) and triglyceride levels in elderly men. Blood samples were obtained from 87 elderly men, 48 of whom had cardiovascular disease and 39 (controls) had no history of cardiovascular events. The lipoprotein lipase polymorphisms were analyzed by PCR-RFLP. Allele frequencies were H- = 27.9% and X = 21.5%. There were no significant differences in allele frequencies or blood lipid levels between cardiovascular disease and control groups. However, the X allele was associated with a lower triglyceride/HDL ratio, 2.30 vs 3.02 for X allele absent (P = 0.03); the H-X haplotype was associated with lower triglyceride levels compared to the H+S haplotype (1.22 vs 1.58 mM, respectively) and a lower triglyceride/HDL ratio (2.29 vs 3.26, respectively). The X allele and H-X haplotype were associated with lower triglyceride/HDL ratios in these elderly men, independent of the history of cardiovascular events.
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Affiliation(s)
- L M Q Araújo
- Disciplina de Geriatria e Gerontologia, Universidade Federal de São Paulo, São Paulo, SP, Brasil.
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8
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Smith MA, Silva PN, Gigek CO, Leal MF, Bertolucci PH, de Labio RW, Payão SL. P3-268: Promoter methylation analysis of SIRT3, SMARCA5, HTERT, CDH1 genes and ribosomal genes in aging and Alzheimer′s disease. Alzheimers Dement 2008. [DOI: 10.1016/j.jalz.2008.05.1836] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Affiliation(s)
| | | | | | - Mariana F. Leal
- Federal University of São Paulo, Brazil; Sao Paulo SP Brazil
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