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Boydaş E, Orhan E, Boydaş M, Cömert E. Chemical Shifts of Kα and Kβ1,3 X-ray Emission Spectra for Oxygen Compounds of Ti, Cr, Fe, Co, Cu with WDXRF. ACTA ACUST UNITED AC 2015. [DOI: 10.1016/j.sbspro.2015.06.327] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Yilmaz K, Zengin Y, Ercisli S, Orhan E, Yalcinkaya E, Taner O, Erdogan A. Biodiversity, Ex-Situ Conservation and Characterization of Cornelian Cherry (Cornus MasL.) Genotypes in Turkey. BIOTECHNOL BIOTEC EQ 2014. [DOI: 10.1080/13102818.2009.10817629] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022] Open
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Orhan E, Nardemir G, Agar G, Ercisli S. Genetic variation among quince (Cydonia oblonga Mill.) genotypes sampled from the Coruh valley in Turkey. Genet Mol Res 2014; 13:445-9. [PMID: 24535871 DOI: 10.4238/2014.january.21.12] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
Turkey has very rich quince genetic resources, and the country currently dominates world quince production. In particular, the northeastern part of the country has notable Cydonia oblonga Mill. germplasm. Authenticating the identity of germplasm resources of C. oblonga Mill. would be of great value for breeding practices. In the present study, genetic variations of 14 C. oblonga Mill. genotypes sampled from the Coruh valley of Turkey were investigated. Ten random primers generated 53 DNA markers. The highest polymorphism ratio was observed in the OPA07 primer (86%), while the lowest was observed in OPA03 (29%). The percentage of polymorphic bands was 51%, which demonstrated the efficiency of the primers used. The similarity matrix revealed that the similarity among genotypes ranged between 0.42 and 0.96. The identified random amplified polymorphic DNA markers enabled clear discrimination among all genotypes considered.
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Affiliation(s)
- E Orhan
- Department of Agricultural Biotechnology, Faculty of Agriculture, Erzurum, Turkey
| | - G Nardemir
- Department of Biology, Faculty of Sciences, Ataturk University, Erzurum, Turkey
| | - G Agar
- Department of Biology, Faculty of Sciences, Ataturk University, Erzurum, Turkey
| | - S Ercisli
- Department of Horticulture, Faculty of Agriculture, Erzurum, Turkey
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Orhan E, Ercisli S, Esitken A, Sengul M. Molecular and morphological characterization of pomegranate (Punica granatum L.) genotypes sampled from Coruh Valley in Turkey. Genet Mol Res 2014. [PMID: 24446337 DOI: 10.4238/2014] [Citation(s) in RCA: 46] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/28/2023]
Abstract
The pomegranate is one of the oldest fruits that are traditionally consumed by the local inhabitants of the Coruh Valley, Turkey. In this study, the molecular and morphological characteristics of 19 promising pomegranate genotypes selected from the Coruh Valley were evaluated. For the morphological evaluation, 22 quantitative fruit characteristics were used. For the molecular evaluation, 47 random amplified polymorphic DNA (RAPD) primers were used for polymerase chain reaction analysis. The principle component analysis of 22 quantitative fruit characteristics revealed that fruit weight and skin color are dominant traits for genotype discrimination. The unweighted average distance cluster of fruit characteristics revealed 3 distinct groups. Among the 47 RAPD primers, 9 exhibited reliable polymorphic patterns, and generated a total of 63 RAPD bands, of which 49.2% were polymorphic. The similarity matrix showed that the highest (0.920) and lowest (0.556) genetic similarities occurred between the APS13 and APS28 genotypes and the APS12 and APS42 genotypes, respectively. We determined clear discrepancies between the morphological and molecular data; consequently, the differences obtained among genotypes for fruit characteristics did not support genetic relationships among genotypes. In conclusion, molecular data provided the most reliable results at the DNA level.
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Affiliation(s)
- E Orhan
- Department of Horticulture, Faculty of Agriculture, Ataturk University, Erzurum, Turkey
| | - S Ercisli
- Department of Agricultural Biotechnology, Faculty of Agriculture, Ataturk University, Erzurum, Turkey
| | - A Esitken
- Department of Horticulture, Faculty of Agriculture, Selcuk University, Selcuklu, Konya, Turkey
| | - M Sengul
- Department of Food Engineering, Faculty of Agriculture, Ataturk University, Erzurum, Turkey
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Orhan E, Ercisli S, Esitken A, Sengul M. Molecular and morphological characterization of pomegranate (Punica granatum L.) genotypes sampled from Coruh Valley in Turkey. Genet Mol Res 2014; 13:6375-82. [PMID: 24446337 DOI: 10.4238/2014.january.14.4] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
The pomegranate is one of the oldest fruits that are traditionally consumed by the local inhabitants of the Coruh Valley, Turkey. In this study, the molecular and morphological characteristics of 19 promising pomegranate genotypes selected from the Coruh Valley were evaluated. For the morphological evaluation, 22 quantitative fruit characteristics were used. For the molecular evaluation, 47 random amplified polymorphic DNA (RAPD) primers were used for polymerase chain reaction analysis. The principle component analysis of 22 quantitative fruit characteristics revealed that fruit weight and skin color are dominant traits for genotype discrimination. The unweighted average distance cluster of fruit characteristics revealed 3 distinct groups. Among the 47 RAPD primers, 9 exhibited reliable polymorphic patterns, and generated a total of 63 RAPD bands, of which 49.2% were polymorphic. The similarity matrix showed that the highest (0.920) and lowest (0.556) genetic similarities occurred between the APS13 and APS28 genotypes and the APS12 and APS42 genotypes, respectively. We determined clear discrepancies between the morphological and molecular data; consequently, the differences obtained among genotypes for fruit characteristics did not support genetic relationships among genotypes. In conclusion, molecular data provided the most reliable results at the DNA level.
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Affiliation(s)
- E Orhan
- Department of Horticulture, Faculty of Agriculture, Ataturk University, Erzurum, Turkey
| | - S Ercisli
- Department of Agricultural Biotechnology, Faculty of Agriculture, Ataturk University, Erzurum, Turkey
| | - A Esitken
- Department of Horticulture, Faculty of Agriculture, Selcuk University, Selcuklu, Konya, Turkey
| | - M Sengul
- Department of Food Engineering, Faculty of Agriculture, Ataturk University, Erzurum, Turkey
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Baykal B, Ertas M, Orhan E, Turkish Prevalence Study Group. Gender Differences of Migraine: Results of a Nationwide Home Based Study in Turkey (P04.257). Neurology 2012. [DOI: 10.1212/wnl.78.1_meetingabstracts.p04.257] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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Abstract
Mulberry (Morus spp, Moraceae) is an important horticultural crop in Turkey, which is one of the main world producers of mulberry fruit. We evaluated the genetic relationships among 26 mulberry genotypes selected for agronomic characteristics, using RAPD markers. A total of 367 DNA markers were generated with 34 random primers. The highest genetic similarity (0.80) was observed between Oltu58 (M. nigra) and Olur90 (M. nigra) genotypes. The genotypes Oltu3 (M. alba) and Oltu18 (M. rubra) were the most distant (0.36). We found that the RAPD technique is a useful tool to discriminate mulberry genotypes at both the intra- and interspecific level. This type of information will aid in accurate identification of useful genotypes for breeding programs.
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Affiliation(s)
- E Orhan
- Department of Agricultural Biotechnology, Faculty of Agriculture, Ataturk University, Erzurum, Turkey
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Abstract
Turkey is one of the most important genetic resources of the date plum, Diospyros lotus, especially in the northeastern part of the country. Authenticating the identity of germplasm resources of D. lotus would be of great value for breeding. We examined the genetic variability of 11 D. lotus genotypes sampled from Coruh Valley in Turkey. One hundred and twenty-eight DNA markers were generated by 12 random primers. The highest polymorphism ratio was observed with the primer OPA-01 (71%) while the lowest was with OPY-01 (36%). The band size was between 350 and 2500 bp for these primers. The percentage of polymorphic bands was 58%, which demonstrated the efficiency of these primers. The similarity between genotypes ranged from 0.48 to 0.76. The RAPD markers permitted us to distinguish all the genotypes.
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Affiliation(s)
- N Yildirim
- Department of Biology, Faculty of Sciences, Ataturk University, Erzurum, Turkey
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Erturk Y, Ercisli S, Maghradze D, Orhan E, Agar G. An assessment of genetic variability and relationships among wild-grown blackthorn (Prunus spinosa L.) plants based on RAPD markers. Genet Mol Res 2009; 8:1238-44. [PMID: 19876864 DOI: 10.4238/vol8-4gmr641] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
Prunus spinosa, blackthorn, exists as wild populations that inhabit uncultivated uplands of Coruh Valley in the northeastern part of Turkey; the fruit is used to make preserves. We examined genetic diversity in wild-grown Prunus spinosa; 16 individual plants from wild populations of Coruh Valley were sampled and subjected to RAPD (random amplified polymorphic DNA) analysis. We tested 51 random decamer primers; 15 of them gave reproducible polymorphic patterns. These 15 primers produced 226 bands, of which 65% were polymorphic. A UPGMA dendrogram clearly divided the genotypes into four groups; we concluded that RAPD analysis can be used for examining genetic relatedness among blackthorn genotypes.
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Affiliation(s)
- Y Erturk
- Hamza Polat Vocational School, Ataturk University, Ispir-Erzurum, Turkey
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Arendt G, Orhan E, Koutsilieri E, Maschke M, Sopper S, Husstedt IW, Lindecke A, Nolting T. Neuropsychologische Leistungsfähigkeit und veränderte Immunkontrolle im Liquor von HIV-Patienten. Akt Neurol 2009. [DOI: 10.1055/s-0029-1238627] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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Nolting T, Orhan E, Husstedt IW, Maschke M, Sopper S, Lindecke A, Koutsilieri E, Arendt G. HIV-assoziierte Demenz: Pathomechanismen in verschiedenen Stadien der Infektion. Akt Neurol 2009. [DOI: 10.1055/s-0029-1238324] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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Greco OT, Jacob JLB, Parro A, Ruiz MA, Lago MR, Santos AB, Takeda RT, Abreu AC, Berruezo A, Vatasescu RG, Mont L, Tamborero D, Sitges M, Andreu D, Silva E, Brugada J, Castellant P, Orhan E, Fatemi M, Etienne Y, Valls-Bertault V, Blanc JJ, Vatasescu RG, Berruezo A, Iorgulaescu C, Vasile A, Constantinescu D, Stanciu A, Dumitrescu N, Dorobantu M, Khan FZ, Read PA, Virdee MS, Fynn SP, Dutka DP, Meiltz A, Sunthorn H, Burri H, Schaerer N, Shah D, Mihalcz A, Kassai I, Foldesi CS, Kardos A, Szili-Torok T, Van Bommel RJ, Delgado V, Borleffs CJW, Schalij MJ, Gorcsan J, Bax JJ, Sideris S, Skiadas I, Gatzoulis K, Vlasseros I, Trantalis G, Kalovidouris N, Stefanadis C, Kallikazaros I, Khan FZ, Read PA, Virdee MS, Fynn SP, Dutka DP, Laish-Farkash A, Nof E, Luria D, Yonat H, Fridman M, Eldar M, Antzelevitch C, Glikson M, Van Meerwijk WPM, Umar S, Van Der Laarse A, Pijnappels DA, Schalij MJ, Ypey DL, Partemi S, Berne P, Berruezo A, Batlle M, Mont L, Oliva A, Brugada R, Brugada J, Saravanan P, Pollock R, O'neill S, Davidson N, Dobrzynski H, Lacunza Ruiz FJ, Gimeno-Blanes JR, Garcia-Alberola A, Oliva-Sandoval MJ, Garcia-Molina E, Madrid E, Sabater-Molina M, Valdes M, De Roest G, Russel IK, Gotte MJW, Allaart CP, De Cock CC, Van Rossum AC, Mcgrew FA, Johnson EJ, Coppess MA, Hamilton B, Charlton TA, Charlton S, Sims JJ, Perrotta L, Ricciardi G, Pieragnoli P, Sofi F, Gori AM, Abbate R, Padeletti L, Michelucci A, Buck S, Maass AH, Schoonderwoerd BA, Van Veldhuisen DJ, Van Gelder IC, Ando K, Soga Y, Arita T, Goya M, Doi T, Shizuta S, Kimura T, Nobuyoshi M. Poster Session 4: CRT II. Europace 2009. [DOI: 10.1093/europace/euq241] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Vidal B, Tolosana JM, Sitges M, Delgado V, Silva E, Castel MA, Brugada J, Mont L, Khan FZ, Read PA, Salahshouri P, Bayrakdar MA, Matousova D, Virdee MS, Fynn SP, Dutka DP, Clemens M, Nagy-Balo E, Herczku C, Kun C, Toth Z, Edes I, Csanadi Z, Theilade J, Holmegard HN, Dunoe M, Olesen MS, Haunsoe S, Benn M, Svendsen JH, Digby G, Daubney ME, Baggs J, Campbell D, Simpson CS, Redfearn DP, Abdollah H, Baranchuk A, Seifert M, Schau T, Moeller V, Meyhoefer J, Fleck E, Butter C, Raffa S, Grosse A, Brunelli M, Regoli F, Schreiber M, Wauters K, Geller JC, Carmo P, Cavaco D, Adragao P, Parreira L, Santos K, Morgado F, Marcelino S, Silva A, Muto C, Celentano E, Canciello M, Carreras G, Calvanese R, Ascione L, Accadia M, Tuccillo B, Froehlig G, Sperzel J, Vogt J, Anselme F, Ducloux P, Ziglio F, Krumel F, Derval N, Steendijk P, Bordachar P, Deplagne A, Ritter P, Clementy J, Haissaguerre M, Jais P, Ismer B, Koerber T, Heinke M, Voss W, Trautwein U, Nienaber CA, Chang PC, Lin FC, Wang CC, Sargento L, Carpinteiro L, Marques P, Veiga A, Cortez-Dias N, Sousa J, Castellant P, Orhan E, Fatemi M, Etienne Y, Valls-Bertault V, Blanc JJ, Buck S, Maass AH, Schoonderwoerd BA, Van Veldhuisen DJ, Van Gelder IC, Vatasescu RG, Berruezo A, Mont L, Tamborero D, Tolosana JM, Brugada J, Tolosana JM, Mont L, Sitges M, Berruezo A, Delgado V, Tamborero D, Morales M, Brugada J, Teixeira R, Antonio N, Coelho L, Lourenco C, Ventura M, Cristovao J, Elvas L, Providencia LA, Matsushita K, Ishikawa T, Sumita S, Yamakawa Y, Matsumoto K, Hosoda J, Miki Y, Umemura S. Poster Session 4: CRT I. Europace 2009. [DOI: 10.1093/europace/euq240] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
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Castellant P, Fatemi M, Orhan E, Etienne Y, Blanc JJ. Patients with non-ischaemic dilated cardiomyopathy and hyper-responders to cardiac resynchronization therapy: characteristics and long-term evolution. Europace 2009; 11:350-5. [DOI: 10.1093/europace/eup035] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Koc A, Akbulut M, Orhan E, Celik Z, Bilgener S, Ercisli S. Identification of Turkish and standard apple rootstocks by morphological and molecular markers. Genet Mol Res 2009; 8:420-5. [DOI: 10.4238/vol8-2gmr600] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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Longo V, Orhan E, Cavalcante L, Porto S, Espinosa J, Varela J, Longo E. Understanding the origin of photoluminescence in disordered Ca0.60Sr0.40WO4: An experimental and first-principles study. Chem Phys 2007. [DOI: 10.1016/j.chemphys.2007.02.025] [Citation(s) in RCA: 55] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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Anicete-Santos M, Lima RC, Orhan E, Maurera MAMA, Simões LGP, Souza G, PIZANI PS, Leite ER, Varela JA, Longo E. Visible PL Phenomenon at Room Temperature in Disordered Structure of SrWO4 Powder. ACTA ACUST UNITED AC 2006. [DOI: 10.1007/s10820-006-9002-4] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Orhan E, Albarici V, Escote M, Machado M, Pizani P, Leite E, Sambrano J, Varela J, Longo E. A DFT rationalization of the room temperature photoluminescence of Li2TiSiO5. Chem Phys Lett 2004. [DOI: 10.1016/j.cplett.2004.09.091] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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Fang CM, Orhan E, de Wijs GA, Hintzen HT, de Groot RA, Marchand R, Saillard JY, de With G. The electronic structure of tantalum (oxy)nitrides TaON and Ta3N5. ACTA ACUST UNITED AC 2001. [DOI: 10.1039/b005751g] [Citation(s) in RCA: 163] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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