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Yu L, Khachaturyan M, Matschiner M, Healey A, Bauer D, Cameron B, Cusson M, Emmett Duffy J, Joel Fodrie F, Gill D, Grimwood J, Hori M, Hovel K, Hughes AR, Jahnke M, Jenkins J, Keymanesh K, Kruschel C, Mamidi S, Menning DM, Moksnes PO, Nakaoka M, Pennacchio C, Reiss K, Rossi F, Ruesink JL, Schultz ST, Talbot S, Unsworth R, Ward DH, Dagan T, Schmutz J, Eisen JA, Stachowicz JJ, Van de Peer Y, Olsen JL, Reusch TBH. Author Correction: Ocean current patterns drive the worldwide colonization of eelgrass (Zostera marina). Nat Plants 2023; 9:1370. [PMID: 37550373 PMCID: PMC10435385 DOI: 10.1038/s41477-023-01504-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/09/2023]
Affiliation(s)
- Lei Yu
- Marine Evolutionary Ecology, GEOMAR Helmholtz Centre for Ocean Research Kiel, Kiel, Germany
| | - Marina Khachaturyan
- Marine Evolutionary Ecology, GEOMAR Helmholtz Centre for Ocean Research Kiel, Kiel, Germany
- Institute of General Microbiology, Kiel University, Kiel, Germany
| | - Michael Matschiner
- Department of Paleontology and Museum, University of Zurich, Zurich, Switzerland
- Natural History Museum, University of Oslo, Oslo, Norway
| | - Adam Healey
- Genome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA
| | - Diane Bauer
- US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
| | - Brenda Cameron
- Department of Evolution and Ecology, University of California, Davis, CA, USA
| | - Mathieu Cusson
- Département des sciences fondamentales, Université du Québec à Chicoutimi, Chicoutimi, Quebec, Canada
| | - J Emmett Duffy
- Tennenbaum Marine Observatories Network, Smithsonian Environmental Research Center, Edgewater, MD, USA
| | - F Joel Fodrie
- Institute of Marine Sciences (UNC-CH), Morehead City, NC, USA
| | - Diana Gill
- Marine Evolutionary Ecology, GEOMAR Helmholtz Centre for Ocean Research Kiel, Kiel, Germany
| | - Jane Grimwood
- Genome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA
| | - Masakazu Hori
- Japan Fisheries Research and Education Agency, Yokohama, Japan
| | - Kevin Hovel
- Department of Biology, San Diego State University, San Diego, CA, USA
| | | | - Marlene Jahnke
- Tjärnö Marine Laboratory, Department of Marine Sciences, University of Gothenburg, Strömstad, Sweden
| | - Jerry Jenkins
- Genome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA
| | - Keykhosrow Keymanesh
- US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
| | | | - Sujan Mamidi
- Genome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA
| | | | - Per-Olav Moksnes
- Department of Marine Sciences, University of Gothenburg, Gothenburg, Sweden
| | | | - Christa Pennacchio
- US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
| | | | - Francesca Rossi
- Department of Integrative Marine Ecology (EMI), Stazione Zoologica Anton Dohrn-National Institute of Marine Biology, Ecology and Biotechnology, Genoa, Italy
| | | | | | - Sandra Talbot
- Far Northwestern Institute of Art and Science, Anchorage, AK, USA
| | - Richard Unsworth
- Department of Biosciences, Swansea University, Swansea, UK
- Project Seagrass, the Yard, Bridgend, UK
| | - David H Ward
- US Geological Survey, Alaska Science Center, Anchorage, AK, USA
| | - Tal Dagan
- Institute of General Microbiology, Kiel University, Kiel, Germany
| | - Jeremy Schmutz
- Genome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA
- US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
| | - Jonathan A Eisen
- Department of Evolution and Ecology, University of California, Davis, CA, USA
| | - John J Stachowicz
- Department of Evolution and Ecology, University of California, Davis, CA, USA
- Center for Population Biology, University of California, Davis, CA, USA
| | - Yves Van de Peer
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Gent, Belgium
- Center for Microbial Ecology and Genomics, Department of Biochemistry, Genetics and Microbiology, University of Pretoria, Pretoria, South Africa
- College of Horticulture, Academy for Advanced Interdisciplinary Studies, Nanjing Agricultural University, Nanjing, China
- VIB-UGent Center for Plant Systems Biology, Gent, Belgium
| | - Jeanine L Olsen
- Groningen Institute for Evolutionary Life Sciences, Groningen, The Netherlands
| | - Thorsten B H Reusch
- Marine Evolutionary Ecology, GEOMAR Helmholtz Centre for Ocean Research Kiel, Kiel, Germany.
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Yu L, Khachaturyan M, Matschiner M, Healey A, Bauer D, Cameron B, Cusson M, Emmett Duffy J, Joel Fodrie F, Gill D, Grimwood J, Hori M, Hovel K, Hughes AR, Jahnke M, Jenkins J, Keymanesh K, Kruschel C, Mamidi S, Menning DM, Moksnes PO, Nakaoka M, Pennacchio C, Reiss K, Rossi F, Ruesink JL, Schultz ST, Talbot S, Unsworth R, Ward DH, Dagan T, Schmutz J, Eisen JA, Stachowicz JJ, Van de Peer Y, Olsen JL, Reusch TBH. Ocean current patterns drive the worldwide colonization of eelgrass (Zostera marina). Nat Plants 2023; 9:1207-1220. [PMID: 37474781 PMCID: PMC10435387 DOI: 10.1038/s41477-023-01464-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/30/2022] [Accepted: 06/21/2023] [Indexed: 07/22/2023]
Abstract
Currents are unique drivers of oceanic phylogeography and thus determine the distribution of marine coastal species, along with past glaciations and sea-level changes. Here we reconstruct the worldwide colonization history of eelgrass (Zostera marina L.), the most widely distributed marine flowering plant or seagrass from its origin in the Northwest Pacific, based on nuclear and chloroplast genomes. We identified two divergent Pacific clades with evidence for admixture along the East Pacific coast. Two west-to-east (trans-Pacific) colonization events support the key role of the North Pacific Current. Time-calibrated nuclear and chloroplast phylogenies yielded concordant estimates of the arrival of Z. marina in the Atlantic through the Canadian Arctic, suggesting that eelgrass-based ecosystems, hotspots of biodiversity and carbon sequestration, have only been present there for ~243 ky (thousand years). Mediterranean populations were founded ~44 kya, while extant distributions along western and eastern Atlantic shores were founded at the end of the Last Glacial Maximum (~19 kya), with at least one major refuge being the North Carolina region. The recent colonization and five- to sevenfold lower genomic diversity of the Atlantic compared to the Pacific populations raises concern and opportunity about how Atlantic eelgrass might respond to rapidly warming coastal oceans.
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Affiliation(s)
- Lei Yu
- Marine Evolutionary Ecology, GEOMAR Helmholtz Centre for Ocean Research Kiel, Kiel, Germany
| | - Marina Khachaturyan
- Marine Evolutionary Ecology, GEOMAR Helmholtz Centre for Ocean Research Kiel, Kiel, Germany
- Institute of General Microbiology, Kiel University, Kiel, Germany
| | - Michael Matschiner
- Department of Paleontology and Museum, University of Zurich, Zurich, Switzerland
- Natural History Museum, University of Oslo, Oslo, Norway
| | - Adam Healey
- Genome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA
| | - Diane Bauer
- US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
| | - Brenda Cameron
- Department of Evolution and Ecology, University of California, Davis, CA, USA
| | - Mathieu Cusson
- Département des sciences fondamentales, Université du Québec à Chicoutimi, Chicoutimi, Quebec, Canada
| | - J Emmett Duffy
- Tennenbaum Marine Observatories Network, Smithsonian Environmental Research Center, Edgewater, MD, USA
| | - F Joel Fodrie
- Institute of Marine Sciences (UNC-CH), Morehead City, NC, USA
| | - Diana Gill
- Marine Evolutionary Ecology, GEOMAR Helmholtz Centre for Ocean Research Kiel, Kiel, Germany
| | - Jane Grimwood
- Genome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA
| | - Masakazu Hori
- Japan Fisheries Research and Education Agency, Yokohama, Japan
| | - Kevin Hovel
- Department of Biology, San Diego State University, San Diego, CA, USA
| | | | - Marlene Jahnke
- Tjärnö Marine Laboratory, Department of Marine Sciences, University of Gothenburg, Strömstad, Sweden
| | - Jerry Jenkins
- Genome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA
| | - Keykhosrow Keymanesh
- US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
| | | | - Sujan Mamidi
- Genome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA
| | | | - Per-Olav Moksnes
- Department of Marine Sciences, University of Gothenburg, Gothenburg, Sweden
| | | | - Christa Pennacchio
- US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
| | | | - Francesca Rossi
- Department of Integrative Marine Ecology (EMI), Stazione Zoologica Anton Dohrn-National Institute of Marine Biology, Ecology and Biotechnology, Genoa, Italy
| | | | | | - Sandra Talbot
- Far Northwestern Institute of Art and Science, Anchorage, AK, USA
| | - Richard Unsworth
- Department of Biosciences, Swansea University, Swansea, UK
- Project Seagrass, the Yard, Bridgend, UK
| | - David H Ward
- US Geological Survey, Alaska Science Center, Anchorage, AK, USA
| | - Tal Dagan
- Institute of General Microbiology, Kiel University, Kiel, Germany
| | - Jeremy Schmutz
- Genome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA
- US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
| | - Jonathan A Eisen
- Department of Evolution and Ecology, University of California, Davis, CA, USA
| | - John J Stachowicz
- Department of Evolution and Ecology, University of California, Davis, CA, USA
- Center for Population Biology, University of California, Davis, CA, USA
| | - Yves Van de Peer
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Gent, Belgium
- Center for Microbial Ecology and Genomics, Department of Biochemistry, Genetics and Microbiology, University of Pretoria, Pretoria, South Africa
- College of Horticulture, Academy for Advanced Interdisciplinary Studies, Nanjing Agricultural University, Nanjing, China
- VIB-UGent Center for Plant Systems Biology, Gent, Belgium
| | - Jeanine L Olsen
- Groningen Institute for Evolutionary Life Sciences, Groningen, The Netherlands
| | - Thorsten B H Reusch
- Marine Evolutionary Ecology, GEOMAR Helmholtz Centre for Ocean Research Kiel, Kiel, Germany.
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3
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Gross CP, Duffy JE, Hovel KA, Kardish MR, Reynolds PL, Boström C, Boyer KE, Cusson M, Eklöf J, Engelen AH, Eriksson BK, Fodrie FJ, Griffin JN, Hereu CM, Hori M, Hughes AR, Ivanov MV, Jorgensen P, Kruschel C, Lee KS, Lefcheck J, McGlathery K, Moksnes PO, Nakaoka M, O'Connor MI, O'Connor NE, Olsen JL, Orth RJ, Peterson BJ, Reiss H, Rossi F, Ruesink J, Sotka EE, Thormar J, Tomas F, Unsworth R, Voigt EP, Whalen MA, Ziegler SL, Stachowicz JJ. The biogeography of community assembly: latitude and predation drive variation in community trait distribution in a guild of epifaunal crustaceans. Proc Biol Sci 2022; 289:20211762. [PMID: 35193403 PMCID: PMC8864368 DOI: 10.1098/rspb.2021.1762] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023] Open
Abstract
While considerable evidence exists of biogeographic patterns in the intensity of species interactions, the influence of these patterns on variation in community structure is less clear. Studying how the distributions of traits in communities vary along global gradients can inform how variation in interactions and other factors contribute to the process of community assembly. Using a model selection approach on measures of trait dispersion in crustaceans associated with eelgrass (Zostera marina) spanning 30° of latitude in two oceans, we found that dispersion strongly increased with increasing predation and decreasing latitude. Ocean and epiphyte load appeared as secondary predictors; Pacific communities were more overdispersed while Atlantic communities were more clustered, and increasing epiphytes were associated with increased clustering. By examining how species interactions and environmental filters influence community structure across biogeographic regions, we demonstrate how both latitudinal variation in species interactions and historical contingency shape these responses. Community trait distributions have implications for ecosystem stability and functioning, and integrating large-scale observations of environmental filters, species interactions and traits can help us predict how communities may respond to environmental change.
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Affiliation(s)
- Collin P Gross
- Department of Evolution and Ecology, University of California, Davis, CA, USA
| | - J Emmett Duffy
- Tennenbaum Marine Observatories Network, MarineGEO, Smithsonian Environmental Research Center, Edgewater, MD, USA
| | - Kevin A Hovel
- Department of Biology, San Diego State University, San Diego, CA, USA
| | - Melissa R Kardish
- Department of Evolution and Ecology, University of California, Davis, CA, USA
| | - Pamela L Reynolds
- DataLab: Data Science and Informatics, University of California, Davis, CA, USA
| | - Christoffer Boström
- Department of Environmental and Marine Biology, Åbo Akademi University, Åbo, Finland
| | - Katharyn E Boyer
- Estuary & Ocean Science Center and Department of Biology, San Francisco State University, San Francisco, CA, USA
| | - Mathieu Cusson
- Sciences fondamentales and Québec Océan, Université du Québec à Chicoutimi, Chicoutimi, Quebec, Canada
| | - Johan Eklöf
- Department of Ecology, Environment and Plant Sciences (DEEP), Stockholm University, Stockholm, Sweden
| | | | | | - F Joel Fodrie
- Institute of Marine Sciences, University of North Carolina at Chapel Hill, Morehead City, NC, USA
| | - John N Griffin
- Department of Biosciences, Swansea University, Swansea, UK
| | - Clara M Hereu
- Universidad Autónoma de Baja California, Mexicali, Baja CA, Mexico
| | - Masakazu Hori
- Fisheries Research and Education Agency, Hatsukaichi, Hiroshima, Japan
| | - A Randall Hughes
- Department of Marine and Environmental Sciences, Northeastern University, Nahant, MA, USA
| | - Mikhail V Ivanov
- Department of Ichthyology and Hydrobiology, St Petersburg State University, St Petersburg, Russia
| | - Pablo Jorgensen
- Instituto de Ciencias Polares, Ambiente y Recursos Naturales, Universidad Nacional de Tierra del Fuego, Ushuaia, Tierra del Fuego, Antártida e Islas del Atlántico Sur, Argentina
| | | | - Kun-Seop Lee
- Department of Biological Sciences, Pusan National University, Busan, South Korea
| | - Jonathan Lefcheck
- DataLab: Data Science and Informatics, University of California, Davis, CA, USA
| | - Karen McGlathery
- Department of Environmental Sciences, University of Virginia, Charlottesville, VA, USA
| | - Per-Olav Moksnes
- Department of Marine Sciences, University of Gothenburg, Goteborg, Sweden
| | | | - Mary I O'Connor
- Biodiversity Research Centre and Department of Zoology, University of British Columbia, Vancouver, British Columbia, Canada
| | - Nessa E O'Connor
- School of Natural Sciences, Trinity College Dublin, Dublin, Republic of Ireland
| | | | - Robert J Orth
- Virginia Institute of Marine Science, College of William and Mary, Gloucester Point, VA, USA
| | - Bradley J Peterson
- School of Marine and Atmospheric Sciences, Stony Brook University, Stony Brook, NY, USA
| | | | - Francesca Rossi
- Centre National de la Récherche Scientifique, ECOSEAS Laboratory, Université de Cote d'Azur, Nice, France
| | - Jennifer Ruesink
- Department of Biology, University of Washington, Seattle, WA, USA
| | - Erik E Sotka
- Grice Marine Laboratory, College of Charleston, Charleston, SC, USA
| | | | - Fiona Tomas
- IMEDEAS (CSIC), Esporles, Islas Baleares, Spain
| | | | - Erin P Voigt
- Department of Biology, San Diego State University, San Diego, CA, USA
| | - Matthew A Whalen
- Hakai Institute, Campbell River, British Columbia, Canada.,University of British Columbia, Vancouver, British Columbia, Canada
| | | | - John J Stachowicz
- Department of Evolution and Ecology, University of California, Davis, CA, USA
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4
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Hovel KA, Duffy JE, Stachowicz JJ, Reynolds P, Boström C, Boyer KE, Cimon S, Cusson M, Fodrie FJ, Gagnon K, Hereu CM, Hori M, Jorgensen P, Kruschel C, Lee KS, Nakaoka M, O'Connor NE, Rossi F, Ruesink J, Tomas F, Ziegler S. Joint effects of patch edges and habitat degradation on faunal predation risk in a widespread marine foundation species. Ecology 2021; 102:e03316. [PMID: 33630346 DOI: 10.1002/ecy.3316] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/14/2020] [Revised: 09/30/2020] [Accepted: 12/06/2020] [Indexed: 11/12/2022]
Abstract
Human activities degrade and fragment coastal marine habitats, reducing their structural complexity and making habitat edges a prevalent seascape feature. Though habitat edges frequently are implicated in reduced faunal survival and biodiversity, results of experiments on edge effects have been inconsistent, calling for a mechanistic approach to the study of edges that explicitly includes indirect and interactive effects of habitat alteration at multiple scales across biogeographic gradients. We used an experimental network spanning 17 eelgrass (Zostera marina) sites across the Atlantic and Pacific oceans and the Mediterranean Sea to determine (1) if eelgrass edges consistently increase faunal predation risk, (2) whether edge effects on predation risk are altered by habitat degradation (shoot thinning), and (3) whether variation in the strength of edge effects among sites can be explained by biogeographical variability in covarying eelgrass habitat features. Contrary to expectations, at most sites, predation risk for tethered crustaceans (crabs or shrimps) was lower along patch edges than in patch interiors, regardless of the extent of habitat degradation. However, the extent to which edges reduced predation risk, compared to the patch interior, was correlated with the extent to which edges supported higher eelgrass structural complexity and prey biomass compared to patch interiors. This suggests an indirect component to edge effects in which the impact of edge proximity on predation risk is mediated by the effect of edges on other key biotic factors. Our results suggest that studies on edge effects should consider structural characteristics of patch edges, which may vary geographically, and multiple ways that humans degrade habitats.
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Affiliation(s)
- Kevin A Hovel
- Department of Biology, Coastal and Marine Institute, San Diego State University, 5500 Campanile Drive, San Diego, California, 92182, USA
| | - J Emmett Duffy
- Tennenbaum Marine Observatories Network, Smithsonian Institution, Edgewater, Maryland, 20013-7012, USA
| | - John J Stachowicz
- Department of Evolution and Ecology, University of California, Davis, One Shields Ave, Davis, California, 95616, USA
| | - Pamela Reynolds
- Tennenbaum Marine Observatories Network, Smithsonian Institution, Edgewater, Maryland, 20013-7012, USA.,DataLab: Data Science and Informatics, University of California, Davis, One Shields Ave, Davis, California, 95616, USA
| | - Christoffer Boström
- Environmental and Marine Biology, Åbo Akademi University, Artillerigatan 6, Åbo, 20520, Finland
| | - Katharyn E Boyer
- Estuary & Ocean Science Center, Department of Biology, San Francisco State University, San Francisco, California, 94132, USA
| | - Stéphanie Cimon
- Département des Sciences Fondamentales & Québec-Océan, Université du Québec à Chicoutimi, Chicoutimi, Québec, G7H 2B1, Canada
| | - Mathieu Cusson
- Département des Sciences Fondamentales & Québec-Océan, Université du Québec à Chicoutimi, Chicoutimi, Québec, G7H 2B1, Canada
| | - Fredrick Joel Fodrie
- Institute of Marine Sciences, University of North Carolina at Chapel Hill, Morehead City, North Carolina, 28557, USA
| | - Karine Gagnon
- Environmental and Marine Biology, Åbo Akademi University, Artillerigatan 6, Åbo, 20520, Finland
| | - Clara M Hereu
- Facultad de Ciencias, UABC, Km. 103 Carretera Tijuana - Ensenada, Ensenada, Baja California C.P. 22860, Mexico
| | - Masakazu Hori
- Fisheries Research Agency, Hiroshima, 739-0452, Japan
| | - Pablo Jorgensen
- Geomare AC, Paseo del Pedregal No. 82, Ensenada, 22860, Mexico
| | - Claudia Kruschel
- Department of Ecology, Agronomy and Aquaculture, University of Zadar, Zadar, 23000, Croatia
| | - Kun-Seop Lee
- Department of Biological Sciences, Pusan National University, Busan, 46241, Korea
| | - Masahiro Nakaoka
- Akkeshi Marine Station, Field Science Center for Northern Biosphere, Hokkaido University, Akkeshi, 088-1113, Japan
| | - Nessa E O'Connor
- School of Biological Sciences, Queen's University Belfast, 97 Lisburn Road, Belfast, UK
| | - Francesca Rossi
- ECOSEAS Laboratory, Université de la Cote d'Azur, CNRS, Nice, France
| | - Jennifer Ruesink
- Department of Biology, University of Washington, Seattle, Washington, 98195, USA
| | - Fiona Tomas
- IMEDEA (UIB-CSIC), C/Miquel Marques 21, Esporles, 07190, Spain.,Department of Fisheries and Wildlife, Oregon State University, Corvallis, Oregon, 97331, USA
| | - Shelby Ziegler
- School of Marine Science, Virginia Institute of Marine Science, The College of William and Mary, Gloucester Point, Virginia, 23062-1346, USA
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5
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Boissin E, Neglia V, Baksay S, Micu D, Bat L, Topaloglu B, Todorova V, Panayotova M, Kruschel C, Milchakova N, Voutsinas E, Beqiraj S, Nasto I, Aglieri G, Taviani M, Zane L, Planes S. Chaotic genetic structure and past demographic expansion of the invasive gastropod Tritia neritea in its native range, the Mediterranean Sea. Sci Rep 2020; 10:21624. [PMID: 33303767 PMCID: PMC7730386 DOI: 10.1038/s41598-020-77742-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2019] [Accepted: 11/16/2020] [Indexed: 11/21/2022] Open
Abstract
To better predict population evolution of invasive species in introduced areas it is critical to identify and understand the mechanisms driving genetic diversity and structure in their native range. Here, we combined analyses of the mitochondrial COI gene and 11 microsatellite markers to investigate both past demographic history and contemporaneous genetic structure in the native area of the gastropod Tritia neritea, using Bayesian skyline plots (BSP), multivariate analyses and Bayesian clustering. The BSP framework revealed population expansions, dated after the last glacial maximum. The haplotype network revealed a strong geographic clustering. Multivariate analyses and Bayesian clustering highlighted the strong genetic structure at all scales, between the Black Sea and the Adriatic Sea, but also within basins. Within basins, a random pattern of genetic patchiness was observed, suggesting a superimposition of processes involving natural biological effects (no larval phase and thus limited larval dispersal) and putative anthropogenic transport of specimens. Contrary to the introduced area, no isolation-by-distance patterns were recovered in the Mediterranean or the Black Seas, highlighting different mechanisms at play on both native and introduced areas, triggering unknown consequences for species’ evolutionary trajectories. These results of Tritia neritea populations on its native range highlight a mixture of ancient and recent processes, with the effects of paleoclimates and life history traits likely tangled with the effects of human-mediated dispersal.
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Affiliation(s)
- Emilie Boissin
- PSL Research University: EPHE-UPVD-CNRS, USR 3278 CRIOBE, Laboratoire d'Excellence « CORAIL », Université de Perpignan, 52 Avenue Paul Alduy, 66860, Perpignan Cedex, France.
| | - Valentina Neglia
- PSL Research University: EPHE-UPVD-CNRS, USR 3278 CRIOBE, Laboratoire d'Excellence « CORAIL », Université de Perpignan, 52 Avenue Paul Alduy, 66860, Perpignan Cedex, France
| | - Sandra Baksay
- PSL Research University: EPHE-UPVD-CNRS, USR 3278 CRIOBE, Laboratoire d'Excellence « CORAIL », Université de Perpignan, 52 Avenue Paul Alduy, 66860, Perpignan Cedex, France.,Laboratoire Evolution & Diversite Biologique, University TOULOUSE III - Paul Sabatier, 118 route de Narbonne, 31062, Toulouse Cedex 09, France
| | - Dragos Micu
- Romanian Waters National Authority, 127 Mircea cel Batran Blvd., 900592, Constanţa, Romania
| | - Levent Bat
- Department of Hydrobiology, Sinop University Faculty of Fisheries, 57000, Sinop, Turkey
| | - Bulent Topaloglu
- Faculty of Aquatic Sciences, Istanbul University, Ordu St No: 8, 34134, Istanbul, Turkey
| | - Valentina Todorova
- Institute of Oceanology-BAS (IO-BAS), P.O. Box 152, 9000, Varna, Bulgaria
| | - Marina Panayotova
- Institute of Oceanology-BAS (IO-BAS), P.O. Box 152, 9000, Varna, Bulgaria
| | - Claudia Kruschel
- University of Zadar, Ul. Mihovila Pavlinovića, 23000, Zadar, Croatia
| | - Nataliya Milchakova
- Institute of Biology of the Southern Seas, 2 Nakhimov Ave., Sevastopol, Russia, 299011
| | - Emanuela Voutsinas
- Institute of Oceanography, Hellenic Centre for Marine Research, P.O. Box 712, 19013, Anavyssos, Greece
| | - Sajmir Beqiraj
- Faculty of Natural Sciences, Department of Biology, University of Tirana, Bulevardi "Zogu I Parë", 25/1, 1001, Tiranë, Albania
| | - Ina Nasto
- Department of Biology, Faculty of Technical Sciences, Vlora University, 9401, Vlora, Albania
| | - Giorgio Aglieri
- Department of Earth and Marine Sciences (DiSTeM), University of Palermo, via Archirafi 28, 90123, Palermo, Italy.,Consorzio Nazionale Interuniversitario per le Scienze del Mare (CoNISMa), Piazzale Flaminio 9, 00196, Rome, Italy
| | - Marco Taviani
- Institute of Marine Sciences (ISMAR), CNR, via Gobetti 101, 40129, Bologna, Italy.,Stazione Zoologica Anton Dohrn, Villa Comunale, 80121, Napoli, Italy.,Department of Biology, Woods Hole Oceanographic Institution, 266 Woods Hole Road, Woods Hole, MA, 02543, USA
| | - Lorenzo Zane
- Consorzio Nazionale Interuniversitario per le Scienze del Mare (CoNISMa), Piazzale Flaminio 9, 00196, Rome, Italy.,Dipartimento di Biologia, Università di Padova, via U. Bassi/58B, 35121, Padua, Italy
| | - Serge Planes
- PSL Research University: EPHE-UPVD-CNRS, USR 3278 CRIOBE, Laboratoire d'Excellence « CORAIL », Université de Perpignan, 52 Avenue Paul Alduy, 66860, Perpignan Cedex, France
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6
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Reynolds PL, Stachowicz JJ, Hovel K, Boström C, Boyer K, Cusson M, Eklöf JS, Engel FG, Engelen AH, Eriksson BK, Fodrie FJ, Griffin JN, Hereu CM, Hori M, Hanley TC, Ivanov M, Jorgensen P, Kruschel C, Lee KS, McGlathery K, Moksnes PO, Nakaoka M, O'Connor MI, O'Connor NE, Orth RJ, Rossi F, Ruesink J, Sotka EE, Thormar J, Tomas F, Unsworth RKF, Whalen MA, Duffy JE. Latitude, temperature, and habitat complexity predict predation pressure in eelgrass beds across the Northern Hemisphere. Ecology 2019; 99:29-35. [PMID: 29083472 DOI: 10.1002/ecy.2064] [Citation(s) in RCA: 44] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 05/15/2017] [Revised: 08/23/2017] [Accepted: 08/30/2017] [Indexed: 11/08/2022]
Abstract
Latitudinal gradients in species interactions are widely cited as potential causes or consequences of global patterns of biodiversity. However, mechanistic studies documenting changes in interactions across broad geographic ranges are limited. We surveyed predation intensity on common prey (live amphipods and gastropods) in communities of eelgrass (Zostera marina) at 48 sites across its Northern Hemisphere range, encompassing over 37° of latitude and four continental coastlines. Predation on amphipods declined with latitude on all coasts but declined more strongly along western ocean margins where temperature gradients are steeper. Whereas in situ water temperature at the time of the experiments was uncorrelated with predation, mean annual temperature strongly positively predicted predation, suggesting a more complex mechanism than simply increased metabolic activity at the time of predation. This large-scale biogeographic pattern was modified by local habitat characteristics; predation declined with higher shoot density both among and within sites. Predation rates on gastropods, by contrast, were uniformly low and varied little among sites. The high replication and geographic extent of our study not only provides additional evidence to support biogeographic variation in predation intensity, but also insight into the mechanisms that relate temperature and biogeographic gradients in species interactions.
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Affiliation(s)
- Pamela L Reynolds
- Data Science Initiative, University of California, Davis, California, 95616, USA.,Department of Evolution and Ecology, University of California, Davis, California, 95616, USA.,Virginia Institute of Marine Science, College of William & Mary, Gloucester Point, Virginia, 23062, USA
| | - John J Stachowicz
- Department of Evolution and Ecology, University of California, Davis, California, 95616, USA
| | - Kevin Hovel
- Department of Biology, Coastal & Marine Institute, San Diego State University, San Diego, California, 92182, USA
| | | | - Katharyn Boyer
- San Francisco State University, San Francisco, California, 94132, USA
| | - Mathieu Cusson
- Université du Québec à Chicoutimi, Chicoutimi, Québec, G7H 2B1, Canada
| | | | - Friederike G Engel
- University of Groningen, Groningen, The Netherlands.,GEOMAR Helmholtz Centre for Ocean Research, Kiel, Germany
| | | | | | - F Joel Fodrie
- Institute of Marine Sciences, University of North Carolina at Chapel Hill, Morehead City, North Carolina, 28557, USA
| | - John N Griffin
- College of Science, Swansea University, Singleton Park, Swansea, SA2 8PP, UK
| | - Clara M Hereu
- Universidad Autónoma de Baja California, Ensenada, Baja California, Mexico
| | - Masakazu Hori
- National Research Institute of Fisheries and Environment of Inland Sea (FEIS) Japan Fisheries Research and Education Agency (FRA) Hatsukaichi, Hiroshima, 739-0452, Japan
| | - Torrance C Hanley
- Northeastern University Marine Science Center, Nahant, Massachusetts, 01908, USA
| | | | - Pablo Jorgensen
- Universidad Autónoma de Baja California, Ensenada, Baja California, Mexico.,Geomare, Ensenada, Baja California, Mexico
| | | | | | | | - Per-Olav Moksnes
- Department of Marine Sciences, University of Gothenburg, Gothenburg, Sweden
| | - Masahiro Nakaoka
- Akkeshi Marine Station, Field Science Center for Northern Biosphere, Hokkaido University, Akkeshi, Hokkaido, 088-1113, Japan
| | - Mary I O'Connor
- University of British Columbia, Vancouver, British Columbia, V6T 1Z4, Canada
| | | | - Robert J Orth
- Virginia Institute of Marine Science, College of William & Mary, Gloucester Point, Virginia, 23062, USA
| | - Francesca Rossi
- CNRS, UMR 9190 MARBEC, Université de Montpellier, Montpellier, France
| | | | - Erik E Sotka
- College of Charleston, Charleston, South Carolina, 29412, USA
| | | | - Fiona Tomas
- Oregon State University, Corvallis, Oregon, 97331, USA.,Instituto Mediterráneo de Estudios Avanzados, Illes Balears UIB-CSIC, Spain
| | | | - Matthew A Whalen
- Department of Evolution and Ecology, University of California, Davis, California, 95616, USA
| | - J Emmett Duffy
- Virginia Institute of Marine Science, College of William & Mary, Gloucester Point, Virginia, 23062, USA.,Tennenbaum Marine Observatories Network, Smithsonian Institution, Edgewater, Maryland, 21037, USA
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7
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Paterno M, Schiavina M, Aglieri G, Ben Souissi J, Boscari E, Casagrandi R, Chassanite A, Chiantore M, Congiu L, Guarnieri G, Kruschel C, Macic V, Marino IAM, Papetti C, Patarnello T, Zane L, Melià P. Population genomics meet Lagrangian simulations: Oceanographic patterns and long larval duration ensure connectivity among Paracentrotus lividus populations in the Adriatic and Ionian seas. Ecol Evol 2017; 7:2463-2479. [PMID: 28428839 PMCID: PMC5395429 DOI: 10.1002/ece3.2844] [Citation(s) in RCA: 30] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2016] [Revised: 01/20/2017] [Accepted: 01/28/2017] [Indexed: 01/15/2023] Open
Abstract
Connectivity between populations influences both their dynamics and the genetic structuring of species. In this study, we explored connectivity patterns of a marine species with long-distance dispersal, the edible common sea urchin Paracentrotus lividus, focusing mainly on the Adriatic-Ionian basins (Central Mediterranean). We applied a multidisciplinary approach integrating population genomics, based on 1,122 single nucleotide polymorphisms (SNPs) obtained from 2b-RAD in 275 samples, with Lagrangian simulations performed with a biophysical model of larval dispersal. We detected genetic homogeneity among eight population samples collected in the focal Adriatic-Ionian area, whereas weak but significant differentiation was found with respect to two samples from the Western Mediterranean (France and Tunisia). This result was not affected by the few putative outlier loci identified in our dataset. Lagrangian simulations found a significant potential for larval exchange among the eight Adriatic-Ionian locations, supporting the hypothesis of connectivity of P. lividus populations in this area. A peculiar pattern emerged from the comparison of our results with those obtained from published P. lividus cytochrome b (cytb) sequences, the latter revealing genetic differentiation in the same geographic area despite a smaller sample size and a lower power to detect differences. The comparison with studies conducted using nuclear markers on other species with similar pelagic larval durations in the same Adriatic-Ionian locations indicates species-specific differences in genetic connectivity patterns and warns against generalizing single-species results to the entire community of rocky shore habitats.
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Affiliation(s)
- Marta Paterno
- Department of BiologyUniversity of PadovaPadovaItaly
- Consorzio Nazionale Interuniversitario per le Scienze del Mare (CoNISMa)RomaItaly
| | - Marcello Schiavina
- Consorzio Nazionale Interuniversitario per le Scienze del Mare (CoNISMa)RomaItaly
- Dipartimento di Elettronica, Informazione e BioingegneriaPolitecnico di MilanoMilanoItaly
| | - Giorgio Aglieri
- Consorzio Nazionale Interuniversitario per le Scienze del Mare (CoNISMa)RomaItaly
- Department of Biological and Environmental Sciences and TechnologiesUniversity of SalentoLecceItaly
| | | | - Elisa Boscari
- Department of BiologyUniversity of PadovaPadovaItaly
- Consorzio Nazionale Interuniversitario per le Scienze del Mare (CoNISMa)RomaItaly
| | - Renato Casagrandi
- Consorzio Nazionale Interuniversitario per le Scienze del Mare (CoNISMa)RomaItaly
- Dipartimento di Elettronica, Informazione e BioingegneriaPolitecnico di MilanoMilanoItaly
| | - Aurore Chassanite
- USR 3278 CNRS‐EPHECRIOBEUniversité de Perpignan Via DominitiaPerpignan CedexFrance
| | - Mariachiara Chiantore
- Consorzio Nazionale Interuniversitario per le Scienze del Mare (CoNISMa)RomaItaly
- Department for Earth, Environment and Life Sciences (DiSTAV)University of GenoaGenoaItaly
| | - Leonardo Congiu
- Department of BiologyUniversity of PadovaPadovaItaly
- Consorzio Nazionale Interuniversitario per le Scienze del Mare (CoNISMa)RomaItaly
| | - Giuseppe Guarnieri
- Consorzio Nazionale Interuniversitario per le Scienze del Mare (CoNISMa)RomaItaly
- Department of Biological and Environmental Sciences and TechnologiesUniversity of SalentoLecceItaly
| | | | - Vesna Macic
- Institute of Marine Biology Kotor (IBMK)KotorMontenegro
| | - Ilaria A. M. Marino
- Department of BiologyUniversity of PadovaPadovaItaly
- Consorzio Nazionale Interuniversitario per le Scienze del Mare (CoNISMa)RomaItaly
| | - Chiara Papetti
- Department of BiologyUniversity of PadovaPadovaItaly
- Consorzio Nazionale Interuniversitario per le Scienze del Mare (CoNISMa)RomaItaly
| | - Tomaso Patarnello
- Consorzio Nazionale Interuniversitario per le Scienze del Mare (CoNISMa)RomaItaly
- Department of Comparative Biomedicine and Food ScienceUniversity of PadovaLegnaroPadovaItaly
| | - Lorenzo Zane
- Department of BiologyUniversity of PadovaPadovaItaly
- Consorzio Nazionale Interuniversitario per le Scienze del Mare (CoNISMa)RomaItaly
| | - Paco Melià
- Consorzio Nazionale Interuniversitario per le Scienze del Mare (CoNISMa)RomaItaly
- Dipartimento di Elettronica, Informazione e BioingegneriaPolitecnico di MilanoMilanoItaly
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8
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Boissin E, Micu D, Janczyszyn-Le Goff M, Neglia V, Bat L, Todorova V, Panayotova M, Kruschel C, Macic V, Milchakova N, Keskin Ç, Anastasopoulou A, Nasto I, Zane L, Planes S. Contemporary genetic structure and postglacial demographic history of the black scorpionfish, Scorpaena porcus, in the Mediterranean and the Black Seas. Mol Ecol 2016; 25:2195-209. [PMID: 26989881 DOI: 10.1111/mec.13616] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2015] [Revised: 02/09/2016] [Accepted: 03/11/2016] [Indexed: 12/24/2022]
Abstract
Understanding the distribution of genetic diversity in the light of past demographic events linked with climatic shifts will help to forecast evolutionary trajectories of ecosystems within the current context of climate change. In this study, mitochondrial sequences and microsatellite loci were analysed using traditional population genetic approaches together with Bayesian dating and the more recent approximate Bayesian computation scenario testing. The genetic structure and demographic history of a commercial fish, the black scorpionfish, Scorpaena porcus, was investigated throughout the Mediterranean and Black Seas. The results suggest that the species recently underwent population expansions, in both seas, likely concomitant with the warming period following the Last Glacial Maximum, 20 000 years ago. A weak contemporaneous genetic differentiation was identified between the Black Sea and the Mediterranean Sea. However, the genetic diversity was similar for populations of the two seas, suggesting a high number of colonizers entered the Black Sea during the interglacial period and/or the presence of a refugial population in the Black Sea during the glacial period. Finally, within seas, an east/west genetic differentiation in the Adriatic seems to prevail, whereas the Black Sea does not show any structured spatial genetic pattern of its population. Overall, these results suggest that the Black Sea is not that isolated from the Mediterranean, and both seas revealed similar evolutionary patterns related to climate change and changes in sea level.
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Affiliation(s)
- E Boissin
- EPHE, PSL Research University, UPVD, CNRS, USR 3278 CRIOBE, Perpignan, F-66360, France.,Laboratoire d'Excellence CRIOBE, BP 1013, 98729, Papetoai, Moorea, Polynésie Française
| | - D Micu
- National Institute of Marine Research and Development, Grigore Antipa, Constanta, 900581, Romania
| | - M Janczyszyn-Le Goff
- EPHE, PSL Research University, UPVD, CNRS, USR 3278 CRIOBE, Perpignan, F-66360, France.,Laboratoire d'Excellence CRIOBE, BP 1013, 98729, Papetoai, Moorea, Polynésie Française
| | - V Neglia
- EPHE, PSL Research University, UPVD, CNRS, USR 3278 CRIOBE, Perpignan, F-66360, France.,Laboratoire d'Excellence CRIOBE, BP 1013, 98729, Papetoai, Moorea, Polynésie Française
| | - L Bat
- Department of Marine Biology and Ecology, Faculty of Fisheries, Sinop University, Sinop, TR57000, Turkey
| | - V Todorova
- IO-BAS - Institute of Oceanology, PO Box 152, Varna, 9000, Bulgaria
| | - M Panayotova
- IO-BAS - Institute of Oceanology, PO Box 152, Varna, 9000, Bulgaria
| | - C Kruschel
- University of Zadar, Ul. Mihovila Pavlinovića, Zadar, 23000, Croatia
| | - V Macic
- Institute of Marine Biology Kotor (IBMK), Dobrota bb, PO Box 69, Kotor, 85330, Montenegro
| | - N Milchakova
- Institute of Marine Biological Research (IMBR), 2 Nakhimov ave., Sevastopol, 299011, Russia
| | - Ç Keskin
- Faculty of Fisheries, Istanbul University, Ordu St 200, Istanbul, TR-34470, Turkey
| | - A Anastasopoulou
- Hellenic Centre for Marine Research, 46.7 km Athinon-Souniou Av., Anavyssos, 19013, Greece
| | - I Nasto
- Department of Biology, Faculty of Technical Sciences, Vlora University, Vlora, 9401, Albania
| | - L Zane
- Department of Biology, University of Padova, via U. Bassi/58B, Padova, I-35121, Italy
| | - S Planes
- EPHE, PSL Research University, UPVD, CNRS, USR 3278 CRIOBE, Perpignan, F-66360, France.,Laboratoire d'Excellence CRIOBE, BP 1013, 98729, Papetoai, Moorea, Polynésie Française
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9
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Schultz ST, Kruschel C, Bakran-Petricioli T, Petricioli D. Error, Power, and Blind Sentinels: The Statistics of Seagrass Monitoring. PLoS One 2015; 10:e0138378. [PMID: 26367863 PMCID: PMC4569085 DOI: 10.1371/journal.pone.0138378] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2015] [Accepted: 08/28/2015] [Indexed: 11/19/2022] Open
Abstract
We derive statistical properties of standard methods for monitoring of habitat cover worldwide, and criticize them in the context of mandated seagrass monitoring programs, as exemplified by Posidonia oceanica in the Mediterranean Sea. We report the novel result that cartographic methods with non-trivial classification errors are generally incapable of reliably detecting habitat cover losses less than about 30 to 50%, and the field labor required to increase their precision can be orders of magnitude higher than that required to estimate habitat loss directly in a field campaign. We derive a universal utility threshold of classification error in habitat maps that represents the minimum habitat map accuracy above which direct methods are superior. Widespread government reliance on blind-sentinel methods for monitoring seafloor can obscure the gradual and currently ongoing losses of benthic resources until the time has long passed for meaningful management intervention. We find two classes of methods with very high statistical power for detecting small habitat cover losses: 1) fixed-plot direct methods, which are over 100 times as efficient as direct random-plot methods in a variable habitat mosaic; and 2) remote methods with very low classification error such as geospatial underwater videography, which is an emerging, low-cost, non-destructive method for documenting small changes at millimeter visual resolution. General adoption of these methods and their further development will require a fundamental cultural change in conservation and management bodies towards the recognition and promotion of requirements of minimal statistical power and precision in the development of international goals for monitoring these valuable resources and the ecological services they provide.
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Affiliation(s)
- Stewart T. Schultz
- Department of Ecology, Agriculture, and Aquaculture, University of Zadar, M. Pavlinovica bb, 23000 Zadar, Croatia
- * E-mail:
| | - Claudia Kruschel
- Department of Ecology, Agriculture, and Aquaculture, University of Zadar, M. Pavlinovica bb, 23000 Zadar, Croatia
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10
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Kruschel C, Castenholz RW. The effect of solar UV and visible irradiance on the vertical movements of cyanobacteria in microbial mats of hypersaline waters. FEMS Microbiol Ecol 1998. [DOI: 10.1111/j.1574-6941.1998.tb00525.x] [Citation(s) in RCA: 63] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022] Open
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