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Nanou A, Toumpeki C, Fanis P, Bianchi N, Cosenza LC, Zuccato C, Sentis G, Giagkas G, Stephanou C, Phylactides M, Christou S, Hadjigavriel M, Sitarou M, Lederer CW, Gambari R, Kleanthous M, Katsantoni E. Sex-specific transcriptional profiles identified in β-thalassemia patients. Haematologica 2021; 106:1207-1211. [PMID: 32817281 PMCID: PMC8018115 DOI: 10.3324/haematol.2020.248013] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2020] [Indexed: 11/29/2022] Open
Affiliation(s)
- Aikaterini Nanou
- Basic Research Center, Biomedical Research Foundation, Academy of Athens, Athens, Greece
| | - Chrisavgi Toumpeki
- Basic Research Center, Biomedical Research Foundation, Academy of Athens, Athens, Greece
| | - Pavlos Fanis
- Molecular Genetics Thalassaemia Department, The Cyprus Institute of Neurology and Genetics, Nicosia
| | - Nicoletta Bianchi
- Department of Life Sciences and Biotechnology, Ferrara University, Ferrara, Italy
| | | | - Cristina Zuccato
- Department of Life Sciences and Biotechnology, Ferrara University, Ferrara, Italy
| | - George Sentis
- Basic Research Center, Biomedical Research Foundation, Academy of Athens, Athens, Greece
| | - Giorgos Giagkas
- Basic Research Center, Biomedical Research Foundation, Academy of Athens, Athens, Greece
| | - Coralea Stephanou
- Molecular Genetics Thalassaemia Department, The Cyprus Institute of Neurology and Genetics, Nicosia
| | - Marios Phylactides
- Molecular Genetics Thalassaemia Department, The Cyprus Institute of Neurology and Genetics, Nicosia
| | | | | | - Maria Sitarou
- Thalassemia Clinic Larnaca, Larnaca General Hospital, Larnaca, Cyprus
| | - Carsten W Lederer
- Molecular Genetics Thalassaemia Department, The Cyprus Institute of Neurology and Genetics, Nicosia
| | - Roberto Gambari
- Department of Life Sciences and Biotechnology, Ferrara University, Ferrara, Italy
| | - Marina Kleanthous
- Molecular Genetics Thalassaemia Department, The Cyprus Institute of Neurology and Genetics, Nicosia
| | - Eleni Katsantoni
- Basic Research Center, Biomedical Research Foundation, Academy of Athens, Athens, Greece
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Toumpeki C, Liberis A, Tsirkas I, Tsirka T, Kalagasidou S, Inagamova L, Anthoulaki X, Tsatsaris G, Kontomanolis EN. The Role of ARID1A in Endometrial Cancer and the Molecular Pathways Associated With Pathogenesis and Cancer Progression. In Vivo 2019; 33:659-667. [PMID: 31028182 PMCID: PMC6559907 DOI: 10.21873/invivo.11524] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2019] [Revised: 03/26/2019] [Accepted: 04/01/2019] [Indexed: 02/07/2023]
Abstract
AT-rich interaction domain 1A gene (ARID1A) encodes for a subunit of the switch/sucrose non-fermentable (SWI/SNF) complex, a chromatin remodeling complex, and it has been implicated in the pathogenesis of various cancer types. In this review, we discuss how ARID1A is linked to endometrial cancer and what molecular pathways are affected by mutation or inhibition of ARID1A. We also discuss the potential use of ARID1A not only as a prognostic biomarker, but also as a target for therapeutic interventions.
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Affiliation(s)
- Chrisavgi Toumpeki
- Department of Obstetrics and Gynecology, Democritus University of Thrace, Alexandroupolis, Greece
| | - Anastasios Liberis
- Second Department of Obstetrics and Gynecology, Hippokration General Hospital, Thessaloniki, Greece
| | - Ioannis Tsirkas
- Department of Obstetrics and Gynecology, Democritus University of Thrace, Alexandroupolis, Greece
| | - Theodora Tsirka
- Department of Molecular Biology and Genetics, University of Thrace, Alexandroupolis, Greece
| | - Sofia Kalagasidou
- Department of Obstetrics and Gynecology, Bodosakio General Hospital of Ptolemaida, Ptolemaida, Greece
| | - Lola Inagamova
- Department of Obstetrics and Gynecology, Democritus University of Thrace, Alexandroupolis, Greece
| | - Xanthoula Anthoulaki
- Department of Obstetrics and Gynecology, Democritus University of Thrace, Alexandroupolis, Greece
| | - Georgios Tsatsaris
- Department of Obstetrics and Gynecology, Democritus University of Thrace, Alexandroupolis, Greece
| | - Emmanuel N Kontomanolis
- Department of Obstetrics and Gynecology, Democritus University of Thrace, Alexandroupolis, Greece
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3
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Troianou V, Toumpeki C, Dorignac E, Kogkou C, Kallithraka S, Kotseridis Y. Evaluation of Saccharomyces pastorianus impact to Sauvignon blanc chemical & sensory profile compared to different strains of S. cerevisiae/bayanus. BIO Web Conf 2019. [DOI: 10.1051/bioconf/20191202025] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Enhancing flavors and/or improving fermentation parameters through the use of different species of yeast strains is nowadays a frequent challenge in winemaking research, especially for aromatic varieties such as Sauvignon Blanc. In this work, the aim was to focus on the impact of a species not already studied in wine: Saccharomyces pastorianus. Twenty-two fermentations were conducted on a Sauvignon Blanc must by addition of different strains and mixtures of them by using two different inoculation temperatures. The must was inoculated in cold condition with two similar mixtures of S. pastorianus 1 or 2 (70%) and S. bayanus(30%), with S. pastorianus 1 or 2 alone, with the correspondent S. bayanusalone and with two other S. cerevisiae1 and 2 alone as well. For classic condition, the must was inoculated with only one mixture S. pastorianus1 (70%) / S. bayanus(30%), and respectively with S. pastorianus1, S. bayanus and S. cerevisiae 2 alone. Samples were taken all along the fermentations for both conditions in order to check chemical and microbial analyses as well as yeast implantations. The final wines were analysed for alcohol, glucose, fructose, all other classical wine analysis as well as for acetate esters, and higher alcohols. The results underlined that for both S. pastorianus 1 and S. pastorianus 2 strains, the production of acetic acid was zero in cold condition and really low (0.09 g/l) for classic condition regarding S. pastorianus 1. As a consequence, Saccharomyces pastorianus seems to be highly interesting for winemaking, alone or in co-inoculation with S. bayanus.
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Toumpeki C, Anastasakis D, Panagoulias I, Stamatopoulou V, Georgakopoulos T, Kallia-Raftopoulos S, Mouzaki A, Drainas D. Construction of an M1GS Ribozyme for Targeted and Rapid mRNA Cleavage; Application on the Ets-2 Oncogene. Med Chem 2018; 14:604-616. [DOI: 10.2174/1573406414666180112115201] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2017] [Revised: 01/02/2018] [Accepted: 01/08/2018] [Indexed: 11/22/2022]
Affiliation(s)
- Chrisavgi Toumpeki
- Department of Biological Chemistry, School of Medicine, University of Patras, Patras, 26500, Greece
| | - Dimitrios Anastasakis
- Department of Biological Chemistry, School of Medicine, University of Patras, Patras, 26500, Greece
| | - Ioannis Panagoulias
- Division of Hematology, Department of Internal Medicine, School of Medicine, University of Patras, Patras, 26500, Greece
| | - Vassiliki Stamatopoulou
- Department of Biological Chemistry, School of Medicine, University of Patras, Patras, 26500, Greece
| | - Tassos Georgakopoulos
- Division of Hematology, Department of Internal Medicine, School of Medicine, University of Patras, Patras, 26500, Greece
| | - Sofia Kallia-Raftopoulos
- Department of Biological Chemistry, School of Medicine, University of Patras, Patras, 26500, Greece
| | - Athanasia Mouzaki
- Division of Hematology, Department of Internal Medicine, School of Medicine, University of Patras, Patras, 26500, Greece
| | - Denis Drainas
- Department of Biological Chemistry, School of Medicine, University of Patras, Patras, 26500, Greece
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Nanou A, Toumpeki C, Lavigne MD, Lazou V, Demmers J, Paparountas T, Thanos D, Katsantoni E. The dual role of LSD1 and HDAC3 in STAT5-dependent transcription is determined by protein interactions, binding affinities, motifs and genomic positions. Nucleic Acids Res 2016; 45:142-154. [PMID: 27651463 PMCID: PMC5224505 DOI: 10.1093/nar/gkw832] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2016] [Revised: 09/08/2016] [Accepted: 09/11/2016] [Indexed: 12/31/2022] Open
Abstract
STAT5 interacts with other factors to control transcription, and the mechanism of regulation is of interest as constitutive active STAT5 has been reported in malignancies. Here, LSD1 and HDAC3 were identified as novel STAT5a interacting partners in pro-B cells. Characterization of STAT5a, LSD1 and HDAC3 target genes by ChIP-seq and RNA-seq revealed gene subsets regulated by independent or combined action of the factors and LSD1/HDAC3 to play dual role in their activation or repression. Genes bound by STAT5a alone or in combination with weakly associated LSD1 or HDAC3 were enriched for the canonical STAT5a GAS motif, and such binding induced activation or repression. Strong STAT5 binding was seen more frequently in intergenic regions, which might function as distal enhancer elements. Groups of genes bound weaker by STAT5a and stronger by LSD1/HDAC3 showed an absence of the GAS motif, and were differentially regulated based on their genomic binding localization and binding affinities. These genes exhibited increased binding frequency in promoters, and in conjunction with the absence of GAS sites, the data indicate a requirement for stabilization by additional factors, which might recruit LSD1/HDAC3. Our study describes an interaction network of STAT5a/LSD1/HDAC3 and a dual function of LSD1/HDAC3 on STAT5-dependent transcription, defined by protein–protein interactions, genomic binding localization/affinity and motifs.
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Affiliation(s)
- Aikaterini Nanou
- Basic Research Center, Biomedical Research Foundation, Academy of Athens, Soranou tou Ephessiou 4, 115 27 Athens, Greece
| | - Chrisavgi Toumpeki
- Basic Research Center, Biomedical Research Foundation, Academy of Athens, Soranou tou Ephessiou 4, 115 27 Athens, Greece
| | - Matthieu D Lavigne
- Basic Research Center, Biomedical Research Foundation, Academy of Athens, Soranou tou Ephessiou 4, 115 27 Athens, Greece
| | - Vassiliki Lazou
- Basic Research Center, Biomedical Research Foundation, Academy of Athens, Soranou tou Ephessiou 4, 115 27 Athens, Greece
| | - Jeroen Demmers
- Proteomics Center, Erasmus Medical Center, Wytemaweg 80, 3015 CN Rotterdam, The Netherlands
| | - Triantafillos Paparountas
- Basic Research Center, Biomedical Research Foundation, Academy of Athens, Soranou tou Ephessiou 4, 115 27 Athens, Greece
| | - Dimitris Thanos
- Basic Research Center, Biomedical Research Foundation, Academy of Athens, Soranou tou Ephessiou 4, 115 27 Athens, Greece
| | - Eleni Katsantoni
- Basic Research Center, Biomedical Research Foundation, Academy of Athens, Soranou tou Ephessiou 4, 115 27 Athens, Greece
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Stamatopoulou V, Toumpeki C, Vourekas A, Bikou M, Tsitlaidou M, Tzakos AG, Afendra A, Drainas C, Drainas D. On the Role of the Appended P19 Element in Type A RNAs of Bacterial RNase P. Biochemistry 2014; 53:1810-7. [DOI: 10.1021/bi4011013] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Affiliation(s)
| | - Chrisavgi Toumpeki
- Department
of Biochemistry, School of Medicine, University of Patras, Patras, Greece
| | - Anastassios Vourekas
- Department
of Biochemistry, School of Medicine, University of Patras, Patras, Greece
| | - Maria Bikou
- Department
of Biochemistry, School of Medicine, University of Patras, Patras, Greece
| | - Marianthi Tsitlaidou
- Department
of Biochemistry, School of Medicine, University of Patras, Patras, Greece
| | - Andreas G. Tzakos
- Department
of Chemistry, Sector of Organic Chemistry and Biochemistry, University of Ioannina, Ipiros, Greece
| | - Amalia Afendra
- Department
of Biological Applications and Technologies, University of Ioannina, Ipiros, Greece
| | - Constantin Drainas
- Department
of Chemistry, Sector of Organic Chemistry and Biochemistry, University of Ioannina, Ipiros, Greece
| | - Denis Drainas
- Department
of Biochemistry, School of Medicine, University of Patras, Patras, Greece
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Toumpeki C, Stamatopoulou V, Bikou M, Grafanaki K, Kallia-Raftopoulou S, Papaioannou D, Stathopoulos C, Drainas D. Targeting Ribonuclease P. Antibiotics (Basel) 2013. [DOI: 10.1002/9783527659685.ch14] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022] Open
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Stamatopoulou V, Toumpeki C, Tzakos A, Vourekas A, Drainas D. Domain Architecture of the DRpp29 Protein and Its Interaction with the RNA Subunit of Dictyostelium discoideum RNase P. Biochemistry 2010; 49:10714-27. [DOI: 10.1021/bi101297z] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
| | - Chrisavgi Toumpeki
- Department of Biochemistry, School of Medicine, University of Patras, 26500 Patras, Greece
| | - Andreas Tzakos
- Department of Chemistry, Section of Organic Chemistry and Biochemistry, University of Ioannina, 45110 Ioannina, Greece
| | - Anastassios Vourekas
- Department of Biochemistry, School of Medicine, University of Patras, 26500 Patras, Greece
| | - Denis Drainas
- Department of Biochemistry, School of Medicine, University of Patras, 26500 Patras, Greece
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Faropoulos K, Chroni E, Assimakopoulos SF, Mavrakis A, Stamatopoulou V, Toumpeki C, Drainas D, Grintzalis K, Papapostolou I, Georgiou CD, Konstantinou D. Altered occludin expression in brain capillaries induced by obstructive jaundice in rats. Brain Res 2010; 1325:121-7. [PMID: 20170644 DOI: 10.1016/j.brainres.2010.02.020] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2009] [Revised: 01/30/2010] [Accepted: 02/04/2010] [Indexed: 11/18/2022]
Abstract
The development of increased oxidative stress in the context of obstructive cholestasis has been proven in various rats' organs including the brain. The present study aimed to detect alterations of tight junction-associated occludin in rat brain capillaries after bile duct ligation (BDL). In experiment 1, occludin expression was evaluated by Western blot analysis in 5 animals 10 days after BDL and compared with 5 sham-operated ones. In experiment 2, groups of 9 animals each were used to assess occludin levels on the 1st, 5th, and 10th days after BDL and to associate these measurements with the in vivo superoxide radical production measured by means of an ultrasensitive fluorescent assay. The results indicated that occludin expression in BDL animals, as opposed to sham-operated, was significantly reduced at every time point studied, being lowest in the rats remaining on BDL condition for 10 days. Moreover, it was demonstrated that the time-dependent downregulation of occludin expression in the brain endothelial was significantly correlated with the time-dependent increase of brain superoxide radical level, implying a relationship between these two abnormalities. In conclusion, the evidence presented herein suggests the implication of occludin and, therefore, of blood-brain barrier in the pathophysiology of extrahepatic cholestasis.
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Affiliation(s)
- Konstantinos Faropoulos
- Department of Neurosurgery, School of Medicine, Division of Genetics, Cell and Developmental Biology, University of Patras, Patras, Greece
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Vourekas A, Vryzaki E, Toumpeki C, Stamatopoulou V, Monastirli A, Tsambaos D, Drainas D. Partial purification and characterization of RNase P from human peripheral lymphocytes. Exp Dermatol 2009; 18:130-3. [DOI: 10.1111/j.1600-0625.2008.00772.x] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Abstract
RNA molecules play critical roles in cell biology, and novel findings continuously broaden their functional repertoires. Apart from their well-documented participation in protein synthesis, it is now apparent that several noncoding RNAs (i.e., micro-RNAs and riboswitches) also participate in the regulation of gene expression. The discovery of catalytic RNAs had profound implications on our views concerning the evolution of life on our planet at a molecular level. A characteristic attribute of RNA, probably traced back to its ancestral origin, is the ability to interact with and be modulated by several ions and molecules of different sizes. The inhibition of ribosome activity by antibiotics has been extensively used as a therapeutical approach, while activation and substrate-specificity alteration have the potential to enhance the versatility of ribozyme-based tools in translational research. In this review, we will describe some representative examples of such modulators to illustrate the potential of catalytic RNAs as tools and targets in research and clinical approaches.
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Affiliation(s)
- Anastassios Vourekas
- Department of Biological Chemistry, School of Medicine, University of Patras, Rio-Patras, Greece
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Abstract
The effect of macrolide antibiotic spiramycin on RNase P holoenzyme and M1 RNA from Escherichia coli was investigated. Ribonuclease P (RNase P) is a ribozyme that is responsible for the maturation of 5' termini of tRNA molecules. Spiramycin revealed a dose-dependent activation on pre-tRNA cleavage by E. coli RNase P holoenzyme and M1 RNA. The K s and V max, as well as the K s(app) and V max(app) values of RNase P holoenzyme and M1 RNA in the presence or absence of spiramycin, were calculated from primary and secondary kinetic plots. It was found that the activity status of RNase P holoenzyme and M1 RNA is improved by the presence of spiramycin 18- and 12-fold, respectively. Primer extension analysis revealed that spiramycin induces a conformational change of the P10/11 structural element of M1 RNA, which is involved in substrate recognition.
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Affiliation(s)
- Chrisavgi Toumpeki
- Department of Biochemistry, School of Medicine, University of Patras, 26500 Patras, Greece
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Kalavrizioti D, Vourekas A, Stamatopoulou V, Toumpeki C, Giannouli S, Stathopoulos C, Drainas D. RNA-Mediated Therapeutics: From Gene Inactivation to Clinical Application. Curr Top Med Chem 2006; 6:1737-58. [PMID: 17017954 DOI: 10.2174/156802606778194253] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
The specific targeting and inactivation of gene expression represents nowadays the goal of the mainstream basic and applied biomedical research. Both researchers and pharmaceutical companies, taking advantage of the vast amount of genomic data, have been focusing on effective endogenous mechanisms of the cell that can be used against abnormal gene expression. In this context, RNA represents a key molecule that serves both as tool and target for deploying molecular strategies based on the suppression of genes of interest. The main RNA-mediated therapeutic methodologies, deriving from studies on catalytic activity of ribozymes, blockage of mRNA translation and the recently identified RNA interference, will be discussed in an effort to understand the utilities of RNA as a central molecule during gene expression.
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