Unlocking microalgal host-exploring dark-growing microalgae transformation for sustainable high-value phytochemical production

Microalgae have emerged as a promising, next-generation sustainable resource with versatile applications, particularly as expression platforms and green cell factories. They possess the ability to overcome the limitations of terrestrial plants, such non-arable land, water scarcity, time-intensive growth, and seasonal changes. However, the heterologous expression of interested genes in microalgae under heterotrophic cultivation (dark mode) remains a niche area within the field of engineering technologies. In this study, the green microalga, Chlorella sorokiniana AARL G015 was chosen as a potential candidate due to its remarkable capacity for rapid growth in complete darkness, its ability to utilize diverse carbon sources, and its potential for wastewater treatment in a circular bioeconomy model. The aims of this study were to advance microalgal genetic engineering via dark cultivation, thereby positioning the strain as promising dark-host for expressing heterologous genes to produce high-value phytochemicals and ingredients for food and feed. To facilitate comprehensive screening based on resistance, eleven common antibiotics were tested under heterotrophic condition. As the most effective selectable markers for this strain, G418, hygromycin, and streptomycin exhibited growth inhibition rates of 98%, 93%, and 92%, respectively, ensuring robust long-term transgenic growth. Successful transformation was achieved through microalgal cell cocultivation with Agrobacterium under complete darkness verified through the expression of green fluorescence protein and β-glucuronidase. In summary, this study pioneers an alternative dark-host microalgal platform, using, Chlorella, under dark mode, presenting an easy protocol for heterologous gene transformation for microalgal host, devoid of the need for expensive equipment and light for industrial production. Furthermore, the developed genetic transformation methodology presents a sustainable way for production of high-value nutrients, dietary supplements, nutraceuticals, proteins and pharmaceuticals using heterotrophic microalgae as an innovative host system.

Characterization of newly isolated thermotolerant bacterium Cupriavidus sp. CB15 from composting and its ability to produce polyhydroxyalkanoate from glycerol

BACKGROUND

This study aimed to isolate a novel thermotolerant bacterium that is capable of synthesizing polyhydroxyalkanoate from glycerol under high temperature conditions.

RESULTS

A newly thermotolerant polyhydroxyalkanoate (PHA) producing bacterium, Cupriavidus sp. strain CB15, was isolated from corncob compost. The potential ability to synthesize PHA was confirmed by detection of PHA synthase (phaC) gene in the genome. This strain could produce poly(3-hydroxybutyrate) [P(3HB)] with 0.95 g/L (PHA content 75.3 wt% of dry cell weight 1.24 g/L) using glycerol as a carbon source. The concentration of PHA was enhanced and optimized based on one-factor-at-a-time (OFAT) experiments and response surface methodology (RSM). The optimum conditions for growth and PHA biosynthesis were 10 g/L glycerol, 0.78 g/L NH₄Cl, shaking speed at 175 rpm, temperature at 45 °C, and cultivation time at 72 h. Under the optimized conditions, PHA production was enhanced to 2.09 g/L (PHA content of 74.4 wt% and dry cell weight of 2.81 g/L), which is 2.12-fold compared with non-optimized conditions. Nuclear magnetic resonance (NMR) analysis confirmed that the extracted PHA was a homopolyester of 3-hydyoxybutyrate.

CONCLUSION

Cupriavidus sp. strain CB15 exhibited potential for cost-effective production of PHA from glycerol.

Optimization of Melanin Production by Streptomyces antibioticus NRRL B-1701 Using Arthrospira (Spirulina) platensis Residues Hydrolysates as Low-Cost L-tyrosine Supplement

Melanin is a functional pigment that is used in various products. It can be produced by Streptomyces antibioticus NRRL B-1701 when supplemented with L-tyrosine. Arthrospira (Spirulina) platensis is a cyanobacterium with high protein content, including the protein phycocyanin (PC). During PC's extraction, biomass residues are generated, and these residues still contain various amino acids, especially L-tyrosine, which can be used as a low-cost supplement for melanin production. Thus, this study employed a hydrolysate of A. platensis biomass residue for L-tyrosine substitution. The effects of two drying methods, namely, lyophilization and dying via a hot air oven, on the proximate composition and content of L-tyrosine in the biomass residue were evaluated. The highest L-tyrosine (0.268 g L-tyrosine/100 g dried biomass) concentration was obtained from a hot-air-oven-dried biomass residue hydrolysate (HAO-DBRH). The HAO-DBRH was then used as a low-cost L-tyrosine supplement for maximizing melanin production, which was optimized by the response surface methodology (RSM) through central composite design (CCD). Using the RSM-CCD, the maximum level of melanin production achieved was 0.24 g/L, which is approximately four times higher than it was before optimization. This result suggests that A. platensis residue hydrolysate could be an economically feasible and low-cost alternative source of L-tyrosine for the production of melanin.

Metabolic network reconstruction of Euglena gracilis: Current state, challenges, and applications

A metabolic model, representing all biochemical reactions in a cell, is a prerequisite for several approaches in systems biology used to explore the metabolic phenotype of an organism. Despite the use of Euglena in diverse industrial applications and as a biological model, there is limited understanding of its metabolic network capacity. The unavailability of the completed genome data and the highly complex evolution of Euglena are significant obstacles to the reconstruction and analysis of its genome-scale metabolic model. In this mini-review, we discuss the current state and challenges of metabolic network reconstruction in Euglena gracilis. We have collated and present the available relevant data for the metabolic network reconstruction of E. gracilis, which could be used to improve the quality of the metabolic model of E. gracilis. Furthermore, we deliver the potential applications of the model in metabolic engineering. Altogether, it is supposed that this mini-review would facilitate the investigation of metabolic networks in Euglena and further lay out a direction for model-assisted metabolic engineering.

Adsorption of Fluoride onto Acid-Modified Low-Cost Pyrolusite Ore: Adsorption Characteristics and Efficiencies

Fluoride concentrations in the groundwater continue to be a major cause for concern in Thailand, particularly in the country's north and west. The process of removing fluoride through adsorption has captured the attention of the abundance of ore in the mining industry. For the purpose of this investigation, the utilization of the adsorbent pyrolusite, which is a manganese mineral largely composed of MnO₂, was a major component. Lab-scale experiments were conducted to investigate the efficacy of original pyrolusite ore (PA-1) and acid-modification PA (PA-2) created as low-cost adsorption materials for fluoride removal. The results of the adsorption rate in both PAs showed a fast rate of adsorption within 60 min of reaching equilibrium. According to the results of the adsorption capacity (q_e) tests, PA that had been treated with an acid solution (PA-2) had the capacity to contain more fluoride (q_e = 0.58 mg/g) than the PA that had been used initially (PA-1) (q_e = 0.11 mg/g). According to the findings of an isotherm, primary adsorption behavior is determined by the effect that surface components and chemical composition have on porous materials. This is the first current study that provides a comparison between pyrolusite from Thailand's mining industry and basic modified pyrolusite regarding their ability to remove a fluoride contaminant in synthetic groundwater by an adsorption process. Such an approach will be able to be used in the future to protect the community from excessive fluoride concentrations in household and drinking water treatment technology.

Naturally Occurring Functional Ingredient from Filamentous Thermophilic Cyanobacterium Leptolyngbya sp. KC45: Phytochemical Characterizations and Their Multiple Bioactivities

Cyanobacteria are rich in phytochemicals, which have beneficial impacts on the prevention of many diseases. This study aimed to comprehensively characterize phytochemicals and evaluate multifunctional bioactivities in the ethanolic extract of the cyanobacterium Leptolyngbya sp. KC45. Results found that the extract mainly contained chlorophylls, carotenoids, phenolics, and flavonoids. Through LC-ESI-QTOF-MS/MS analysis, 38 phenolic compounds with promising bioactivities were discovered, and a higher diversity of flavonoids was found among the phenolic compounds identified. The extract effectively absorbed the harmful UV rays and showed high antioxidant activity on DPPH, ABTS, and PFRAP. The extract yielded high-efficiency inhibitory effects on enzymes (tyrosinase, collagenase, ACE, and α-glucosidase) related to diseases. Interestingly, the extract showed a strong cytotoxic effect on cancer cells (skin A375, lung A549, and colon Caco-2), but had a much smaller effect on normal cells, indicating a satisfactory level of safety for the extract. More importantly, the combination of the DNA ladder assay and the TUNEL assay proved the appearance of DNA fragmentation in cancer cells after a 48 h treatment with the extract, confirming the apoptosis mechanisms. Our findings suggest that cyanobacterium extract could be potentially used as a functional ingredient for various industrial applications in foods, cosmetics, pharmaceuticals, and nutraceuticals.

Putative Protein Discovery from Microalgal Genomes as a Synthetic Biology Protein Library for Heavy Metal Bio-Removal

Simple Summary

Nowadays, heavy metal polluted wastewater is one of the global challenges that leads to an insufficient supply of clean water. Taking advantage of what nature has to offer, several organisms, including microalgae, can natively bioremediate these heavy metals. However, the effectiveness of such processes does not meet expectations, especially with the increasing amount of pollution in today’s world. Therefore, with the goal of creating effective strains, synthetic biology via bioengineering is widely used as a strategy to enhance the heavy metal bio-removing capability, either by directly engineering the native ability of organisms or by transferring the ability to a more suitable host. In order to do so, a list of genes or proteins involved in the processes is crucial for stepwise engineering. Yet, a large amount of information remains to be discovered. In this work, a comprehensive library of putative proteins that are involved in heavy metal bio-removal from microalgae was constructed. Moreover, with the development of machine learning, the 3D structures of these proteins are also predicted, using machine learning-based methods, to aid the use of synthetic biology further.

Abstract

Synthetic biology is a principle that aims to create new biological systems with particular functions or to redesign the existing ones through bioengineering. Therefore, this principle is often utilized as a tool to put the knowledge learned to practical use in actual fields. However, there is still a great deal of information remaining to be found, and this limits the possible utilization of synthetic biology, particularly on the topic that is the focus of the present work—heavy metal bio-removal. In this work, we aim to construct a comprehensive library of putative proteins that might support heavy metal bio-removal. Hypothetical proteins were discovered from Chlorella and Scenedesmus genomes and extensively annotated. The protein structures of these putative proteins were also modeled through Alphafold2. Although a portion of this workflow has previously been demonstrated to annotate hypothetical proteins from whole genome sequences, the adaptation of such steps is yet to be done for library construction purposes. We also demonstrated further downstream steps that allow a more accurate function prediction of the hypothetical proteins by subjecting the models generated to structure-based annotation. In conclusion, a total of 72 newly discovered putative proteins were annotated with ready-to-use predicted structures available for further investigation.

Enhanced production of microalgal biomass and lipid as an environmentally friendly biodiesel feedstock through actinomycete co-culture in biogas digestate effluent

In this study, an innovative approach to enhance the production of microalgal biomass and lipid as a promising sustainable feedstock for biodiesel was proposed using an actinomycetes co-culture with microalgae in the biogas digestate effluent (BDE) that can be employed as an environmentally friendly and cost-effective strategy. Among tested actinomycete isolates, Piscicocus intestinalis WA3 produced indole-3-acetic acid and siderophores as algal growth promoting agents and showed effective lipid accumulation with satisfying fatty acids composition. During co-cultivation of P. intestinalis WA3 with microalga Tetradesmus obliquus AARL G022 in the BDE, biomass production, chlorophyll a content, and lipid productivity were significantly increased by 1.30 folds, 1.39 folds, and 1.55 folds, respectively, compared to microalgae monoculture. The accumulated lipids contained long-chain fatty acids with better fuel properties that could potentially be used as biodiesel feedstock. The overall results evidenced that actinomycete co-culture would contribute greatly to the cost-effective production of environmental-friendly microbial-based biofuel.

Trihalomethanes in Water Supply System and Water Distribution Networks

The formation of trihalomethanes (THMs) in natural and treated water from water supply systems is an urgent research area due to the carcinogenic risk they pose. Seasonal effects and pH have captured interest as potential factors affecting THM formation in the water supply and distribution systems. We investigated THM occurrence in the water supply chain, including raw and treated water from water treatment plants (coagulation, sedimentation, sand filtration, ClO₂-disinfection processes, and distribution pipelines) in the Chiang Mai municipality, particularly the educational institute area. The effects of two seasons, rainy (September–November 2019) and dry (December 2019–February 2020), acted as surrogates for the water quality profile and THM occurrence. The results showed that humic acid was the main aromatic and organic compound in all the water samples. In the raw water sample, we found a correlation between surrogate organic compounds, including SUVA and dissolved organic carbon (DOC) (R² = 0.9878). Four species of THMs were detected, including chloroform, bromodichloromethane, dibromochloromethane, and bromoform. Chloroform was the dominant species among the THMs. The highest concentration of total THMs was 189.52 μg/L. The concentration of THMs tended to increase after chlorination when chlorine dioxide and organic compounds reacted in water. The effect of pH on the formation of TTHMs was also indicated during the study. TTHM concentrations trended lower with a pH ≤ 7 than with a pH ≥ 8 during the sampling periods. Finally, in terms of health concerns, the concentration of TTHMs was considered safe for consumption because it was below the standard (<1.0) of WHO’s Guideline Values (GVs).

Plant Growth and Drought Tolerance-Promoting Bacterium for Bioremediation of Paraquat Pesticide Residues in Agriculture Soils

Thailand is an agricultural country. However, agricultural productivity relies on the heavy use of herbicides, especially paraquat. Paraquat accumulation is emerging as a problem in an ever-growing portion of agricultural land. Paraquat residues are toxic to plants, animals, and aquatic organisms in the environment. Biological remediation is a process that can mitigate agricultural chemical contaminants. One of the interesting bioremediators is bacteria. Not only do certain soil bacteria remediate paraquat, but some of them also possess plant growth-promoting properties, which provide advantages in field application. Thus, this study aimed to screen soil bacteria that could degrade paraquat and, at the same time, promote plant growth. Bacteria were isolated from paraquat-treated agricultural soil in Mueang Kaen Pattana municipality, Chiang Mai province, Thailand. On the basis of morphological and 16S rDNA sequence analyses, the selected bacterium was identified as Bacillus aryabhattai strain MoB09. It is capable of growing in nitrogen-free media. B. aryabhattai growth and paraquat degradation were found to be optimum at pH 7 and 30°C. This selected strain also possessed plant growth-promoting abilities, including indole production, siderophore production, phosphate solubilization, and 1-aminocyclopropane-1-carboxylic acid deaminase activity. Paraquat degradation was also evaluated in pot experiments of cowpea (Vigna unguiculata). It was found that this strain could remediate the paraquat residue in both sterilized and non-sterilized soils. The cowpea plants grown in paraquat-contaminated soil with B. aryabhattai showed longer root and shoot lengths than those grown in soil without bacterial inoculation. In addition, B. aryabhattai also promoted the growth of cowpea under induced drought stress. These results suggested that B. aryabhattai could be applied to mitigate paraquat residue in soil and also to promote plant productivity for the organic crop production.

Low Crystallinity of Poly(3-Hydroxybutyrate-co-3-Hydroxyvalerate) Bioproduction by Hot Spring Cyanobacterium Cyanosarcina sp. AARL T020

The poly(3-hydroxybutyrate-co-3-hydroxyvalerate) (PHBV) derived from cyanobacteria is an environmentally friendly biodegradable polymer. The low yield of PHBV’s production is the main hindrance to its sustainable production, and the manipulation of PHBV production processes could potentially overcome this obstacle. The present research investigated evolutionarily divergent cyanobacteria obtained from local environments of Thailand. Among the strains tested, Cyanosarcina sp. AARL T020, a hot spring cyanobacterium, showed a high rate of PHBV accumulation with a fascinating 3-hydroxyvalerate mole fraction. A two-stage cultivation strategy with sole organic carbon supplementation was successful in maximizing cyanobacterial PHBV production. The use of an optimized medium in the first stage of cultivation provided a 4.9-fold increase in biomass production. Subsequently, the addition of levulinic acid in the second stage of cultivation can induce significant biomass and PHBV production. With this strategy, the final biomass production and PHBV productivity were increased by 6.5 and 73.2 fold, respectively. The GC-MS, FTIR, and NMR analyses confirmed that the obtained PHBV consisted of two subunits of 3-hydroxyvaryrate and 3-hydroxybutyrate. Interestingly, the cyanobacterial PHBV contained a very high 3-hydroxyvalerate mole fraction (94%) exhibiting a low degree of crystallinity and expanding in processability window, which could be applied to polymers for desirable advanced applications.

Advantages of Heterotrophic Microalgae as a Host for Phytochemicals Production

Currently, most commercial recombinant technologies rely on host systems. However, each host has their own benefits and drawbacks, depending on the target products. Prokaryote host is lack of post-transcriptional and post-translational mechanisms, making them unsuitable for eukaryotic productions like phytochemicals. Even there are other eukaryote hosts (e.g., transgenic animals, mammalian cell, and transgenic plants), but those hosts have some limitations, such as low yield, high cost, time consuming, virus contamination, and so on. Thus, flexible platforms and efficient methods that can produced phytochemicals are required. The use of heterotrophic microalgae as a host system is interesting because it possibly overcome those obstacles. This paper presents a comprehensive review of heterotrophic microalgal expression host including advantages of heterotrophic microalgae as a host, genetic engineering of microalgae, genetic transformation of microalgae, microalgal engineering for phytochemicals production, challenges of microalgal hosts, key market trends, and future view. Finally, this review might be a directions of the alternative microalgae host for high-value phytochemicals production in the next few years.

Paraquat Degradation by Biological Manganese Oxide (BioMnO x ) Catalyst Generated From Living Microalga Pediastrum duplex AARL G060

Paraquat is a non-selective fast-acting herbicide used to control weeds in agricultural crops. Many years of extensive use has caused environmental pollution and food toxicity. This agrochemical degrades slowly in nature, adsorbs onto clay lattices, and may require environmental remediation. Studies have shown that biosynthesized manganese oxide (BioMnOx) successfully degraded toxic synthetic compounds such as bis-phenol A and diclofenac, thus it has potential for paraquat degradation. In this experiment, P. duplex AARL G060 generated low (9.03 mg/L) and high (42.41 mg/L) concentrations of BioMnOx. The precipitated BioMnOx was observed by scanning electron microscopy (SEM), and the elemental composition was identified as Mn and O by energy-dispersive x-ray spectroscopy (EDS). The potential for BioMnOx to act as a catalyst in the degradation of paraquat was evaluated under three treatments: (1) a negative control (deionized water), (2) living alga with low BioMnOx plus hydrogen peroxide, and (3) living alga with high BioMnOx plus hydrogen peroxide. The results indicate that BioMnOx served as a catalyst in the Fenton-like reaction that could degrade more than 50% of the paraquat within 72 h. A kinetic study indicated that paraquat degradation by Fenton-like reactions using BioMnOx as a catalyst can be described by pseudo-first and pseudo-second order models. The pH level of the BioMnOx catalyst was neutral at the end of the experiment. In conclusion, BioMnOx is a viable and environmentally friendly catalyst to accelerate degradation of paraquat and other toxic chemicals.

Quantitative analysis of methane and glycolate production from microalgae using undiluted wastewater obtained from chicken-manure biogas digester

Microalgal biomass is often used as a raw material in methane production. Some microalgae possess a complex cell-wall structure which has a low degradability of microorganisms in anaerobic digestion. However, some microalgae produce glycolate, which is excreted outside the cell and can be used to produce methane under anaerobic condition. This research aims to investigate microalgal cultivation using wastewater to reduce nutrients and efficiently create glycolate. Two strains of microalgae (Acutodesmus sp. AARL G023, Chlorella sp. AARL G049) and two microalgal consortia were cultivated at dilutions of 0.5-fold (W50), 0.75-fold (W75) and undiluted wastewater (W100). The results showed that the microalgal consortium with undiluted wastewater (WCW100) consisted of Leptolyngbya sp. (30.4%), Chlorella sp. (16.1%) and Chlamydomonas sp. (52.2%), revealed the highest biomass productivity at 64.38 ± 14.54 mg·L^-1·d^-1 and the highest glycolate productivity at 5.12 ± 0.48 mmol·L^-1·d^-1. The cultivation of microalgae effectively reduced ammonium‑nitrogen (NH₄⁺-N) and soluble reactive phosphorus (SRP) levels in the wastewater at 43.5 ± 1.3% and 49.6 ± 6.9%. Furthermore, WCW100 showed the highest biogas productivity at 1.44 ± 0.07 mL·g^-1·d^-1 and the highest methane content at 58.3 ± 6.0% v/v. This study indicates that there is a definite potential of using undiluted wastewater for microalgal biomass production and glycolate production that can reduce the wastewater volume and be applied as a raw material for methane production.

A simple way to improve a conventional A/O-MBR for high simultaneous carbon and nutrient removal from synthetic municipal wastewater

In this study, two anoxic-oxic membrane bioreactor (A/O-MBR) systems, i.e. conventional and biofilm anoxic-oxic-membrane bioreactors (C-A/O-MBR and BF-A/O-MBR, respectively), were operated in parallel under conditions of complete sludge retention for the purposes of comparing system performance and microbial community composition. Moreover, with the microbial communities, comparisons were made between the adhesive stage and the suspended stage. High average removal of COD, NH4+-N and TN was achieved in both systems. However, TP removal efficiency was remarkably higher in BF-A/O-MBR when compared with C-A/O-MBR. TP mass balance analysis suggested that under complete sludge retention, polyurethane sponges that were added into the anoxic tank played a key role in both phosphorus release and accumulation. The qPCR analysis showed that sponge biomass could maintain a higher level of abundance of total bacteria than the suspended sludge. Meanwhile, AOB and denitrifiers were enriched in the suspended sludge but not in the sponge biomass. Results of illumina sequencing reveal that the compacted sponge in BF-A/O-MBR could promote the growth of bacteria involved in nutrient removal and reduce the amount of filamentous and bacterial growth that is related to membrane fouling in the suspended sludge.

Remediation of Manganese-Contaminated Coal-Mine Water Using Bio-Sorption and Bio-Oxidation by the Microalga Pediastrum duplex (AARLG060): A Laboratory-Scale Feasibility Study

Acidification occurs as a result of acid mine drainage after the oxidative weathering of metal sulfides. The acidic condition corrodes other toxic elements from the soil and becomes distributed around the operating site. Although coal mines go through a process of rehabilitation, water samples in the rehabilitated reservoir still reveal high concentrations of certain metals, for example, manganese (Mn). Both living and non-living biomass substances were used in Mn remediation. However, using non-living biomass as a sorbent may be inappropriate for the purposes of upscaling in high-volume water bodies. Thus, living microalga, Pediastrum duplex AARLG060, has become of significant interest for this type of application. The Mn remediation of microalga was performed by biosorption and bio-oxidation. The aim of this study was to evaluate the potential of microalgal Mn remediation of the water obtained from a rehabilitated coal-mine reservoir. The equilibrium and isotherm values of the remediation process were also studied. The microalga was used to remediate Mn in water under three different water conditions, including filtrated water obtained from the rehabilitated site, non-filtrated water that was sterilized with an autoclave, and non-treated water. Remediation was performed by culturing microalga with modified medium consisting of N, P, C, and Mg nutrients. The remediated Mn concentration present in the cultures was detected by atomic absorption spectroscopy. The precipitated Mn was collected as a result of bio-oxidation, and EDTA was used to wash Mn from the biomass. This was designated as an adsorption result. Characterization of biosorption was evaluated by employing the Langmuir and Freundlich models. The results demonstrated that all treatments of living microalga could support Mn bio-oxidation. The Mn remediation was successfully performed at over 97% in every treatment. The adsorption characteristics revealed a close similarity to the Langmuir isotherm of monolayer adsorption. The scanning electron microscope-energy dispersive spectroscopy (SEM-EDS) indicated precipitation of Mn oxide on the cell surface, while transmission electron microscopy (TEM) revealed that the nanoparticles of Mn were scattered mainly in the chloroplast and throughout the vacuoles of the cells.

Effects of Copper and pH on the Growth and Physiology of Desmodesmus sp. AARLG074

Copper (Cu) is a heavy metal that is widely used in industry and as such wastewater from mining or industrial operations can contain high levels of Cu. Some aquatic algal species can tolerate and bioaccumulate Cu and so could play a key role in bioremediating and recovering Cu from polluted waterways. One such species is the green alga Desmodesmus sp. AARLG074. The aim of this study was to determine how Desmodesmus is able to tolerate large alterations in its external Cu and pH environment. Specifically, we set out to measure the variations in the Cu removal efficiency, growth, ultrastructure, and cellular metabolite content in the algal cells that are associated with Cu exposure and acidity. The results showed that Desmodesmus could remove up to 80% of the copper presented in Jaworski’s medium after 30 min exposure. There was a decrease in the ability of Cu removal at pH 4 compared to pH 6 indicating both pH and Cu concentration affected the efficiency of Cu removal. Furthermore, Cu had an adverse effect on algal growth and caused ultrastructural changes. Metabolite fingerprinting (FT-IR and GC-MS) revealed that the polysaccharide and amino acid content were the main metabolites affected under acid and Cu exposure. Fructose, lactose and sorbose contents significantly decreased under both acidic and Cu conditions, whilst glycerol and melezitose contents significantly increased at pH 4. The pathway analysis showed that pH had the highest impact score on alanine, aspartate and glutamate metabolism whereas Cu had the highest impact on arginine and proline metabolism. Notably both Cu and pH had impact on glutathione and galactose metabolism.